Changeset 37
- Timestamp:
- Aug 11, 2010, 4:08:02 PM (11 years ago)
- bzr:base-revision:
- j@dannynavarro.net-20100809114648-ieq7nmfd0ljlvleh
- bzr:committer:
- Danny Navarro <j@dannynavarro.net>
- bzr:file-ids:
mzcms/parsers.py parsers.py-20100806092910-g1sxvv1o5b9umkof-1- bzr:mapping-version:
- v4
- bzr:repository-uuid:
- 724254b2-fbe6-419d-9466-c04ef4c9d29d
- bzr:revision-id:
- j@dannynavarro.net-20100809115605-tb1fgzs9o20f5730
- bzr:revno:
- 37
- bzr:revprop:branch-nick:
- trunk
- bzr:root:
- trunk
- bzr:timestamp:
- 2010-08-09 13:56:05.730999947 +0200
- bzr:user-agent:
- bzr2.1.2+bzr-svn1.0.3
- svn:original-date:
- 2010-08-09T11:56:05.731000Z
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
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-
trunk/mzcms/parsers.py
r36 r37 33 33 #fraction_regex = re.compile(r'fraction%3a%20(\d+)') 34 34 35 MascotPsm = namedtuple('MascotPsm', 36 'rank ' 37 'pep_mass ' 38 'delta_mass ' 39 'pep_seq ' 40 'score ' 41 'prot_ids' 42 ) 43 35 44 class DatParser(object): 36 45 """Mascot Dat Parser … … 94 103 is_target = check_target(accs, self.decoy_regex) 95 104 if is_target and rank == 1 or rank == 2: 96 mascot_psm = MascotPsm( 'mascot_psm',105 mascot_psm = MascotPsm( 97 106 rank=rank, 98 107 pep_mass=pep_mass, 99 108 pep_seq=pep_seq, 109 score=score, 100 110 prot_ids=prot_ids 101 111 )
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