wiki:JanuaryThirtyFirst

January 31th

Create pview Galaxy integration

  • Config pview file
    • Experimental design
    • Files
    • Store design and files in folder structure
  1. Connect mzXml files
    • Ask experiment designer: associate mzXml to design
  2. Create folder structure
  3. Run pview
  4. Get the output files you're interested in

Command-line parameters

  • -d, --directory

Directory structure

Directory structure - 1 level example

  • Fasta or pepXML
  • pview.xml
  • condition C1
  • condition C2

Directory structure - 3 levels example

  • Condition 1
    • Replicate A
      • Fraction 1
      • Fraction 2
    • Replicate B
      • Fraction 1
      • Fraction 2
  • Condition 2
    • Replicate A
      • Fraction 1
      • Fraction 2
    • Replicate B
      • Fraction 1
      • Fraction 2
Last modified 9 years ago Last modified on Jan 31, 2012, 11:21:18 AM