Timeline


and

Jun 23, 2011:

2:59 PM Changeset [1938] by t.w.abma@…
- added comment
2:16 PM Changeset [1937] by robert@…
Removed debug statements
1:55 PM Changeset [1936] by robert@…
Added trace statements in assay exporter

Jun 22, 2011:

11:12 AM Changeset [1935] by t.w.abma@…
- fix for addToWriters()-method failing, seems that when the …

Jun 21, 2011:

12:23 PM Ticket #488 (Study wizard doesn't work in IE7) created by robert@…
Step 3 of the study create wizard doesn't work in IE7. Clicking on the …

Jun 20, 2011:

5:20 PM ServerAdministrationNBX edited by business@…
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4:43 PM ServerAdministrationNBX edited by business@…
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4:10 PM ServerAdministrationNBX edited by business@…
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3:49 PM ServerAdministrationNBX edited by business@…
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3:48 PM ServerAdministrationNBX edited by business@…
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3:25 PM ServerAdministrationNBX edited by business@…
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3:24 PM ServerAdministrationNBX edited by business@…
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3:20 PM ServerAdministrationNBX edited by business@…
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3:09 PM ServerAdministrationNBX created by business@…

Jun 17, 2011:

2:29 PM Changeset [1934] by work@…
tagging 0.8.4 release
2:28 PM Changeset [1933] by work@…
- up to 0.8.4
1:56 PM Changeset [1932] by robert@…
Another fix for #485
10:11 AM Changeset [1931] by robert@…
Users will be logged out from modules when logging out from GSCF now. …
9:28 AM Ticket #477 (Sample importer hangs on last step when event group names already exist) closed by business@…
duplicate: Hard to test now that the wizard also does a better job of checking …
9:18 AM Ticket #437 (Excel importer improvements) closed by business@…
fixed
9:04 AM Ticket #467 (install basefilters for all possible pages) closed by business@…
fixed: Fixed.
8:25 AM Ticket #480 (Error message when searching on field without filling in a value) closed by business@…
fixed: Resolved.

Jun 16, 2011:

2:27 PM Changeset [1930] by t.w.abma@…
- upgraded gdtImporter to 0.4.6.1
12:48 PM Ticket #465 (import samplelist won't proceed to final step) closed by janneke@…
worksforme
10:08 AM Ticket #486 (import wizard doesn't remember my settings in step1) closed by janneke@…
fixed

Jun 15, 2011:

5:54 PM Changeset [1929] by t.w.abma@…
- upgraded gdtImporter to 0.4.6.0 (dynamic settings on first page now …
1:55 PM Ticket #487 (Improve study edit icons) closed by work@…
wontfix: Won't fix, icons have already been changed, and I have discusses with …
1:30 PM Ticket #487 (Improve study edit icons) created by business@…
Put back study edit icons as discussed.
10:10 AM Ticket #486 (import wizard doesn't remember my settings in step1) created by janneke@…
When I import subjects and click back and forth through the import …
10:04 AM Ticket #452 (importer doesn't give excel preview) closed by janneke@…
fixed

Jun 14, 2011:

6:15 PM Ticket #485 (Integration of modules and the logout functionality could use some work.) created by taco@…
At the moment, a manual logout from GSCF does not invalidate sessions …
4:05 PM Changeset [1928] by t.w.abma@…
- upgraded gdtImporter to 0.4.5.9
3:36 PM Ticket #472 (time indication in confirmation step not correct) closed by janneke@…
fixed
2:04 PM Changeset [1927] by work@…
resolves #472
12:08 PM Ticket #484 (nullpointer exception on http://test.dbnp.org/) closed by work@…
worksforme: I don't see anything weird?
12:04 PM Ticket #484 (nullpointer exception on http://test.dbnp.org/) created by robert@…
I've deployed a new version of the sequencing module on test.dbnp.org. …
10:08 AM Ticket #483 (Implement authentication method on assay level) created by business@…
Right now modules can only find study details for all the assays in …
9:21 AM Changeset [1926] by robert@…
Default cache timeout should be higher than zero on production …

Jun 9, 2011:

6:03 PM Changeset [1925] by business@…
attempt to fix errors that occur at first ever run-app for gscf
5:51 PM Ticket #443 (samples are created too early) closed by work@…
wontfix: Currently, you can by importing your samples. The problem with this …
5:13 PM Changeset [1924] by work@…
- resolved #479
5:02 PM Changeset [1923] by work@…
- resolves # 469 - added tiptip support
2:10 PM Changeset [1922] by work@…
- removed all default instance configuration in favor of just one …
12:48 PM Changeset [1921] by t.w.abma@…
- added filter to BaseFilters? - added security annotation to all …
10:08 AM Ticket #466 (defaults in dropdown selection importer should be empty entry) closed by janneke@…
fixed

Jun 8, 2011:

4:09 PM Changeset [1920] by t.w.abma@…
- upgraded gdtImporter to 0.4.5.8
4:06 PM Changeset [1919] by robert@…
Removed debug statements
2:37 PM Changeset [1918] by work@…
- uncommented inline plugin gdtimporter in build config
11:24 AM Changeset [1917] by robert@…
Solved bugs in searching: - exception when searching for [any field in …

Jun 7, 2011:

4:53 PM Changeset [1916] by t.w.abma@…
- updated gdtImporter to 0.4.5.7
3:27 PM Ticket #436 (Duplicate 'invalid:' options added) closed by t.w.abma@…
fixed: Fixed in revision 360, existing logic was fine, but seemed that the …
2:25 PM Ticket #482 (enable live search in sample to assay step (step 5)) created by janneke@…
In my current study there are at least 1700 samples, and more will be …
12:05 PM Changeset [1915] by s.h.sikkema@…
gdtImporter 0.4.5.6
10:25 AM Ticket #481 (Improve querying) created by robert@…
- Restrict input for values when searching in stringlist/ontology …

Jun 6, 2011:

9:24 PM Ticket #480 (Error message when searching on field without filling in a value) created by business@…
If I login onto CI, and I enter any field and input nothing in the …
8:59 PM Changeset [1914] by kees.vanbochove@…
updated email registration message
5:30 PM ServerAdministration edited by work@…
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5:27 PM ServerAdministration edited by work@…
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5:11 PM ServerAdministration edited by work@…
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5:11 PM ServerAdministration edited by work@…
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5:11 PM ServerAdministration edited by work@…
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5:05 PM ServerAdministration edited by work@…
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4:58 PM ServerAdministration edited by work@…
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4:55 PM ServerAdministration edited by work@…
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4:50 PM ServerAdministration edited by work@…
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4:39 PM ServerAdministration edited by work@…
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4:32 PM ServerAdministration edited by work@…
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4:31 PM ServerAdministration edited by work@…
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4:30 PM ServerAdministration created by work@…
2:47 PM Changeset [1913] by robert@…
Fixed a bug in wildcard searches: now the system also searches through …
12:29 PM Ticket #468 (Please wait... after editing contacts takes quite long) closed by business@…
fixed: This problem is solved now, was probably caused by the other GSCF …
12:05 PM Ticket #462 (message of filling missing mappings can be removed) closed by business@…
fixed: Fixed now by updating status message.
12:04 PM Ticket #460 (import wizard asks for fields that are not required in study wizard) closed by business@…
duplicate: Duplicate of #462
12:00 PM Ticket #457 (Query on Template results in exception) closed by business@…
fixed: Tested this, works now.
11:59 AM Ticket #455 (Importer doesn't recognize subjects, without showing which one) closed by business@…
fixed: Upload of subject assignments should be done by adding a 'subject …
11:55 AM Ticket #479 (Add 'import data for this study' as edit option after completing a ...) created by business@…
When the study edit/create wizard is done, it offers an option to view …
11:31 AM Ticket #427 (samples page in study view is slow) closed by business@…
worksforme: Study 'linea23' (700+ samples) takes about 2s loading time in Firefox …
11:15 AM QuickStartServer edited by work@…
(diff)
11:04 AM Ticket #417 (Improve 'simple wizard' to also be able to automatically infer study design) closed by business@…
fixed: Done now via gdtimporter.
11:03 AM Ticket #478 (Seperate temporary uploads from permanent uploads, and make sure ...) created by work@…
Currently, there is no difference between file upload folders. Some …
10:51 AM Ticket #476 (samples wrongly deleted when deleting certain event group) closed by janneke@…
fixed
10:21 AM Changeset [1912] by work@…
Resolves #476

Jun 1, 2011:

7:46 PM Changeset [1911] by work@…
- changed delete eventgroup logic and added debugging
6:03 PM Changeset [1910] by kees.vanbochove@…
first step on the way to solve #476
5:32 PM Ticket #477 (Sample importer hangs on last step when event group names already exist) created by business@…
If you import samples, attach them to existing subjects, and the …
5:10 PM Ticket #476 (samples wrongly deleted when deleting certain event group) created by janneke@…
(Very much related to #448) I deleted an eventgroup which had also …
4:06 PM Changeset [1909] by work@…
Automated continuous integration commit of minified JS/CSS
4:05 PM Changeset [1908] by robert@…
Improvements in querying in order to be able to refine searches in a …
4:03 PM Changeset [1907] by robert@…
Bugfix with uploaded files with less than 9 characters
4:00 PM Changeset [1906] by work@…
changed icons and link order
3:55 PM Ticket #475 (create production database backup script) created by work@…
Create a script that dumps the PostgreSQL database and scp's it to an …
3:42 PM Changeset [1905] by work@…
- added support for direct edit jumps into wizard tabs, part one of …
3:35 PM Ticket #474 (Starting from new 0.8.3 checkout results in errors) closed by work@…
wontfix: Yeah, known issue... it is caused by the AST Transformations and the …
3:21 PM Ticket #474 (Starting from new 0.8.3 checkout results in errors) created by janneke@…
After a fresh checkout of 1904 and grails run-app, an exception is …[…]
3:20 PM New download gscf-0.8.3-www.war created by work@…
(44.2 MB) GSCF 0.8.3 production release (demo'd on the NMC conference)
2:29 PM Ticket #473 (add sample template in eventstable) created by janneke@…
In my study (pp2 on test.dbnp.org) I have a sampling event 'whole body …
2:06 PM Ticket #472 (time indication in confirmation step not correct) created by janneke@…
The starttime or endtimes in the confirmation step of the wizard are …
9:52 AM Ticket #471 (Add more information in samplename) created by janneke@…
Currently on ci samplenames include sampletissue template name if this …

May 31, 2011:

6:12 PM Ticket #470 (details link should use getAssayURL) created by tjeerd@…
When we look at a study in GSCF and select the assay tab a details …
3:00 PM Ticket #446 (advanced search for template name not correct) closed by janneke@…
fixed
12:25 PM Changeset [1904] by robert@…
Fixed a bug for case-insensitive search in 'complex' fields
11:01 AM Changeset [1903] by robert@…
Bugfix for searches in 'complex' fields with no results (#446)
10:44 AM Ticket #469 (when click edit, wizard should redirect to correct page) created by janneke@…
When I click edit from the study view in GSCF, I expect the edit …
10:09 AM Changeset [1902] by robert@…
Resolving issues with searching (#446)

May 30, 2011:

11:43 PM Ticket #468 (Please wait... after editing contacts takes quite long) created by business@…
If you edit contacts in the wizard and close the popup, you get Please …
11:36 PM Ticket #467 (install basefilters for all possible pages) created by business@…
I found out that /person/list is not protected by a login. This is bad …
3:01 PM Changeset [1901] by work@…
tagging 0.8.3 release
2:55 PM Ticket #466 (defaults in dropdown selection importer should be empty entry) created by janneke@…
All fields in the import wizard are required to specify in which study …
2:54 PM Changeset [1900] by work@…
- to 0.8.3
2:52 PM Changeset [1899] by work@…
- academic study template --> nmc study template
2:51 PM Changeset [1898] by work@…
- academic study template --> nmc study template
2:42 PM Changeset [1897] by work@…
- bugfixed the table editor
2:33 PM Changeset [1896] by work@…
- fixed table editor issues - upgraded gdt - upgraded gdtimporter

May 28, 2011:

8:58 PM Changeset [1895] by work@…
- table editor bugfix
9:42 AM Changeset [1894] by s.h.sikkema@…
gdtImporter version 0.4.5.4

May 27, 2011:

5:37 PM Changeset [1893] by work@…
- bye bye grom (for now!)
5:05 PM Changeset [1892] by work@…
- removed obsolete importer views
3:44 PM Changeset [1891] by work@…
- disabled ajax error div in importer and study wizard
3:35 PM Changeset [1890] by work@…
- removed development buttons - fixed samples view to show proper …
1:37 PM Ticket #439 (Events timeline in some studies not visible) closed by janneke@…
fixed
1:25 PM Changeset [1889] by work@…
- wizard events page previous link should behave the same as the rest …
12:59 PM Changeset [1888] by work@…
.solves #439
11:56 AM Changeset [1887] by s.h.sikkema@…
gdtImporter version 0.4.5.2
11:56 AM Changeset [1886] by work@…
- resolves issue #412 - make application title configurable through …
10:28 AM Changeset [1885] by s.h.sikkema@…
gdtImporter version 0.4.5.1

May 26, 2011:

3:19 PM Changeset [1884] by robert@…
Implemented getAuthorizationLevel rest method for assays
12:42 PM Ticket #465 (import samplelist won't proceed to final step) created by janneke@…
I tried to import samplelist, but the wizard won't proceed to the …
11:19 AM Ticket #464 (importer doesn't recognize excel file in IE7) created by janneke@…
When I use the importer in IE (run as IE7) (studies.nmcdsp.org) it …
10:26 AM Ticket #459 (selecting multiple subjects won't select all checkboxes) closed by janneke@…
fixed: (ok, I will, encountered this in chrome though) now it is working indeed
10:19 AM Ticket #461 (Error when searching on template) closed by robert@…
worksforme: Can't reproduce this error

May 25, 2011:

6:45 PM New download gscf-0.8.2-www.war created by work@…
(44.5 MB) GSCF 0.8.2 production release
6:29 PM Changeset [1883] by work@…
- gdt up to 0.0.51 to fix #459
5:59 PM Ticket #463 (change groupnames when importing events) created by janneke@…
When importing events, groupnames are created based on …
5:49 PM Ticket #459 (selecting multiple subjects won't select all checkboxes) reopened by janneke@…
5:27 PM Changeset [1882] by s.h.sikkema@…
Fixed an assayService unit test
4:32 PM Ticket #413 (Bugs when exporting assays) closed by robert@…
fixed: I've tested it as good as possible on CI, and it seemed to work. I …
4:25 PM Ticket #462 (message of filling missing mappings can be removed) created by janneke@…
I uploaded a list of events, and attached them to subjects. In the …
4:23 PM Ticket #461 (Error when searching on template) created by business@…
If I search on CI (logged in as user) with these criteria: * …
4:10 PM Changeset [1881] by work@…
tagging 0.8.2
4:05 PM Ticket #458 (multiple selection of subjects won't change all rows) closed by work@…
fixed: was already fixed
4:02 PM Ticket #459 (selecting multiple subjects won't select all checkboxes) closed by work@…
fixed: is already fixed.…
3:57 PM Changeset [1880] by work@…
- application up to 0.8.2
3:56 PM Ticket #454 (importer gives right suggestion, but I can't edit) closed by janneke@…
worksforme: Closing this ticket because wizard was right, there were 5 entities …
3:53 PM Changeset [1879] by work@…
- fixed issue with the advanced query button not being enabled
3:36 PM Changeset [1878] by work@…
- using gdt 0.0.50
3:05 PM Changeset [1877] by s.h.sikkema@…
gdtImporter 0.4.5
3:04 PM Ticket #460 (import wizard asks for fields that are not required in study wizard) created by janneke@…
I imported events by the importer and chose compound challenge. In …
2:50 PM Ticket #459 (selecting multiple subjects won't select all checkboxes) created by janneke@…
When I want to assign my subjects into groups (between step3 and 4 in …
2:35 PM Ticket #458 (multiple selection of subjects won't change all rows) created by janneke@…
When I import subjectdata (through import part of study data) and …
1:58 PM Changeset [1876] by s.h.sikkema@…
upgraded gdtImporter to 0.4.4
1:32 PM Ticket #453 (importer doesn't match sample with subjects) closed by business@…
fixed: This problem is now solved, samplelist input is confirmed working.
12:50 PM Changeset [1875] by work@…
- datatables is in conflict with gdtimporter, also it is not required …
11:46 AM Ticket #406 (template names should be unique) reopened by robert@…
How is this a duplicate of #314? This ticket is about template names, …
11:42 AM Ticket #427 (samples page in study view is slow) reopened by robert@…
This is not a non-issue. The view became slow with only 500 samples, …

May 24, 2011:

6:59 PM Ticket #434 (Nullpointer exception in sample validation) closed by work@…
worksforme
6:56 PM Ticket #388 (Add links to modules in GSCF) closed by work@…
fixed
6:54 PM Ticket #406 (template names should be unique) closed by work@…
duplicate: duplicate of #314
6:51 PM Changeset [1874] by work@…
- sort to lowercase
6:50 PM Ticket #73 (ability to save the filled field values of an entity into a 'preset') closed by work@…
invalid
6:45 PM Ticket #328 (Missing the option of multiple study deletion) closed by work@…
wontfix: Deleting multiple studies at once is a very rare usecase and for the …
6:42 PM Ticket #127 (take into account ontology versioning, make more use of Ontocat) closed by work@…
wontfix
6:40 PM Ticket #114 (Possibility to query studies/experiments ) closed by work@…
wontfix: opened 19 months ago... I think we already have querying tools that …
6:39 PM Ticket #342 (emails can't be sent from test.dbnp.org) closed by work@…
fixed
6:37 PM Ticket #427 (samples page in study view is slow) closed by work@…
wontfix: bit of a non issue... if you have lots of data everything becomes slow …
6:34 PM Ticket #456 (no clone option in 5.Assay step) closed by work@…
duplicate: partly duplicates #447, and solved in #447
6:26 PM Ticket #407 (add information (quetionmark) to assy step) closed by work@…
fixed: resolved in r1873
6:26 PM Changeset [1873] by work@…
- resolves #407
6:14 PM Changeset [1872] by work@…
- remove obsolete jquery-ui
6:13 PM Ticket #423 (in study wizard as in study overview sample order not consistent) closed by work@…
worksforme: cannot reproduce, looks fine here if I look up 001Linea on ci…
6:03 PM Changeset [1871] by work@…
- upgraded jquery plugin - upgraded jquery-ui - upgraded spring …
5:06 PM Changeset [1870] by work@…
- improved sample sorting for #423
5:05 PM Changeset [1869] by s.h.sikkema@…
using gdtImporter 0.4.3
4:56 PM Changeset [1868] by s.h.sikkema@…
removed obsolete function 'isSamplingEvent' from Event
3:22 PM Ticket #161 (GSCF Documentation) closed by work@…
wontfix
12:38 PM Ticket #447 (table-editor: create the possibility to allow the table-editor's multi ...) closed by work@…
fixed: improved feedback in r1867
12:38 PM Changeset [1867] by work@…
- improved feedback for #447
12:17 PM Changeset [1866] by robert@…
Fix for searching in template names (#446 and #457)
12:06 PM Ticket #448 (Make sample generation a user-aware step) closed by work@…
invalid: But I cannot do much with such a bug report... Closing issue as …
Note: See TracTimeline for information about the timeline view.