Timeline


and

May 24, 2011:

6:59 PM Ticket #434 (Nullpointer exception in sample validation) closed by work@…
worksforme
6:56 PM Ticket #388 (Add links to modules in GSCF) closed by work@…
fixed
6:54 PM Ticket #406 (template names should be unique) closed by work@…
duplicate: duplicate of #314
6:51 PM Changeset [1874] by work@…
- sort to lowercase
6:50 PM Ticket #73 (ability to save the filled field values of an entity into a 'preset') closed by work@…
invalid
6:45 PM Ticket #328 (Missing the option of multiple study deletion) closed by work@…
wontfix: Deleting multiple studies at once is a very rare usecase and for the …
6:42 PM Ticket #127 (take into account ontology versioning, make more use of Ontocat) closed by work@…
wontfix
6:40 PM Ticket #114 (Possibility to query studies/experiments ) closed by work@…
wontfix: opened 19 months ago... I think we already have querying tools that …
6:39 PM Ticket #342 (emails can't be sent from test.dbnp.org) closed by work@…
fixed
6:37 PM Ticket #427 (samples page in study view is slow) closed by work@…
wontfix: bit of a non issue... if you have lots of data everything becomes slow …
6:34 PM Ticket #456 (no clone option in 5.Assay step) closed by work@…
duplicate: partly duplicates #447, and solved in #447
6:26 PM Ticket #407 (add information (quetionmark) to assy step) closed by work@…
fixed: resolved in r1873
6:26 PM Changeset [1873] by work@…
- resolves #407
6:14 PM Changeset [1872] by work@…
- remove obsolete jquery-ui
6:13 PM Ticket #423 (in study wizard as in study overview sample order not consistent) closed by work@…
worksforme: cannot reproduce, looks fine here if I look up 001Linea on ci…
6:03 PM Changeset [1871] by work@…
- upgraded jquery plugin - upgraded jquery-ui - upgraded spring …
5:06 PM Changeset [1870] by work@…
- improved sample sorting for #423
5:05 PM Changeset [1869] by s.h.sikkema@…
using gdtImporter 0.4.3
4:56 PM Changeset [1868] by s.h.sikkema@…
removed obsolete function 'isSamplingEvent' from Event
3:22 PM Ticket #161 (GSCF Documentation) closed by work@…
wontfix
12:38 PM Ticket #447 (table-editor: create the possibility to allow the table-editor's multi ...) closed by work@…
fixed: improved feedback in r1867
12:38 PM Changeset [1867] by work@…
- improved feedback for #447
12:17 PM Changeset [1866] by robert@…
Fix for searching in template names (#446 and #457)
12:06 PM Ticket #448 (Make sample generation a user-aware step) closed by work@…
invalid: But I cannot do much with such a bug report... Closing issue as …

May 23, 2011:

6:11 PM Ticket #457 (Query on Template results in exception) created by business@…
Searching on sample template = Blood on CI results in: […]
5:28 PM Changeset [1865] by work@…
- resolves gscf #447 - gdt up to 0.0.49
4:36 PM Changeset [1864] by s.h.sikkema@…
in exporter: module error display improvements (ie. display on screen …
1:13 PM Ticket #451 (Error creating minimal study) closed by s.h.sikkema@…
fixed
1:05 PM Changeset [1863] by work@…
- resolves #451
12:45 PM Changeset [1862] by work@…
- fixed setup message on home page
12:26 PM Changeset [1861] by work@…
- gdt up to 0.0.48 (vertical scrollbars fixed)
12:25 PM Changeset [1860] by work@…
- whoops
12:20 PM Ticket #185 (Set up an initial version of the 'getting started' wizard) closed by work@…
fixed: - working setup wizard - changed default configuration - added title …
12:19 PM Changeset [1859] by work@…
- resolves #185
11:45 AM Changeset [1858] by work@…
- resolves #423
11:33 AM Ticket #442 (distinciton between event and sampling event in wizard is unclear) closed by janneke@…
fixed
11:23 AM Changeset [1857] by work@…
- resolves #423
11:12 AM Ticket #456 (no clone option in 5.Assay step) created by janneke@…
In the 5.Assay step of the study wizard there is no option to clone my …
11:00 AM Changeset [1856] by work@…
- resolves #442
10:43 AM Ticket #425 (total rewrite of table editor) closed by work@…
fixed: resolved in GDT [https://trac.nbic.nl/grails-plugins/changeset/323

May 20, 2011:

2:20 PM Ticket #455 (Importer doesn't recognize subjects, without showing which one) created by janneke@…
I imported a large samplelist, but the importer couldn't match these …
1:54 PM Ticket #454 (importer gives right suggestion, but I can't edit) created by janneke@…
I imported a long samplelist, with 2 identical rows. The importer …
11:17 AM Ticket #453 (importer doesn't match sample with subjects) created by janneke@…
I tried several options to match my samplelist import (see …
10:13 AM Ticket #452 (importer doesn't give excel preview) created by janneke@…
Import part of study design --> I select excel file and assign my …

May 19, 2011:

5:07 PM Ticket #449 (When fetching measurements from modules, GSCF should provide a sessionToken) closed by robert@…
fixed: The getMeasurements request had to be sent using POST, because the …
5:04 PM Changeset [1855] by t.w.abma@…
- upgraded gdtImporter to 0.4.2 (infer design functionality added for …
4:59 PM Ticket #438 (name (identifier) should be mroe above in dropdown select) closed by t.w.abma@…
fixed: Implemented in revision [315].
4:57 PM Ticket #451 (Error creating minimal study) created by s.h.sikkema@…
Create -> Create a new Study Template: Academic study Title: aaa …
4:42 PM Changeset [1854] by robert@…
Disabled module cache for CI
4:19 PM Changeset [1853] by s.h.sikkema@…
changed module communication HTTP method to "POST" to deal with …
4:02 PM Changeset [1852] by robert@…
Improved module communication when no parameters are given
10:58 AM Ticket #450 (import wizard should give suggestion of missing maps instead of error) created by janneke@…
When I import subjects into a study and my Excel files doesn't contain …
10:30 AM Ticket #449 (When fetching measurements from modules, GSCF should provide a sessionToken) created by robert@…
When retrieving assay information, GSCF calls the …

May 18, 2011:

6:50 PM Ticket #448 (Make sample generation a user-aware step) created by business@…
Sample generation remains buggy sometimes. When I read the code it …
6:48 PM Changeset [1851] by kees.vanbochove@…
added sample template to generated sample name to make it easier to …
5:25 PM Ticket #425 (total rewrite of table editor) reopened by janneke@…
In subject step, if there are two different subject templtaes (in …
3:09 PM Ticket #447 (table-editor: create the possibility to allow the table-editor's multi ...) created by janneke@…
Currently, you are only able to perform one controller action per …
2:43 PM Ticket #446 (advanced search for template name not correct) created by janneke@…
Searching for template (subject) name, for example awl;eg gives all …
1:21 PM Ticket #445 (I miss show/hide buttons in 4.Sample step) created by janneke@…
When creating a large study, with multiple samplingevents upon …

May 17, 2011:

1:53 PM Ticket #444 (order of events in events timeline not consistent) created by janneke@…
The order of events in the events timeline is not consistent. Every …
11:43 AM Ticket #443 (samples are created too early) created by janneke@…
Samples are not created when clicking 'next' in step 3, but earlier: …
10:57 AM Ticket #442 (distinciton between event and sampling event in wizard is unclear) created by janneke@…
When I add multiple events and sampling events it is now unclear from …
10:57 AM Changeset [1850] by robert@…
Made searching in text case insensitive

May 16, 2011:

5:50 PM Ticket #441 (If deleting assay, GSCF should check related assay data) created by janneke@…
If an assay is deleted in GSCF, it should check whether and what kind …
5:01 PM Changeset [1849] by t.w.abma@…
- upgraded gdtImporter to 0.4.1 (solves issues mentioned in ticket #437)
2:16 PM Ticket #440 (It should be possible to change the study owner) created by business@…
12:24 PM Changeset [1848] by work@…
- fixed /span /div issue in home view
11:51 AM Ticket #373 (Jumbar iFrame too small in webkit browsers from ci/test) closed by work@…
fixed
11:15 AM WikiStart edited by business@…
(diff)
11:14 AM WikiStart edited by business@…
(diff)
10:42 AM Ticket #439 (Events timeline in some studies not visible) created by janneke@…
On ci when I go to studylist and then to the following study: sergdx …
10:23 AM Ticket #410 (Exporting large excel files causes java.lang.OutOfMemoryError: Java ...) closed by business@…
fixed: Tested on CI, works fine now!

May 13, 2011:

6:43 PM Changeset [1847] by work@…
Automated continuous integration commit of minified JS/CSS
6:42 PM Changeset [1846] by work@…
- working version of the setup wizard, see #185
3:01 PM Ticket #438 (name (identifier) should be mroe above in dropdown select) created by janneke@…
In the subject importer (import part study design --> subjectdata) I …
12:52 PM Changeset [1845] by t.w.abma@…
- upgraded gdtImporter to 0.4.0, fixed long study titles shown in the …
12:27 PM Changeset [1844] by t.w.abma@…
- upgraded gdtImporter to 0.3.9 with quite some fixes from ticket #437
8:45 AM Ticket #330 (Modules (metabolomics, sam) ask for login twice by direct access) closed by s.h.sikkema@…
worksforme: seems to work fine now, closing ticket

May 12, 2011:

4:39 PM QuickStartServer edited by work@…
(diff)
4:35 PM New download gscf-0.8.1-www.war created by work@…
(44.5 MB) GSCF production release
3:57 PM Changeset [1843] by work@…
tagging 0.8.1 release
3:52 PM Changeset [1842] by work@…
- up to 0.8.1
3:46 PM Changeset [1841] by s.h.sikkema@…
removed obsolete UI references to Excel. Fixed study data numbers not …
3:23 PM Ticket #435 (Runtime exception when going from the studywizard to the assay exporter) closed by work@…
fixed: resolved in r1840
3:23 PM Changeset [1840] by work@…
- resolves #435
3:06 PM Ticket #410 (Exporting large excel files causes java.lang.OutOfMemoryError: Java ...) reopened by business@…
Just tested it with a Dutch Excel version, works mostly, except for …
2:45 PM Ticket #410 (Exporting large excel files causes java.lang.OutOfMemoryError: Java ...) closed by work@…
fixed
2:43 PM Ticket #298 (Nice to have: interpret to some extend some excel 'functions') closed by work@…
fixed
2:43 PM Ticket #278 (Allow alternative data/time formatting during import) closed by work@…
fixed
2:43 PM Ticket #93 (separate out input of Events, Sampling Events and EventGroups) closed by work@…
fixed
2:34 PM Ticket #431 (Submenus don't work properly) closed by work@…
fixed
2:33 PM Ticket #428 (getAssays without studyToken) closed by work@…
fixed: why do people not retest if asked so? closing issue due to lack of …
2:32 PM Ticket #432 (import part of study design doesn't work properly) closed by work@…
fixed
2:28 PM Ticket #418 (make database information visual) closed by work@…
fixed
2:24 PM Ticket #398 (unclearing group from sampling event still creates samples) closed by work@…
fixed
2:18 PM Ticket #405 ('responses' should define a proper content type) closed by work@…
fixed
2:17 PM Ticket #425 (total rewrite of table editor) closed by work@…
fixed
1:50 PM Changeset [1839] by t.w.abma@…
- upgraded gdTImporter to 0.3.8 (fixes table editor and wizardErrors popup)
11:34 AM Ticket #437 (Excel importer improvements) created by business@…
In the first step: * After entering the template editor, choices in …

May 11, 2011:

6:16 PM Changeset [1838] by s.h.sikkema@…
First version of study inferring in simple wizard (does not support …
5:41 PM Changeset [1837] by work@…
- fixed IE specific table editor issue, as IE does not accept …
4:35 PM Changeset [1836] by work@…
- solves in part #423
3:48 PM Changeset [1835] by work@…
- improved the table editor to support for a vertical slider which …
12:56 PM Changeset [1834] by s.h.sikkema@…
Study inferring ability (in progress)
12:24 PM Ticket #436 (Duplicate 'invalid:' options added) created by t.w.abma@…
When importing a subject and mapping the BMI-column to Species it …
12:37 AM WikiStart edited by work@…
(diff)
12:31 AM WikiStart edited by work@…
(diff)

May 10, 2011:

9:50 PM Changeset [1833] by work@…
- added table editor support for snapping headers in viewable area - …
8:34 PM Changeset [1832] by work@…
ignore mp4
4:36 PM Changeset [1831] by t.w.abma@…
- upgraded gdtImporter to 0.3.7 (Firefox 4 issue, property assignment …
3:44 PM Changeset [1830] by s.h.sikkema@…
Clarified error messages related to unreachable module; added …
12:15 PM Changeset [1829] by work@…
minor indent
11:36 AM Changeset [1828] by s.h.sikkema@…
Fixed only being able to export to tab delimited; fixed 'null' values …
11:20 AM Ticket #414 (SamplingEvent starttime is exported as seconds, not as human readable ...) closed by robert@…
fixed: This seems to be working OK. However, see the comments in #410 about …
11:00 AM Ticket #435 (Runtime exception when going from the studywizard to the assay exporter) created by robert@…
On CI: - go to Create -> Edit Study - choose from the menu Export -> …
10:58 AM Ticket #424 (Editing a study gives nullpointerexception) closed by robert@…
fixed
9:24 AM Ticket #429 (Remote logout) closed by tjeerd@…
fixed: seems to work, tested on the nbx3-ctd instance

May 9, 2011:

4:39 PM Changeset [1827] by s.h.sikkema@…
added different assay export possibilities (tab delimited, csv (comma …
3:55 PM Changeset [1826] by t.w.abma@…
- upgraded gdtImporter to 0.3.5 to support XLSX formulas
11:57 AM Changeset [1825] by work@…
- resolves #424
11:24 AM Changeset [1824] by work@…
Automated continuous integration commit of minified JS/CSS
11:23 AM Changeset [1823] by work@…
- fixed enhanced menu to make it work as expected
10:40 AM Changeset [1822] by robert@…
Bugfix for wildcard searches
10:24 AM Ticket #434 (Nullpointer exception in sample validation) created by robert@…
On CI, I've searched for a list of samples using the following URL: …

May 6, 2011:

10:33 PM WikiStart edited by business@…
(diff)
5:48 PM Ticket #422 (Error when performing action on search results on test.dbnp.org) closed by work@…
fixed
5:42 PM Changeset [1821] by robert@…
Added HTTP status 500 when getAssays is called without proper parameters
5:41 PM Changeset [1820] by robert@…
Adjusted querying process in order to improve speed with large amounts …
5:27 PM Changeset [1819] by work@…
- fixed issue with some columns not replicating - added support for …
3:51 PM Ticket #433 (reduce clicks to add a contact person) created by janneke@…
Since contact person is now a required field, it is a bit overdone to …
3:33 PM Changeset [1818] by work@…
- checkbox support was lacking from new table editor, added - gdt up …
1:44 PM Ticket #432 (import part of study design doesn't work properly) created by janneke@…
I created a new study on ci, 0001LINEA, and want to add subjects …
12:51 PM Ticket #431 (Submenus don't work properly) created by robert@…
In the r1812 revision, the menu has been restructured. However, the …
11:51 AM Ticket #430 (not all samples assigned to an assay in study overview) closed by janneke@…
fixed: In study overview I missed the notion after the samples '...and 106 …
9:02 AM Changeset [1817] by t.w.abma@…
- fixed typo in test method

May 5, 2011:

4:53 PM Changeset [1816] by robert@…
Added 'returnUrl' parameter to /logout/remote to redirect the user …
4:50 PM Changeset [1815] by robert@…
Commit to trigger CI deployment
4:33 PM Changeset [1814] by robert@…
Trigger CI deployment
1:20 PM Ticket #430 (not all samples assigned to an assay in study overview) created by janneke@…
I have a number of samples (around 15 subjects, with 4 samples each) …
1:01 PM Changeset [1813] by robert@…
Added possibility to ask for all assays for the given module (without …
11:09 AM Ticket #429 (Remote logout) created by tjeerd@…
For login a parameter returnURL is available to enable remote login. …
11:07 AM Ticket #428 (getAssays without studyToken) created by tjeerd@…
A module is only interested in the studies and assays that are …

May 4, 2011:

5:25 PM Changeset [1812] by kees.vanbochove@…
restructured navigation menu, added debug line for adding users
4:39 PM Changeset [1811] by s.h.sikkema@…
study design inferring in progress
4:32 PM Changeset [1810] by work@…
- added minified css / js support - gdt up to 0.0.41 (minified)
3:43 PM Ticket #416 (GSCF becomes very slow with large studies) closed by work@…
duplicate: moved that one into #427
3:42 PM Ticket #427 (samples page in study view is slow) created by work@…
(from #416) the samples tab in the show study page is quite slow
3:37 PM Ticket #416 (GSCF becomes very slow with large studies) reopened by robert@…
Not only the table editor is slow, "Also the samples tab in the show …
3:20 PM Changeset [1809] by work@…
- new rewritten table editor (gdt 0.0.40)
2:43 PM Ticket #426 (multiple selection doesn't work) closed by work@…
wontfix: not a bug, ci is unstable do to #425
2:42 PM Changeset [1808] by work@…
- developmental commit of table editor
2:13 PM Ticket #426 (multiple selection doesn't work) created by janneke@…
In creating events I select all rows and try to assign 4 events to …
2:08 PM Ticket #309 (Multiselect delete in table editor does not work) closed by work@…
duplicate
2:07 PM Ticket #370 (add multiple navigation slides and column headers) closed by work@…
duplicate: duplicate to #425
2:07 PM Ticket #416 (GSCF becomes very slow with large studies) closed by work@…
duplicate: duplicate to #425
2:06 PM Ticket #425 (total rewrite of table editor) created by work@…
In order to make the table editor faster and combine the table setup …
1:06 PM Changeset [1807] by work@…
- developmental commit of table editor
12:41 PM Changeset [1806] by work@…
- reverted latest change.... seems like webtests + contact ajax is not …
12:40 PM Ticket #381 (table editor scrollbar should also be on top) closed by business@…
duplicate: Duplicate of #370, see there
12:35 PM Changeset [1805] by work@…
- fixed webtests?
11:45 AM Changeset [1804] by work@…
- fixed webtests
9:53 AM Changeset [1803] by s.h.sikkema@…
Improved CSV export

May 3, 2011:

2:33 PM Changeset [1802] by robert@…
Solved styling issues with required contacts in simplewizard, …
1:41 PM Ticket #424 (Editing a study gives nullpointerexception) created by robert@…
The edit study wizard gives a nullpointer exception after choosing …

May 2, 2011:

6:08 PM Changeset [1801] by t.w.abma@…
- upgraded gdtImporter to 0.3.4 (support for formula cells in Excel …
5:03 PM Changeset [1800] by robert@…
Implemented searching in 'all fields'
12:38 PM Changeset [1799] by robert@…
Adjusted assay exporting to use CSV export method
11:55 AM Changeset [1798] by robert@…
After searching, several actions can be performed on search results. …
11:45 AM Ticket #409 (make metabolomics module more general) closed by business@…
invalid: Tickets for this should be created in the metabolomics module …
9:57 AM Ticket #423 (in study wizard as in study overview sample order not consistent) created by janneke@…
When I create a study with subjects and sampling events, I get a list …

Apr 29, 2011:

1:58 PM Ticket #422 (Error when performing action on search results on test.dbnp.org) created by robert@…
I've sought on test.dbnp.org for all samples with study.title contains …
1:17 PM Changeset [1797] by t.w.abma@…
- upgraded gdtImporter to 0.3.3
9:41 AM Ticket #420 (Ontology search doesn't work in chrome) closed by janneke@…
fixed

Apr 28, 2011:

4:15 PM Ticket #419 (horizontal scrollbar doesn't react when navigating with Tab key) closed by work@…
wontfix: As this is not really easy to solve, and not that big of an issue (if …
4:02 PM Changeset [1796] by work@…
- gdt to 0.0.39, resolves #420
3:57 PM Changeset [1795] by t.w.abma@…
- upgraded gdtImporter to 0.3.2 (added more flexible dataformatting)
3:33 PM Changeset [1794] by work@…
- added support for fuzzymatching (resolves #418) - removed debug …
3:32 PM Ticket #421 (Ontology search doesn't work in chrome) closed by work@…
duplicate: duplicate to #420
2:06 PM Ticket #374 (GSCF 0.7.0 test war release: Homepage has Error 500: Executing action ...) closed by taco@…
fixed: On the same machine, using the gscf-0.8.0-www release, this error no …
12:50 PM Ticket #421 (Ontology search doesn't work in chrome) created by janneke@…
I tried to add an ontology term for species (in subject step), but the …
12:50 PM Ticket #420 (Ontology search doesn't work in chrome) created by janneke@…
I tried to add an ontology term for species (in subject step), but the …
11:53 AM Ticket #353 (Subject species shouldn't be required) closed by janneke@…
fixed

Apr 27, 2011:

2:40 PM Changeset [1793] by robert@…
After the problems with SVN and the r1791 commit from Jeroen, the …
2:35 PM Changeset [1792] by robert@…
Adjusted study view to show only a few samples if the list is very large
12:10 PM Changeset [1791] by work@…
RE-committed Robert's change after the SVN was fixed, original commit …

Apr 26, 2011:

2:12 PM Ticket #419 (horizontal scrollbar doesn't react when navigating with Tab key) created by janneke@…
The horizontal scrollbar in the (sampling)events step doesn't slide …
1:59 PM Ticket #418 (make database information visual) created by jildau.bouwman@…
Data would be easier queriable and double entry of information would …
11:11 AM Ticket #399 (File import upload page, study should show code AND title) closed by t.w.abma@…
fixed: Fixed. Study domain in GSCF now returns code and title when the …
10:01 AM Changeset [1786] by robert@…
Added Environmental Ontology (1069) to the subject.species field, to …
9:32 AM Ticket #411 (Refactor style sheets) closed by robert@…
fixed
Note: See TracTimeline for information about the timeline view.