Changeset 31

Timestamp:

Aug 11, 2010, 4:06:20 PM (10 years ago)

Author:

j@…

bzr:base-revision:

j@dannynavarro.net-20100806140012-pvqfaqhcmlz08i2f

bzr:committer:

Danny Navarro <j@dannynavarro.net>

bzr:file-ids:

TODO.txt todo.txt-20100730132122-uzfgrm72wgp87uwo-1
mzcms/parsers.py parsers.py-20100806092910-g1sxvv1o5b9umkof-1

bzr:mapping-version:

v4

bzr:repository-uuid:

724254b2-fbe6-419d-9466-c04ef4c9d29d

bzr:revision-id:

j@dannynavarro.net-20100806143514-g5x58fq11jr1xnl9

bzr:revno:

31

bzr:revprop:branch-nick:

trunk

bzr:root:

trunk

bzr:timestamp:

2010-08-06 16:35:14.986999989 +0200

bzr:user-agent:

bzr2.1.2+bzr-svn1.0.3

svn:original-date:

2010-08-06T14:35:14.987000Z

Message:

updated TODO

Location:

trunk

Files:

• TODO.txt (modified) (1 diff)
• mzcms/parsers.py (modified) (1 diff)

trunk/TODO.txt

@@ -3 +3 @@
 
 #. Get models defined
-#. Add parser to populate models
+#. Parser to populate models
+ #. Get accessions numbers of proteins right, deal with proteins
+ #. Modifications: Parse Unimod, Deltamass
 #. Test models
 #. Protein view
-
 
 XXX: Restrict specialized containers.

trunk/mzcms/parsers.py

@@ -79 +79 @@
                 break
         for line in dat_file:
-            import ipdb; ipdb.set_trace()
             match = re.match(PEP_REGEX, line)
             if match:
+                import ipdb; ipdb.set_trace()
                 nativeid = int(match.group(1))
                 peptide_str = match.group(2)