1 | <?xml version="1.0" encoding="UTF-8"?> |
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2 | <xs:schema attributeFormDefault="unqualified" elementFormDefault="qualified" xmlns:xs="http://www.w3.org/2001/XMLSchema" targetNamespace="http://schemas.nbic.nl/proteomics/experiment" xmlns:tns="http://schemas.nbic.nl/proteomics/experiment"> |
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3 | <xs:element name="Experiment"> |
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4 | <xs:complexType> |
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5 | <xs:sequence> |
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6 | <xs:element name="Tags" maxOccurs="1" minOccurs="0"> |
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7 | <xs:annotation> |
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8 | <xs:documentation>the tags. A tag can be for example a condition or just some other grouping. You can use this |
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9 | to later compare groups against each other instead of just comparing samples against each other</xs:documentation> |
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10 | </xs:annotation> |
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11 | <xs:complexType> |
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12 | <xs:sequence> |
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13 | <xs:element name="Tag" maxOccurs="unbounded" minOccurs="1"> |
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14 | <xs:complexType> |
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15 | <xs:sequence> |
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16 | <xs:element name="SampleRef" maxOccurs="unbounded" minOccurs="1"> |
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17 | <xs:complexType> |
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18 | <xs:simpleContent> |
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19 | <xs:extension base="xs:string"> |
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20 | <xs:attribute type="xs:string" name="ref" use="required"/> |
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21 | <xs:attribute type="xs:string" name="mslabelRef" use="optional"/> |
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22 | </xs:extension> |
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23 | </xs:simpleContent> |
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24 | </xs:complexType> |
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25 | </xs:element> |
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26 | </xs:sequence> |
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27 | <xs:attribute type="xs:string" name="name" use="required"/> |
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28 | </xs:complexType> |
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29 | </xs:element> |
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30 | </xs:sequence> |
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31 | </xs:complexType> |
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32 | </xs:element> |
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33 | <xs:element name="Comparisons" maxOccurs="1" minOccurs="0"> |
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34 | <xs:annotation> |
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35 | <xs:documentation>This would be the 'default' comparison you're interested in, if you add more tags they can be selected in the tool configuration field |
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36 | Can be an optional tag</xs:documentation> |
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37 | </xs:annotation> |
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38 | <xs:complexType> |
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39 | <xs:sequence> |
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40 | <xs:element name="Comparison" maxOccurs="unbounded" minOccurs="1"> |
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41 | <xs:complexType> |
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42 | <xs:simpleContent> |
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43 | <xs:extension base="xs:string"> |
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44 | <xs:attribute type="xs:string" name="fromTag" use="required"/> |
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45 | <xs:attribute type="xs:string" name="toTag" use="required"/> |
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46 | </xs:extension> |
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47 | </xs:simpleContent> |
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48 | </xs:complexType> |
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49 | </xs:element> |
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50 | </xs:sequence> |
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51 | </xs:complexType> |
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52 | </xs:element> |
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53 | <xs:element name="MSLabels" maxOccurs="1" minOccurs="0"> |
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54 | <xs:annotation> |
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55 | <xs:documentation>Information needed to understand (metabolic)labeling strategies</xs:documentation> |
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56 | </xs:annotation> |
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57 | <xs:complexType> |
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58 | <xs:sequence> |
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59 | <xs:element name="MSLabel" maxOccurs="unbounded" minOccurs="1"> |
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60 | <xs:complexType> |
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61 | <xs:simpleContent> |
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62 | <xs:extension base="xs:string"> |
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63 | <xs:attribute type="xs:string" name="id" use="required"/> |
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64 | </xs:extension> |
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65 | </xs:simpleContent> |
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66 | </xs:complexType> |
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67 | </xs:element> |
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68 | </xs:sequence> |
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69 | </xs:complexType> |
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70 | </xs:element> |
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71 | <xs:element name="SampleReplicates" maxOccurs="1" minOccurs="0"> |
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72 | <xs:complexType> |
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73 | <xs:sequence> |
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74 | <xs:element name="Replicate"> |
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75 | <xs:complexType> |
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76 | <xs:sequence> |
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77 | <xs:element name="SampleRef" maxOccurs="unbounded" minOccurs="1"> |
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78 | <xs:complexType> |
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79 | <xs:simpleContent> |
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80 | <xs:extension base="xs:string"> |
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81 | <xs:attribute type="xs:string" name="ref" use="required"/> |
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82 | </xs:extension> |
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83 | </xs:simpleContent> |
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84 | </xs:complexType> |
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85 | </xs:element> |
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86 | </xs:sequence> |
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87 | <xs:attribute type="xs:string" name="name" use="required"/> |
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88 | </xs:complexType> |
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89 | </xs:element> |
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90 | </xs:sequence> |
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91 | </xs:complexType> |
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92 | </xs:element> |
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93 | <xs:element name="Samples"> |
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94 | <xs:complexType> |
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95 | <xs:sequence> |
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96 | <xs:element name="Sample" maxOccurs="unbounded" minOccurs="1"> |
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97 | <xs:complexType> |
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98 | <xs:sequence> |
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99 | <xs:element name="Measurements"> |
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100 | <xs:annotation> |
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101 | <xs:documentation>etc... etc...</xs:documentation> |
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102 | </xs:annotation> |
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103 | <xs:complexType> |
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104 | <xs:sequence> |
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105 | <xs:element name="Measurement" maxOccurs="unbounded" minOccurs="1"> |
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106 | <xs:annotation> |
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107 | <xs:documentation>All 40+14 measurements for S1, e.g.: All 40+14 measurements for S2, e.g.:</xs:documentation> |
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108 | </xs:annotation> |
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109 | <xs:complexType> |
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110 | <xs:sequence> |
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111 | <xs:element name="File" maxOccurs="unbounded" minOccurs="1"> |
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112 | <xs:complexType> |
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113 | <xs:simpleContent> |
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114 | <xs:extension base="xs:string"> |
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115 | <xs:attribute type="xs:string" name="filePath" use="required"/> |
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116 | <xs:attribute type="xs:string" name="id" use="required"/> |
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117 | <xs:attribute type="xs:byte" name="order" use="optional"/> |
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118 | </xs:extension> |
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119 | </xs:simpleContent> |
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120 | </xs:complexType> |
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121 | </xs:element> |
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122 | </xs:sequence> |
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123 | <xs:attribute type="xs:string" name="id" use="required"/> |
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124 | </xs:complexType> |
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125 | </xs:element> |
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126 | </xs:sequence> |
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127 | </xs:complexType> |
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128 | </xs:element> |
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129 | </xs:sequence> |
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130 | <xs:attribute type="xs:string" name="id" use="required"/> |
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131 | </xs:complexType> |
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132 | </xs:element> |
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133 | </xs:sequence> |
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134 | </xs:complexType> |
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135 | </xs:element> |
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136 | <xs:element name="MeasurementReplicates" maxOccurs="1" minOccurs="0"> |
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137 | <xs:complexType> |
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138 | <xs:sequence> |
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139 | <xs:element name="Replicate" maxOccurs="unbounded" minOccurs="1"> |
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140 | <xs:annotation> |
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141 | <xs:documentation>... ... ... ...</xs:documentation> |
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142 | </xs:annotation> |
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143 | <xs:complexType> |
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144 | <xs:sequence> |
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145 | <xs:element name="MeasurementRef"> |
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146 | <xs:annotation> |
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147 | <xs:documentation>The 40 LC-MS/MS (CID) measurements here The 14 LC-MS/MS (ETD) measurements here The 40 LC-MS/MS (CID) measurements here The 14 LC-MS/MS (ETD) measurements here</xs:documentation> |
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148 | </xs:annotation> |
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149 | <xs:complexType> |
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150 | <xs:simpleContent> |
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151 | <xs:extension base="xs:string"> |
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152 | <xs:attribute type="xs:string" name="ref" use="required"/> |
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153 | </xs:extension> |
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154 | </xs:simpleContent> |
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155 | </xs:complexType> |
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156 | </xs:element> |
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157 | </xs:sequence> |
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158 | <xs:attribute type="xs:string" name="name" use="required"/> |
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159 | </xs:complexType> |
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160 | </xs:element> |
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161 | </xs:sequence> |
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162 | </xs:complexType> |
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163 | </xs:element> |
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164 | </xs:sequence> |
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165 | |
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166 | </xs:complexType> |
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167 | </xs:element> |
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168 | </xs:schema> |
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