Changes between Version 12 and Version 13 of WikiStart


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Timestamp:
Apr 4, 2013, 3:38:42 PM (10 years ago)
Author:
r.straver@…
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  • WikiStart

    v12 v13  
    5858As several steps require information about the GC contents of areas on the genome we need to prepare the necessary information for WISECONDOR. This step only needs to be repeated when the reference genome is replaced.
    5959{{{
    60 python countgc.py hg19.fasta gccountperbin.pickle
     60python countgc.py /path/to/hg19.fasta gccountperbin.pickle
    6161}}}
    6262This takes quite a few minutes as the implementation was not focused on speed, rather on quick functionality. As you rarely have to do this step this shouldn't really be a problem.