source: trunk

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Age Author Log Message
(edit) @49   8 years r.w.w.brouwer Added export script
(edit) @48   9 years r.w.w.brouwer Added a script based on the FastQ python library for trimming LinDA …
(edit) @47   9 years r.w.w.brouwer Essential bug fix for the demultiplexer
(edit) @46   9 years r.w.w.brouwer Essential bug fix for the demultiplexer
(edit) @45   9 years r.w.w.brouwer Essential bug fix for the demultiplexer
(edit) @44   9 years r.w.w.brouwer Essential bug fix for the demultiplexer
(edit) @43   9 years m.vandenhout recompiled bamstats tool.
(edit) @42   9 years m.vandenhout Fixed bug in regular expression for tophat in fasta mode
(edit) @41   9 years jan.vanhaarst Updated binary version of tools from src/cpp directory
(edit) @40   9 years jan.vanhaarst sum the PHRED scores per read
(edit) @39   9 years jan.vanhaarst Removed some compiler warnings by casting some unsigned results to int
(edit) @38   9 years jan.vanhaarst Remove phredreport binary, moved to tools
(edit) @37   9 years jan.vanhaarst Made counter variable unsigned, to remove warning of compiler
(edit) @36   9 years jan.vanhaarst Fixed the name of the sourcefile to use.
(edit) @35   9 years r.w.w.brouwer Fixed the BWA Paired End mode
(edit) @34   9 years r.w.w.brouwer Fixed demultiplex_stats, to cope with spaces in sampleIDs some …
(edit) @33   9 years jan.vanhaarst Removed duplicate tools directory
(edit) @32   9 years r.w.w.brouwer fixed bug in alignment stats overview generation
(edit) @31   9 years jan.vanhaarst Added README file, to mostly point people back to the NBIC trac site.
(edit) @30   9 years m.vandenhout added awk scripts for alignment statistics overview
(edit) @29   9 years m.vandenhout Fixed tophat alignment for two or more input fastq files per sample …
(edit) @28   9 years r.w.w.brouwer Recompiled and updated qseq2fastq tool
(edit) @27   9 years r.w.w.brouwer Recompiled and updated qseq2fastq tool
(edit) @26   9 years r.w.w.brouwer Added a small C-tool (phredreport) that determines the sum, minimum …
(edit) @25   9 years r.w.w.brouwer Added a cleaner script that identifies all files of specific types
(edit) @24   9 years r.w.w.brouwer added narwhal.sh prepare output to run.log
(edit) @23   9 years r.w.w.brouwer Auto remove quotes from the samplesheet added
(edit) @22   9 years r.w.w.brouwer Auto remove quotes from the samplesheet added
(edit) @21   9 years r.w.w.brouwer Added explicit unicode conversions to the align.py script
(edit) @20   9 years r.w.w.brouwer added quotes to align.py
(edit) @19   9 years r.w.w.brouwer solved minot bug
(edit) @18   9 years r.w.w.brouwer Added a debug mode to align.py script
(edit) @17   9 years r.w.w.brouwer Quotes added in the align.py profiles check: to facilitate debugging
(edit) @16   10 years m.vandenhout Tophat Aligner added
(edit) @15   10 years r.w.w.brouwer Fixed memmory bug in qseq2fastq
(edit) @14   10 years r.w.w.brouwer Made narwhal.sh executable
(edit) @13   10 years r.w.w.brouwer Squished a bug
(edit) @12   10 years r.w.w.brouwer Modified legend in the quality_info.sh script
(edit) @11   10 years r.w.w.brouwer Bug solved in trim and added Fastq feature
(edit) @10   10 years r.w.w.brouwer Deconvuluted runtools.sh install directory function
(edit) @9   10 years r.w.w.brouwer Added narwhal.sh controle script
(edit) @8   10 years r.w.w.brouwer solved bug in run_tools.sh
(edit) @7   10 years r.w.w.brouwer added the profiles.json file
(edit) @6   10 years r.w.w.brouwer solved run_tools.sh bug
(edit) @5   10 years r.w.w.brouwer directory restructering
(edit) @4   10 years r.w.w.brouwer Fourth initial commit
(edit) @3   10 years r.w.w.brouwer Third partial commit
(edit) @2   10 years r.w.w.brouwer Second partial import
(add) @1   10 years r.w.w.brouwer initial partial import
Note: See TracRevisionLog for help on using the revision log.