Hailiang Mei

Manager of projects

DVD Diagnostic Variant Database (DVD) is used to share all genetic variants detected in the course of next-generation sequencing (NGS) applications between collaborators.
PASSion PASSion: a pattern growth based algorithm for splice site detection from paired-end RNA-Seq reads.
conceptwiki A universal open access repository of editable concepts. This is part of Open PHACTS.
conerice Configuration files and documentation for bioinformatics servers/services.
data-mining Automatically recognizing concepts in human-readable text. This project uses Peregrine as text indexer. It searches for known terms in an input text and maps them to concepts in an ontology. If a term could refer to more than one concept then Peregrine tries to disambiguate it.
galaxytools Tools developed by various groups in the BioAssist platforms together with their tool configs for installation in a Galaxy server.
linker A web based user interface ("Knowledge Enhancer") using semantic technology to create a popup in the browser linking terms in the text to concepts in the ConceptWiki and other third party services. Aimed at knowledge discovery.
metagenomics
nbiceng Generic code and mailing lists for the BioAssist Engineering Team
nbicgalaxy A hosting place for documents, discussions, bug reports on NBIC Galaxy Server
ngstools This project contains the source code developed within the NGS task force.
trait-ngs Project management repository for the NGS work package of the CTMM TraIT project. For internal use only.
wikidata A web site application that stores knowledge and information using concept triples. Users can both view and edit the contents of the triple store using a wiki-like application.

Member of projects

Pindel Pindel: a pattern growth approach to detect break points of large deletions , medium sized insertions, inversions and other structural variations from paired-end short reads.
biosemantics Support of researchers and developers working on semantic solutions for life science projects.
foundation Project for the setup of a foundation for the governance of open source software in a bioinformatics context; software that is not used by programmers; software for which the governance requires a community of users (life-scientists, biologists, clinicians, laboratory personnel, etc) as well as a community of programmers (bioinformaticians, informaticians, statisticians, etc)
interoperability Generic code and mailing lists for the NBIC BioAssist interoperability task force.
sysadmin General system administration scripts used by the BioAssist Engineering Team