Version 3 (modified by b.hoekman@…, 2 years ago)

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Module Settings

Module Properties

Author: bhoekman
Instrument: QTof_(centroid)
Data processing step: Feature Quantitation
Program: MZmine Feature Quantitation
Version: 0.6

Description

Settings for feature quantification with MZmine for centroided mzXML.

Settings

        <Program program="MZmine" method="MZmine_peakPicking" format="normal">
            <FileSetReferences>
                <FileRef initialFiles="true" program="" method=""/>
            </FileSetReferences>
            <Parameters>
                <Attribute attributeName="peakPickerAlgorithm" value="CentroidPeakPicker"/>
                <Attribute attributeName="binSize" value="0.05"/>
                <Attribute attributeName="chromatographicThresholdLevel" value="0"/>            
             	<Attribute attributeName="intTolerance" value="0.80"/>
             	<Attribute attributeName="minimumPeakDuration" value="12"/>
             	<Attribute attributeName="minimumPeakHeight" value="50"/>
                <Attribute attributeName="mzTolerance" value="0.1"/>
                <Attribute attributeName="noiseLevel" value="3"/>             	

                <Attribute attributeName="transformationFileLocation" value="${GALAXY_DATA_INDEX_DIR}/msCompare/settings/transformations/featureListTransformations.xml"/>
            </Parameters>
        </Program>