Changeset 38

Timestamp:

Aug 11, 2010, 4:08:18 PM (10 years ago)

Author:

j@…

bzr:base-revision:

j@dannynavarro.net-20100809115605-tb1fgzs9o20f5730

bzr:committer:

Danny Navarro <j@dannynavarro.net>

bzr:file-ids:

mzcms/parsers.py parsers.py-20100806092910-g1sxvv1o5b9umkof-1

bzr:mapping-version:

v4

bzr:repository-uuid:

724254b2-fbe6-419d-9466-c04ef4c9d29d

bzr:revision-id:

j@dannynavarro.net-20100809120631-tojiityird7y8f68

bzr:revno:

38

bzr:revprop:branch-nick:

trunk

bzr:root:

trunk

bzr:timestamp:

2010-08-09 14:06:31.609999895 +0200

bzr:user-agent:

bzr2.1.2+bzr-svn1.0.3

svn:original-date:

2010-08-09T12:06:31.610000Z

Message:

Implemented prot id accession string extractor

File:

• trunk/mzcms/parsers.py (modified) (1 diff)

trunk/mzcms/parsers.py

@@ -166 +166 @@
                 yield psm
 
+def get_prot_ids(accs):
+    return (x[1].split('"')
+            for x in (x.split(':')
+            for x in accs.split(',"')
+                      )
+            )
+
 def apply_mods(peptide_str, mod_str):
     """Takes a peptide string and applies mascot modification string. It