Changeset 18

Timestamp:

Aug 11, 2010, 4:02:29 PM (11 years ago)

Author:

j@…

bzr:base-revision:

j@dannynavarro.net-20100805131703-ft3f535ezlmukpum

bzr:committer:

Danny Navarro <j@dannynavarro.net>

bzr:file-ids:

mzcms/models.py models.py-20100730084238-fjjwldiefr0w07zv-4

bzr:mapping-version:

v4

bzr:repository-uuid:

724254b2-fbe6-419d-9466-c04ef4c9d29d

bzr:revision-id:

j@dannynavarro.net-20100805133009-k3n8lq42t030hm3c

bzr:revno:

18

bzr:revprop:branch-nick:

trunk

bzr:root:

trunk

bzr:timestamp:

2010-08-05 15:30:09.867000103 +0200

bzr:user-agent:

bzr2.1.2+bzr-svn1.0.3

svn:original-date:

2010-08-05T13:30:09.867000Z

Message:

Attributes for PSM model

File:

• trunk/mzcms/models.py (modified) (3 diffs)

trunk/mzcms/models.py

@@ -14 +14 @@
         self.sequence = str(native_id)
         self.sequence = str(sequence)
-        #self.pep_refs = tuple(pep_refs)
+        self.pep_refs = tuple(pep_refs)
 
 class Peptides(Folder):
@@ -27 +27 @@
         self.length = len(sequence)
 
-class Psms(Folder):
-    pass
-
-class Psm(Persistent):
-    pass
-
 class Spectra(Folder):
     pass
@@ -39 +33 @@
     pass
 
-class ClassName(object):
-    """docstring for ClassName"""
-    def __init__(self, arg):
-        super(ClassName, self).__init__()
-        self.arg = arg
+class Psms(Folder):
+    """A container for Psms"""
+    pass
+
+class Psm(Persistent):
+    """A Peptide to Spectrum Match"""
+    def __init__(self, score, rank, delta_mass, delta_score,
+                 sequence_rank2, pep_ref, spec_ref):
+        self.score = float(score)
+        self.rank = int(rank)
+        self.delta_mass = float(delta_mass)
+        self.delta_score = float(delta_score)
+        self.sequence_rank2 = str(sequence_rank2)
+        self.pep_ref = str(pep_ref)
+        self.spec_ref = str(spec_ref)
 
 def appmaker(zodb_root):