Changes between Version 10 and Version 11 of userguide


Ignore:
Timestamp:
Oct 6, 2011, 4:39:16 PM (5 years ago)
Author:
r.w.w.brouwer@…
Comment:

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  • userguide

    v10 v11  
    8989||Edit-rate||0.0033234||
    9090
     91[[BR]]
    9192
    92 [[Image(alignment.PNG)]]
     93[[Image(edit_distance.PNG)]][[BR]]
     94Fig. 1) Edit distance [[BR]]
     95Count of reads that align at the reference genome versus the number of mismatches (edit distance) in this alignment.[[BR]]
     96
     97[[Image(alignment.PNG)]][[BR]]
     98Fig. 2) Alignment distribution[[BR]]
     99Count of reads that aligns at each of the chromosomes present in the reference genome.[[BR]]
     100
     101[[Image(length.PNG)]][[BR]]
     102Fig. 3) Read length[[BR]]
     103Count of reads versus the length of the read.[[BR]]
     104
     105[[Image(replication.PNG)]][[BR]]
     106Fig. 4) Replication rate[[BR]]
     107Count of reads versus replication number. A replication number of n means that the read sequence has been sequenced n + 1 times (so is replicated n times).[[BR]]