January 31th

Create pview Galaxy integration

• Config pview file
  • Experimental design
  • Files
  • Store design and files in folder structure

1. Connect mzXml files
   • Ask experiment designer: associate mzXml to design
2. Create folder structure
3. Run pview
4. Get the output files you're interested in

Command-line parameters

• -d, --directory

Directory structure

Directory structure - 1 level example

• Fasta or pepXML
• pview.xml

• condition C1
• condition C2

Directory structure - 3 levels example

• Condition 1
  • Replicate A
    • Fraction 1
    • Fraction 2
  • Replicate B
    • Fraction 1
    • Fraction 2

• Condition 2
  • Replicate A
    • Fraction 1
    • Fraction 2
  • Replicate B
    • Fraction 1
    • Fraction 2