source: trunk/id-mapper/mapper.ini @ 6

Last change on this file since 6 was 6, checked in by rob.hooft@…, 6 years ago

first cut at the pmid2doi upfdater

File size: 1.3 KB
Line 
1# Configuration settings for the continuous mapping script for Pubmed ID's to DOI's.
2
3[mysql]
4# Where to connect to our database server
5host=localhost
6port=3306
7username=pmid2doi
8password=2HqmE29WG9Zi87M2Yx4cBs
9
10# The name of the database that is used by this program
11db_mapping=pmid2doi_continuous
12
13# In that database, we keep information about unmapped pmids, and a table with mappings
14table_unmapped=todo
15table_mapped=complete_mappings
16
17# For the creation of the list of unmapped pmid's, we need a database of medline
18# somewhere too, but only for "create table"
19db_medline=medline2013
20
21[crossref]
22# Information about the location of the crossref web service used for the mapping
23PID=<set your crossref API key here>
24api_url=http://www.crossref.org/openurl/?
25doi_re=<doi type="journal_article">(.+?)</doi>
26
27[run]
28# Details on the run
29
30# Do we need to create the input table (only if it does not exist)
31create_table=0
32
33# Do we need to update the table with new entries from medline?
34update_table=0
35
36# Enable debug mode?
37debug=0
38
39# How many parallel threads to run, in debug as well as normal mode.
40nr_thread_debug=1
41nr_thread=10
42
43# How many times a crossref question can be retried if it mysteriously fails
44nretry=3
45
46# How often should each thread report on its progress?
47reportinterval=100
48
49
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