Changes between Version 1 and Version 2 of userguide


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Timestamp:
Oct 6, 2011, 4:11:32 PM (5 years ago)
Author:
r.w.w.brouwer@…
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  • userguide

    v1 v2  
    11= User guide =
    22
     3== Samplesheet ==
     4
     5NARWHAL will obtain sample information from a tab-delimited sample-sheet. The sample-sheet is a tab-delimited format with a fixed column order. Withing the columns, values can be delimited up to 2 levels deep using commas and semicoloms repectively. The format of the sample-sheet is as follows:
     6
     7
     8== Quick start ==
     9
     10After creating the sample-sheet, NARWHAL can be run using a single command:
     11
     12{{{
     13# simple run
     14> ./narwhal.sh -s path_to_sample_sheet path_to_BASECALLS path_to_OUTPUT
     15}}}
     16
     17The narwhal.sh script runs the prepare_run.py and the run_tools.sh scripts in sequence.
     18
     19
     20== Detailed run ==
     21
     22
     23== Output ==