Changes between Version 5 and Version 6 of WikiStart


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Timestamp:
Dec 11, 2012, 1:51:30 PM (7 years ago)
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t.pham@…
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  • WikiStart

    v5 v6  
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    44[[BR]]
     5This R package contains two functions. The beta-binomial test ('''bb.test''') can be used for significance analysis of independent samples (two or more groups). The inverted beta-binomial test ('''ibb.test''') can be used for paired sample testing (e.g. pre-treatment and post-treatment data).
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     7[[BR]]
     8
     9All rights reserved by the author. This software package is provided for research purposes in a non-commercial environment. Please do not redistribute.
    610----
    711
     
    2024=== Arguments ===
    2125
    22 x: A vector or matrix of counts. When x a matrix, the test is performed row by row.
     26''x'': A vector or matrix of counts. When ''x'' a matrix, the test is performed row by row.
    2327
    24 tx: A vector or matrix of the total sample counts. When tx is a matrix, the number of rows must be equal to the number of rows of x.
     28''tx'': A vector or matrix of the total sample counts. When ''tx'' is a matrix, the number of rows must be equal to the number of rows of ''x''.
    2529
    26 group: A vector of group indicators.
     30''group'': A vector of group indicators.
    2731
    28 alternative: A character string specifying the alternative hypothesis: "two.sided" (default), "greater" or "less".
     32''alternative'': A character string specifying the alternative hypothesis: "two.sided" (default), "greater" or "less".
    2933
    30 n.threads: The number of threads to be used.
     34''n.threads'': The number of threads to be used.
    3135
    3236=== Details ===
    3337
    34 When n.threads is 0, the maximal number of CPU cores is used. When n.threads is -1, one CPU core less than the maximum is used, and so on.
     38When ''n.threads'' is 0, the maximal number of CPU cores is used. When ''n.threads'' is -1, one CPU core less than the maximum is used, and so on.
    3539
    3640=== Value ===
    3741
    38 A list with a single component is returned
     42A list with a single component is returned:
    3943
    40 p.value: The p-value of the test.
     44''p.value'': The ''p''-value of the test.
    4145
    4246=== Author ===
     
    7377=== Arguments ===
    7478
    75 x: A vector or matrix of counts. When x is a matrix, the test is performed row by row.
     79''x'': A vector or matrix of counts. When ''x'' is a matrix, the test is performed row by row.
    7680
    77 tx: A vector or matrix of the total sample counts. When tx is a matrix, the number of rows must be equal to the number of rows of x.
     81''tx'': A vector or matrix of the total sample counts. When ''tx'' is a matrix, the number of rows must be equal to the number of rows of ''x''.
    7882
    79 group: A vector of group indicators. There should be two groups of equal size. The samples are matched by the order of appearance in each group.
     83''group'': A vector of group indicators. There should be two groups of equal size. The samples are matched by the order of appearance in each group.
    8084
    81 alternative: A character string specifying the alternative hypothesis: "two.sided" (default), "greater" or "less".
     85''alternative'': A character string specifying the alternative hypothesis: "two.sided" (default), "greater" or "less".
    8286
    8387''n.threads'': The number of threads to be used.