Changes between Initial Version and Version 1 of LegacyWelcomePage


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Timestamp:
Jun 5, 2012, 10:30:18 AM (10 years ago)
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  • LegacyWelcomePage

    v1 v1  
     1
     2[[ProjectMembers]]
     3= Welcome to project gscf =
     4
     5GSCF is an open source project in which a number of universities, companies and academic consortia participate. Most notably [http://www.nugo.org NuGO] (The European Nutrigenomics Organization), [http://www.metabolomicscentre.nl NMC] (Netherlands Metabolomics Centre) and of course [http://www.nbic.nl NBIC] (Netherlands Bioinformatics Centre) which hosts the project. For more information see http://dbnp.org. GSCF is licensed under the [http://www.apache.org/licenses/LICENSE-2.0.html Apache 2.0 license].
     6
     7== Quick start ==
     8
     9'''Be sure to check out our [http://demo.dbnp.org online demo] (log in with username 'user' and password 'useR123!').''' If you want to try installing it yourself, the easiest way is to deploy the latest pre-compiled test war from the [https://trac.nbic.nl/gscf/downloads Downloads] section in a Java servlet container such as Tomcat. Be advised that this uses an in-memory database and will destroy your input at each restart! To learn more about how to set up your own database and custom configuration, read [https://trac.nbic.nl/gscf/wiki/QuickStart Quickstart]. If you want to set up your own dedicated GSCF server, read [https://trac.nbic.nl/gscf/wiki/QuickStartServer QuickStartServer].
     10
     11== Source access ==
     12You can do an anonymous readonly checkout using subversion as follows:
     13{{{
     14  svn co https://trac.nbic.nl/svn/gscf gscf
     15}}}
     16Write access is only available to registered developers.
     17
     18You can become a developer by [https://trac.nbic.nl/index/#register registering yourself] if you haven't already done so,
     19and requesting write access on the [https://trac.nbic.nl/mailman/listinfo/gscf-users gscf-users] mailing list.
     20
     21== Modules ==
     22GSCF stores only study design (meta)data for studies. However, most of the time, you will also have data that were measured on samples, such as transcriptomics, metabolomics or sequencing data. These can be stored in so called 'dbNP modules' and can then be dynamically attached to GSCF and the studies described in GSCF. Modules maintained in NBIC Trac are:
     23 * [https://trac.nbic.nl/nugoctdwebapp CTD]: a module for storing transcriptomics data
     24 * [https://trac.nbic.nl/nmcdsp DSP metabolomics module]: a module for storing metabolomics data
     25 * [https://trac.nbic.nl/ccm SAM]: a module for plain numerical data (e.g. clinical chemistry data)
     26 * [https://trac.nbic.nl/dbnp-metagenomics Mass Sequencing]: a module for 454 sequencing data
     27
     28== Mailing lists ==
     29This project provides the following mailing lists.
     30 * [https://trac.nbic.nl/mailman/listinfo/gscf-users gscf-users]: a list intended for general discussion on the project.
     31 * [https://trac.nbic.nl/mailman/listinfo/gscf-commits gscf-commits]: a list that receives source code commit messages.
     32 * [https://trac.nbic.nl/mailman/listinfo/gscf-devel gscf-devel]: a list intended for discussion among developers (subscription is restricted to registered developers).
     33
     34== Documents ==
     35Detailed information on the use of Javascript classes can be retrieved from [https://trac.nbic.nl/gscf/wiki/TechnicalDocumentation Technical Documentation]. [[br]]Other available documents are [https://trac.nbic.nl/gscf/wiki/IDEConfiguration IDE Configuration], [https://trac.nbic.nl/gscf/wiki/1.0CodeCleanup 1.0 Code Cleanup] [https://trac.nbic.nl/gscf/wiki/Troubleshooting Troubleshooting] and [https://trac.nbic.nl/gscf/wiki/DevelopmentGuidelines Development Guidelines].
     36
     37== Other NBIC software projects ==
     38All active NBIC software projects can be accessed from the [https://trac.nbic.nl/ project index].