Version 2 (modified by r.w.w.brouwer@…, 7 years ago) (diff)


User guide


NARWHAL will obtain sample information from a tab-delimited sample-sheet. The sample-sheet is a tab-delimited format with a fixed column order. Withing the columns, values can be delimited up to 2 levels deep using commas and semicoloms repectively. The format of the sample-sheet is as follows:

Quick start

After creating the sample-sheet, NARWHAL can be run using a single command:

# simple run
> ./ -s path_to_sample_sheet path_to_BASECALLS path_to_OUTPUT

The script runs the and the scripts in sequence.

Detailed run


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