Changes between Version 10 and Version 11 of WikiStart


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Timestamp:
Apr 4, 2013, 3:00:47 PM (10 years ago)
Author:
r.straver@…
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  • WikiStart

    v10 v11  
    5656
    5757=== Count GC Frequency per Bin ===
    58 TODO - This little step fell off in a transition to BWA. Hang on.
     58As several steps require information about the GC contents of areas on the genome we need to prepare the necessary information for WISECONDOR. This step only needs to be repeated when the reference genome is replaced.
     59{{{
     60python countgc.py hg19.fasta gccountperbin.pickle
     61}}}
    5962
    6063=== Convert BAM to PICKLE ===