Changes between Version 7 and Version 8 of WikiStart

Timestamp:

Apr 4, 2013, 1:25:33 PM (10 years ago)

Author:

r.straver@…

Comment:

--

WikiStart

@@ -37 +37 @@
 matplotlib
 }}}
+
+As for the reference genome, any reference that contains every autosomal chromosome once should do. Such a reference can be built by downloading every chromosome from UCSC and concatenating them into a single fasta file:[[BR]]
+[http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/chromosomes/]
+
+Also, to map your reads and produce a .bam file, we suggest using BWA:[[BR]]
+[http://bio-bwa.sourceforge.net/]
+
+To read the produced .bam file we use SAMtools, which can be obtained here:
+[http://samtools.sourceforge.net/]
 
 == First Steps ==