Changeset 37

Timestamp:

Aug 11, 2010, 4:08:02 PM (11 years ago)

Author:

j@…

bzr:base-revision:

j@dannynavarro.net-20100809114648-ieq7nmfd0ljlvleh

bzr:committer:

Danny Navarro <j@dannynavarro.net>

bzr:file-ids:

mzcms/parsers.py parsers.py-20100806092910-g1sxvv1o5b9umkof-1

bzr:mapping-version:

v4

bzr:repository-uuid:

724254b2-fbe6-419d-9466-c04ef4c9d29d

bzr:revision-id:

j@dannynavarro.net-20100809115605-tb1fgzs9o20f5730

bzr:revno:

37

bzr:revprop:branch-nick:

trunk

bzr:root:

trunk

bzr:timestamp:

2010-08-09 13:56:05.730999947 +0200

bzr:user-agent:

bzr2.1.2+bzr-svn1.0.3

svn:original-date:

2010-08-09T11:56:05.731000Z

Message:

MascotPsn? named tuple implemented

File:

• trunk/mzcms/parsers.py (modified) (2 diffs)

trunk/mzcms/parsers.py

@@ -33 +33 @@
 #fraction_regex = re.compile(r'fraction%3a%20(\d+)')
 
+MascotPsm = namedtuple('MascotPsm',
+                       'rank '
+                       'pep_mass '
+                       'delta_mass '
+                       'pep_seq '
+                       'score '
+                       'prot_ids'
+                       )
+
 class DatParser(object):
     """Mascot Dat Parser
@@ -94 +103 @@
                 is_target = check_target(accs, self.decoy_regex)
                 if is_target and rank == 1 or rank == 2:
-                    mascot_psm = MascotPsm('mascot_psm',
+                    mascot_psm = MascotPsm(
                             rank=rank,
                             pep_mass=pep_mass,
                             pep_seq=pep_seq,
+                            score=score,
                             prot_ids=prot_ids
                             )