Changes between Version 1 and Version 2 of Installation


Ignore:
Timestamp:
Oct 6, 2011, 3:59:31 PM (5 years ago)
Author:
r.w.w.brouwer@…
Comment:

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  • Installation

    v1 v2  
    55=== Interpreters ===
    66
    7 Python (> 2,6)
    8 BASH
    9 R
     7Python (> 2,6) [[BR]]
     8BASH [[BR]]
     9R [[BR]]
    1010
    1111=== GNU/Linux software ===
    1212
    13 gzip
    14 pdflatex
    15 GCC (optional)
    16 libz (optional)
     13gzip [[BR]]
     14pdflatex [[BR]]
     15GCC (optional) [[BR]]
     16libz (optional) [[BR]]
    1717
    1818=== Bioinformatics tools ===
     
    2020NARWHAL relies on a number of previously published Bioinformatics tools. These are all open-source and freely available. We have not tested Narwhal with all version of these tools, but we expect no problems with newer versions of these tools. However, to ensure proper operation of Narwhal explicitely compatible versions of these tools are listed below. Through the version control mechanisms present in the hosting websites, these versions should be still available available.
    2121
    22 Tool    Version Link    Pubmed
    23 Bowtie  0.12.5  link    19261174
    24 BWA     0.5.9   link    19451168
    25 SAMtools        0.1.18  link    19505943
    26 BAMtools (optional)     0.9     link    21493652
    27 Instructions
     22Tool    Version
     23Bowtie  0.12.5  [http://bowtie-bio.sourceforge.net/]
     24BWA     0.5.9   
     25SAMtools        0.1.18
     26BAMtools (optional)     0.9
     27
     28== Instructions ==
    2829
    2930NARWHAL can be easily installed on most UNIX(r) based operating systems. First download the tar-bundled NARWHAL installation from this link and unpack this in your directory of choice: