Changes between Version 4 and Version 5 of ScenarioEugene

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Timestamp:
08-11-10 14:53:06 (3 years ago)
Author:
e.vansomeren@…
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  • ScenarioEugene

    v4 v5  
    22 input toxocologic study in GSCF 
    33 
    4 == Description == 
    5  
     4== Background == 
    65The Netherlands Toxicogenomics Centre (NTC) will perform toxicological experiments for different toxicological endpoints (liver, carcino, repro, immuno etc.) using different model systems (different organisms, different cell systems, in vitro-in vivo-ex vivo) using different omics approaches (transcriptomics, miRNA, (phospho-)proteomics, metabolomics, imaging). NTC wants to use GSCF for full metadata capture and use it in combination with Array Track for data storage/visualization/analysis. Currently, NTC uses a website, called NTC Sharing, to collect information at study-level of all NTC experiments and store it in a simple Excel sheet. For GSCF, it should be possible to import this study-level information from NTC Sharing using the simple import wizard and a dedicated NTC Study template. 
    76 
     7== Description of Scenario == 
    88We want to test the scenario of importing study-level information for NTC. To this end, we have created three mock NTC experiment descriptions in an Excel sheet which has the exact same columns as used for NTC (see attachment "NTC_Experiment_test3.xls"): 
    99 * ''NTC_Experiment_test3.xls'': ?