wiki:userguide

Version 2 (modified by r.w.w.brouwer@…, 7 years ago) (diff)

--

User guide

Samplesheet

NARWHAL will obtain sample information from a tab-delimited sample-sheet. The sample-sheet is a tab-delimited format with a fixed column order. Withing the columns, values can be delimited up to 2 levels deep using commas and semicoloms repectively. The format of the sample-sheet is as follows:

Quick start

After creating the sample-sheet, NARWHAL can be run using a single command:

# simple run
> ./narwhal.sh -s path_to_sample_sheet path_to_BASECALLS path_to_OUTPUT

The narwhal.sh script runs the prepare_run.py and the run_tools.sh scripts in sequence.

Detailed run

Output

Attachments (8)

Download all attachments as: .zip