project and user administration
Manager of projects
||Code for the Concept Profile Mining Webservices.
||A frontend built to search, edit and create concepts for ConceptWiki
||Pindel: a pattern growth approach to detect break points of large deletions , medium sized insertions, inversions and other structural variations from paired-end short reads.
||A universal open access repository of editable concepts. This is part of Open PHACTS.
||A generic ConceptWiki API client for Java/Groovy applications
||Automatically recognizing concepts in human-readable text. This project uses Peregrine as text indexer. It searches for known terms in an input text and maps them to concepts in an ontology. If a term could refer to more than one concept then Peregrine tries to disambiguate it.
||Tools developed by various groups in the BioAssist platforms together with their tool configs for installation in a Galaxy server.
||Generic code and mailing lists for the NBIC BioAssist interoperability task force.
||A web based user interface ("Knowledge Enhancer") using semantic technology to create a popup in the browser linking terms in the text to concepts in the ConceptWiki and other third party services. Aimed at knowledge discovery.
||Generic code and mailing lists for the BioAssist Engineering Team
||General system administration scripts used by the BioAssist Engineering Team
||A web site application that stores knowledge and information using concept triples. Users can both view and edit the contents of the triple store using a wiki-like application.
Member of projects
||A hosting place for documents, discussions, bug reports on NBIC Galaxy Server
||Sandbox project for NBIC project developers. If you want to experiment with the tools at your disposal, please do it here.