Changeset 18
- Timestamp:
- Aug 11, 2010, 4:02:29 PM (11 years ago)
- bzr:base-revision:
- j@dannynavarro.net-20100805131703-ft3f535ezlmukpum
- bzr:committer:
- Danny Navarro <j@dannynavarro.net>
- bzr:file-ids:
mzcms/models.py models.py-20100730084238-fjjwldiefr0w07zv-4- bzr:mapping-version:
- v4
- bzr:repository-uuid:
- 724254b2-fbe6-419d-9466-c04ef4c9d29d
- bzr:revision-id:
- j@dannynavarro.net-20100805133009-k3n8lq42t030hm3c
- bzr:revno:
- 18
- bzr:revprop:branch-nick:
- trunk
- bzr:root:
- trunk
- bzr:timestamp:
- 2010-08-05 15:30:09.867000103 +0200
- bzr:user-agent:
- bzr2.1.2+bzr-svn1.0.3
- svn:original-date:
- 2010-08-05T13:30:09.867000Z
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
trunk/mzcms/models.py
r17 r18 14 14 self.sequence = str(native_id) 15 15 self.sequence = str(sequence) 16 #self.pep_refs = tuple(pep_refs)16 self.pep_refs = tuple(pep_refs) 17 17 18 18 class Peptides(Folder): … … 27 27 self.length = len(sequence) 28 28 29 class Psms(Folder):30 pass31 32 class Psm(Persistent):33 pass34 35 29 class Spectra(Folder): 36 30 pass … … 39 33 pass 40 34 41 class ClassName(object): 42 """docstring for ClassName""" 43 def __init__(self, arg): 44 super(ClassName, self).__init__() 45 self.arg = arg 35 class Psms(Folder): 36 """A container for Psms""" 37 pass 38 39 class Psm(Persistent): 40 """A Peptide to Spectrum Match""" 41 def __init__(self, score, rank, delta_mass, delta_score, 42 sequence_rank2, pep_ref, spec_ref): 43 self.score = float(score) 44 self.rank = int(rank) 45 self.delta_mass = float(delta_mass) 46 self.delta_score = float(delta_score) 47 self.sequence_rank2 = str(sequence_rank2) 48 self.pep_ref = str(pep_ref) 49 self.spec_ref = str(spec_ref) 46 50 47 51 def appmaker(zodb_root):
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