Version 7 (modified by b.hoekman@…, 2 years ago)

--

Module Settings

Module Properties

Author: bhoekman
Instrument: IonTrap
Data processing step: Feature Quantitation
Program: MZmine Feature Quantitation
Version: 0.6

Description

Settings for feature quantification with MZmine.

Settings

        <Program program="MZmine" method="MZmine_peakPicking" format="normal">
            <FileSetReferences>
                <FileRef initialFiles="true" program="" method=""/>
            </FileSetReferences>
            <Parameters>
                <Attribute attributeName="smoothing" value="ChromatographicMedianFilter"/>
                <Attribute attributeName="smoothing_mzTolerance" value="0.1"/>
                <Attribute attributeName="smoothing_oneSidedWindowLength" value="5"/>
                <Attribute attributeName="intTolerance" value="0.50"/>
                <Attribute attributeName="mzTolerance" value="1"/>
                <Attribute attributeName="maximumMZPeakWidth" value="5"/>
                <Attribute attributeName="noiseLevel" value="3"/>
                <Attribute attributeName="minimumPeakDuration" value="10"/>
                <Attribute attributeName="minimumPeakHeight" value="100"/>
                <Attribute attributeName="peakPickerAlgorithm" value="RecursiveThresholdPicker"/>
                <Attribute attributeName="binSize" value="0.1"/>
                <Attribute attributeName="chromatographicThresholdLevel" value="0"/>
                <Attribute attributeName="minimumMZPeakWidth" value="0.1"/>
                <Attribute attributeName="transformationFileLocation" value="${GALAXY_DATA_INDEX_DIR}/msCompare/settings/transformations/featureListTransformations.xml"/>
            </Parameters>
        </Program>