Timeline


and

06-05-11:

22:33 WikiStart edited by business@…
(diff)
17:48 Ticket #422 (Error when performing action on search results on test.dbnp.org) closed by work@…
fixed
17:42 Changeset [1821] by robert@…
Added HTTP status 500 when getAssays is called without proper parameters
17:41 Changeset [1820] by robert@…
Adjusted querying process in order to improve speed with large amounts of …
17:27 Changeset [1819] by work@…
- fixed issue with some columns not replicating - added support for …
15:51 Ticket #433 (reduce clicks to add a contact person) created by janneke@…
Since contact person is now a required field, it is a bit overdone to …
15:33 Changeset [1818] by work@…
- checkbox support was lacking from new table editor, added - gdt up to …
13:44 Ticket #432 (import part of study design doesn't work properly) created by janneke@…
I created a new study on ci, 0001LINEA, and want to add subjects and/or …
12:51 Ticket #431 (Submenus don't work properly) created by robert@…
In the r1812 revision, the menu has been restructured. However, the …
11:51 Ticket #430 (not all samples assigned to an assay in study overview) closed by janneke@…
fixed: In study overview I missed the notion after the samples '...and 106 more', …
09:02 Changeset [1817] by t.w.abma@…
- fixed typo in test method

05-05-11:

16:53 Changeset [1816] by robert@…
Added 'returnUrl' parameter to /logout/remote to redirect the user after …
16:50 Changeset [1815] by robert@…
Commit to trigger CI deployment
16:33 Changeset [1814] by robert@…
Trigger CI deployment
13:20 Ticket #430 (not all samples assigned to an assay in study overview) created by janneke@…
I have a number of samples (around 15 subjects, with 4 samples each) …
13:01 Changeset [1813] by robert@…
Added possibility to ask for all assays for the given module (without …
11:09 Ticket #429 (Remote logout) created by tjeerd@…
For login a parameter returnURL is available to enable remote login. This …
11:07 Ticket #428 (getAssays without studyToken) created by tjeerd@…
A module is only interested in the studies and assays that are relevant to …

04-05-11:

17:25 Changeset [1812] by kees.vanbochove@…
restructured navigation menu, added debug line for adding users
16:39 Changeset [1811] by s.h.sikkema@…
study design inferring in progress
16:32 Changeset [1810] by work@…
- added minified css / js support - gdt up to 0.0.41 (minified)
15:43 Ticket #416 (GSCF becomes very slow with large studies) closed by work@…
duplicate: moved that one into #427
15:42 Ticket #427 (samples page in study view is slow) created by work@…
(from #416) the samples tab in the show study page is quite slow
15:37 Ticket #416 (GSCF becomes very slow with large studies) reopened by robert@…
Not only the table editor is slow, "Also the samples tab in the show study …
15:20 Changeset [1809] by work@…
- new rewritten table editor (gdt 0.0.40)
14:43 Ticket #426 (multiple selection doesn't work) closed by work@…
wontfix: not a bug, ci is unstable do to #425
14:42 Changeset [1808] by work@…
- developmental commit of table editor
14:13 Ticket #426 (multiple selection doesn't work) created by janneke@…
In creating events I select all rows and try to assign 4 events to both …
14:08 Ticket #309 (Multiselect delete in table editor does not work) closed by work@…
duplicate
14:07 Ticket #370 (add multiple navigation slides and column headers) closed by work@…
duplicate: duplicate to #425
14:07 Ticket #416 (GSCF becomes very slow with large studies) closed by work@…
duplicate: duplicate to #425
14:06 Ticket #425 (total rewrite of table editor) created by work@…
In order to make the table editor faster and combine the table setup code …
13:06 Changeset [1807] by work@…
- developmental commit of table editor
12:41 Changeset [1806] by work@…
- reverted latest change.... seems like webtests + contact ajax is not …
12:40 Ticket #381 (table editor scrollbar should also be on top) closed by business@…
duplicate: Duplicate of #370, see there
12:35 Changeset [1805] by work@…
- fixed webtests?
11:45 Changeset [1804] by work@…
- fixed webtests
09:53 Changeset [1803] by s.h.sikkema@…
Improved CSV export

03-05-11:

14:33 Changeset [1802] by robert@…
Solved styling issues with required contacts in simplewizard, introduced …
13:41 Ticket #424 (Editing a study gives nullpointerexception) created by robert@…
The edit study wizard gives a nullpointer exception after choosing which …

02-05-11:

18:08 Changeset [1801] by t.w.abma@…
- upgraded gdtImporter to 0.3.4 (support for formula cells in Excel and …
17:03 Changeset [1800] by robert@…
Implemented searching in 'all fields'
12:38 Changeset [1799] by robert@…
Adjusted assay exporting to use CSV export method
11:55 Changeset [1798] by robert@…
After searching, several actions can be performed on search results. These …
11:45 Ticket #409 (make metabolomics module more general) closed by business@…
invalid: Tickets for this should be created in the metabolomics module …
09:57 Ticket #423 (in study wizard as in study overview sample order not consistent) created by janneke@…
When I create a study with subjects and sampling events, I get a list of …

29-04-11:

13:58 Ticket #422 (Error when performing action on search results on test.dbnp.org) created by robert@…
I've sought on test.dbnp.org for all samples with study.title contains …
13:17 Changeset [1797] by t.w.abma@…
- upgraded gdtImporter to 0.3.3
09:41 Ticket #420 (Ontology search doesn't work in chrome) closed by janneke@…
fixed

28-04-11:

16:15 Ticket #419 (horizontal scrollbar doesn't react when navigating with Tab key) closed by work@…
wontfix: As this is not really easy to solve, and not that big of an issue (if you …
16:02 Changeset [1796] by work@…
- gdt to 0.0.39, resolves #420
15:57 Changeset [1795] by t.w.abma@…
- upgraded gdtImporter to 0.3.2 (added more flexible dataformatting)
15:33 Changeset [1794] by work@…
- added support for fuzzymatching (resolves #418) - removed debug lines - …
15:32 Ticket #421 (Ontology search doesn't work in chrome) closed by work@…
duplicate: duplicate to #420
14:06 Ticket #374 (GSCF 0.7.0 test war release: Homepage has Error 500: Executing action ...) closed by taco@…
fixed: On the same machine, using the gscf-0.8.0-www release, this error no …
12:50 Ticket #421 (Ontology search doesn't work in chrome) created by janneke@…
I tried to add an ontology term for species (in subject step), but the …
12:50 Ticket #420 (Ontology search doesn't work in chrome) created by janneke@…
I tried to add an ontology term for species (in subject step), but the …
11:53 Ticket #353 (Subject species shouldn't be required) closed by janneke@…
fixed

27-04-11:

14:40 Changeset [1793] by robert@…
After the problems with SVN and the r1791 commit from Jeroen, the subjects …
14:35 Changeset [1792] by robert@…
Adjusted study view to show only a few samples if the list is very large
12:10 Changeset [1791] by work@…
RE-committed Robert's change after the SVN was fixed, original commit log …

26-04-11:

14:12 Ticket #419 (horizontal scrollbar doesn't react when navigating with Tab key) created by janneke@…
The horizontal scrollbar in the (sampling)events step doesn't slide along …
13:59 Ticket #418 (make database information visual) created by jildau.bouwman@…
Data would be easier queriable and double entry of information would be …
11:11 Ticket #399 (File import upload page, study should show code AND title) closed by t.w.abma@…
fixed: Fixed. Study domain in GSCF now returns code and title when the …
10:01 Changeset [1786] by robert@…
Added Environmental Ontology (1069) to the subject.species field, to fix …
09:32 Ticket #411 (Refactor style sheets) closed by robert@…
fixed

23-04-11:

23:23 Ticket #417 (Improve 'simple wizard' to also be able to automatically infer study ...) created by business@…
For NMC studies, it is important that the study design can be …
23:04 Ticket #378 (Show template description when choosing template) closed by business@…
worksforme: Works for me.

21-04-11:

15:49 Changeset [1790] by s.h.sikkema@…
fixed bug where preview of small export would fail; changed assay excel …
14:58 Changeset [1789] by t.w.abma@…
- upgraded gdtImporter to 0.3.1 (SpringSecurity? was disabled at …
14:44 Changeset [1788] by t.w.abma@…
- upgraded gdtImporter to 0.3.0
14:33 Changeset [1787] by t.w.abma@…
- added null-check to Study domain when using toString()-method
14:08 Changeset [1785] by t.w.abma@…
- changed toString()-method of Study, now returns code AND title (required …
12:19 Changeset [1784] by t.w.abma@…
- added configuration variables for gdtImporter - upgraded gdtImporter …

20-04-11:

16:31 Changeset [1783] by robert@…
Extended the time a user is logged in, in order to facilitate huge …
14:27 Changeset [1782] by work@…
- resolved #93, improved seperation of events / sampling events in events …
12:05 Ticket #349 (extend GDT with dynamic addToXXX method for template entities) closed by work@…
wontfix: closing, out of scope and the necessity is gone…
11:57 Changeset [1781] by robert@…
Added support in RestController? for distinction between administrators and …
11:18 Changeset [1780] by robert@…
Improved querying user interface

19-04-11:

17:36 Changeset [1779] by work@…
- set proper content-type header for reltime in the wizard
17:05 Changeset [1778] by work@…
- added i18n message for study title uniqueness
16:54 Changeset [1777] by work@…
- first() does not seem to work properly on hibernate lazily fetched map …
16:36 Ticket #401 (study title should be unique) closed by work@…
fixed: resolved in r1776
16:35 Changeset [1776] by work@…
- resolves #401, study title should be unique
16:12 Ticket #400 (Minimal number of contacts) closed by work@…
fixed: resolved in r1775
16:12 Changeset [1775] by work@…
- resolves #400, study should contain at least one contact
15:28 Changeset [1774] by work@…
- resolves #398
11:55 Ticket #397 (samples not updated correctly after change in group) closed by work@…
worksforme: cannot reproduce on development, nor on ci…

18-04-11:

12:32 Changeset [1773] by robert@…
Solved redirect bug in login controller
12:25 Changeset [1772] by robert@…
Refactored stylesheets to avoid duplicate code. See #411
12:21 Ticket #365 (date_created and last_undated) closed by work@…
fixed: this has already been resolved in the database upgrade script
12:12 Ticket #300 (Importing many (e.g. 187) subjects makes table editor unresponsive) closed by work@…
duplicate: duplicate of #416
12:06 Ticket #391 (In add/modify persons, the 'create' button is small, user will click ...) closed by work@…
wontfix: non issue, closing ticket…
11:29 Ticket #390 (cannot add subject species) closed by work@…
worksforme
11:28 Ticket #387 (Remove assayModule.platform field) closed by work@…
fixed
11:27 Changeset [1771] by robert@…
Fixed bug with stylesheet in template importer
11:19 Ticket #369 (Pressing enter in Assay step deletes assay) closed by work@…
fixed
11:07 Ticket #394 (change header for dedicated instances such as NMC DSP) closed by work@…
fixed

13-04-11:

16:43 Ticket #416 (GSCF becomes very slow with large studies) created by robert@…
With large number of samples (e.g. about 500 in …
16:36 Ticket #415 (Add possibility to add extra samples in study wizard) created by robert@…
Samples can only be added by creating subjects and adding sampling events. …
16:23 Ticket #375 (IE7 styling issues) closed by robert@…
fixed: Everything seems to be working again in 0.8.0. Maybe it had something to …
14:57 Changeset [1770] by robert@…
Improved logging in from modules
11:51 Changeset [1769] by robert@…
Added fields to study view and fixed strange values for parentEvent in …
11:11 Ticket #414 (SamplingEvent starttime is exported as seconds, not as human readable ...) created by robert@…
SamplingEvent? starttime is exported in the assay exporter as number of …
11:09 Ticket #386 (HTML Doctype is not used on CI or test.dbnp.org, but is in development ...) closed by robert@…
fixed: Seems to be working after configuration change.
11:04 Ticket #413 (Bugs when exporting assays) created by robert@…
Three bugs in exporting assays: - A javascript error occurs when logged in …

12-04-11:

16:46 Ticket #412 (If username is not filled in, and Register button is pressed, the Register ...) created by business@…
16:43 Ticket #411 (Refactor style sheets) created by robert@…
In r1739, new style sheets have been created for nmcdsp and dbnp. But a …
16:21 Changeset [1768] by robert@…
Solved small issues with study view
16:10 Changeset [1767] by s.h.sikkema@…
testing old jumpbar version 0.1.5
15:55 Changeset [1766] by s.h.sikkema@…
new jumpbar version 0.1.9
15:47 Changeset [1765] by work@…
- added anchor
15:36 Changeset [1764] by work@…
- created an info controller displaying application / plugin information …
15:34 Ticket #402 (gdtimporter: add 'ok' button in 'load match' dialog) closed by t.w.abma@…
fixed: Was solved this morning, works here.
15:16 Changeset [1763] by work@…
- added quickstart guides
15:04 Changeset [1762] by work@…
- apparently, the hostname on dbnp.org is nbx14 and not dbnp.org.…
14:36 Changeset [1761] by s.h.sikkema@…
assay excel export now writes to a temporary file first to prevent memory …
14:18 Ticket #410 (Exporting large excel files causes java.lang.OutOfMemoryError: Java heap ...) created by s.h.sikkema@…
If you try to export an assay with a lot of data, a …
14:05 Changeset [1760] by work@…
tagging 0.8.0 release
14:03 Changeset [1759] by work@…
- to 0.8.0
13:12 Changeset [1758] by work@…
- makes no sense showing a statistics box if there is nothing to show
13:07 Changeset [1757] by s.h.sikkema@…
fixed typo; updated jumpbar
12:43 Changeset [1756] by work@…
- makes no sense showing a statistics box if there is nothing to show
12:27 Changeset [1755] by work@…
- makes no sense showing a statistics box if there is nothing to show
12:14 Changeset [1754] by work@…
- removed default user from www config - trying to fix the homecontroller …
12:04 Changeset [1753] by work@…
homecontroller breaks if database is empty

11-04-11:

16:32 Ticket #409 (make metabolomics module more general) created by jildau.bouwman@…
Based on new peaklists (will be delivered by PIs) the metabolomics module …
16:16 Ticket #408 (find a way to facilitate sample name usage) created by jildau.bouwman@…
Currently the study create wizard automatically generates sample names. …
16:02 Changeset [1752] by robert@…
Updated assay export to be able to export multiple assays or studies (in …
16:01 Ticket #395 (beta importer doesn't recognize excel format) closed by t.w.abma@…
fixed: File was deleted too quick in the import wizard flow, is now deleted in …
15:53 Ticket #407 (add information (quetionmark) to assy step) created by jildau.bouwman@…
The name and module field in the assay step of the create study wizard do …
15:43 Ticket #406 (template names should be unique) created by jildau.bouwman@…
15:42 Ticket #405 ('responses' should define a proper content type) created by work@…
In a lot of places responses are being used, however most of them do not …
15:41 Ticket #404 (case insensitive ordering of template fields) created by jildau.bouwman@…
The template fields are now ordered: first capitals in alphabetical order …
15:34 Ticket #403 (TemplateEditor: the available fields should somehow show which ones are ...) created by work@…
If you want to add a template field which is set to 'required' to a …
15:30 Ticket #402 (gdtimporter: add 'ok' button in 'load match' dialog) created by work@…
When loading a stored 'match' configuration, you have to press the 'Load' …
15:25 Ticket #401 (study title should be unique) created by work@…
PI meeting feedback --> study title should be unique (note that this may …
15:18 Ticket #400 (Minimal number of contacts) created by t.w.abma@…
It should be obligatory to fill in at least one contact for a study.
15:01 Changeset [1751] by s.h.sikkema@…
new jumpbar (temp height fix)
14:06 Changeset [1750] by s.h.sikkema@…
new jumpbar version (0.1.6)
13:46 Ticket #399 (File import upload page, study should show code AND title) created by t.w.abma@…
File import upload page, study selector should show code AND title intead …
13:31 Changeset [1749] by t.w.abma@…
- upgraded gdtImporter to version 0.2.6
13:20 Ticket #396 (no notification if startdate is invalid) closed by jannekevdp@…
fixed
13:11 Changeset [1748] by work@…
- keydown instead of keypress
13:05 Changeset [1747] by t.w.abma@…
- reverting gdtImporter to version 0.2.4
13:00 Ticket #398 (unclearing group from sampling event still creates samples) created by jannekevdp@…
First, in study 10101 (test.nmcdsp.org) I created 2 groups. Subject 1-3 …
12:22 Ticket #397 (samples not updated correctly after change in group) created by jannekevdp@…
I created a new study in test.nmcdsp.org (study code is 30303), with 2 …
12:19 Changeset [1746] by t.w.abma@…
- reverting gdtImporter to version 0.2.3
12:16 Changeset [1745] by work@…
- resolves #396, disabled all key presses altogether in all fields that …
11:54 Changeset [1744] by work@…
- wizard 'studyPrevious' page did not handle 'quickSave'
11:49 Ticket #396 (no notification if startdate is invalid) created by jannekevdp@…
I created a new study in test.nmcdsp.org and filled in startDate as Code …
11:45 Changeset [1743] by work@…
- added plugin information for ci
11:27 Changeset [1742] by t.w.abma@…
- new gdtImporter 0.2.5 released / added in application.properties (file …
10:55 Changeset [1741] by work@…
- changed file upload definition logic
10:53 Changeset [1740] by work@…
- changed header image
10:46 Changeset [1739] by work@…
- added style definitions for nmcdsp.org and dbnp.org

08-04-11:

17:31 Ticket #395 (beta importer doesn't recognize excel format) created by jannekevdp@…
I try to import excel file in beta importer (ci.nmcdsp.org) As a preview …
17:24 Ticket #394 (change header for dedicated instances such as NMC DSP) created by business@…
Currently the header shows 'General Study Capture Framework', for specific …
17:17 Ticket #358 (simple wizard gives error when importing 'random' data) closed by jannekevdp@…
fixed: can't reproduce either
16:51 Ticket #384 (deleting contact person not possible) closed by jannekevdp@…
fixed
16:49 Changeset [1738] by work@…
fixed indentation
16:47 Ticket #383 (should have multiple deletion of subjects) closed by work@…
duplicate: duplicate to #309 and #310
16:43 Changeset [1737] by work@…
- gdt to 0.0.33, explicetly removing non-overlapping template fields upon …
16:03 Changeset [1736] by work@…
- resolves issue #384, studyPerson, publications and users are not deleted …
15:43 Changeset [1735] by work@…
- removed debug line
15:40 Changeset [1734] by work@…
- hudson tests fail because 'log' is not available... changed to println …
15:24 Changeset [1733] by work@…
- uncommented study save try/catch block
15:16 Ticket #367 (Subject - event group assignments disappear) closed by business@…
fixed: Tested with SVN HEAD and a tunnel to test.nmcdsp.org database, seems …
14:29 Ticket #393 (adding species term only possible once) closed by work@…
worksforme: Looking at the CI database as well as the species select, the Mus …
14:13 Changeset [1732] by work@…
- resolved an issue with identity (ticket #367)
14:08 Ticket #367 (Subject - event group assignments disappear) reopened by business@…
13:17 Changeset [1731] by robert@…
Bugfix with the order of samples in the assay exporter
12:07 Changeset [1730] by s.h.sikkema@…
Excel export uses getMeasurements rest call; made assay export visible for …
11:30 Changeset [1729] by robert@…
Fixed bug in simpletox exporter with exporting multiple studies.

07-04-11:

16:02 Changeset [1728] by s.h.sikkema@…
Changed max parameter from type int to Integer
15:57 Changeset [1727] by robert@…
Adjusted assayservice to make exporting assays work with the sequencing …
15:21 Changeset [1726] by t.w.abma@…
- added new gdtImporter version (0.2.4) to application.properties
15:18 Changeset [1725] by work@…
- gdt to 0.0.31
14:50 Changeset [1724] by s.h.sikkema@…
changed Study.give[Readable,Writable]Studies to make max parameter …
14:45 Changeset [1723] by work@…
- fixed failing assaytests
14:26 Ticket #235 (Retrieving publications from pubmed can't handle non-ascii characters) closed by work@…
fixed
14:25 Changeset [1722] by work@…
- fixed UTF-8 issues (issue #235 )
13:57 Changeset [1721] by work@…
- using new gdtimporter
13:35 Changeset [1720] by work@…
- upgraded ajaxflow, gdt and gdtimporter to fix issues with gdtimporter …
11:43 Ticket #192 (Add Datatype user-extendible String list (as in ontology)) closed by robert@…
fixed: I guess so too. The creation of database tables is handled by grails …
11:36 Ticket #392 (In the simple wizard, after choosing add/modify in one of the dropdowns, ...) closed by robert@…
fixed: Already fixed in trunk. Please wait for deployment
11:21 Ticket #243 (Application shows multiple languages mixed up) closed by work@…
fixed: Changed all Dutch i18n texts into English in r1719
11:21 Changeset [1719] by work@…
- changed Dutch texts into English.... #243
10:52 Changeset [1718] by work@…
commented out the try catch block to debug properly
10:39 Ticket #393 (adding species term only possible once) created by jannekevdp@…
In ci.nmcdsp.org I tried to add subject species (subject step in wizard, …

06-04-11:

17:24 Changeset [1717] by robert@…
Implemented searching for 'any field' in advanced query
16:40 Changeset [1716] by s.h.sikkema@…
new gdtImporter; new jumpbar; excel export to webflow; fixed spelling …
16:19 Ticket #331 (Preview of Excel workbook) closed by t.w.abma@…
fixed: Is implemented now. Instead of tabular preview, the user can choose the …
16:18 Ticket #360 (importer: first page should autodetect sheets after upload and ask the ...) closed by t.w.abma@…
fixed: Is implemented now, after uploading an Excel file the amount of sheets are …
15:55 Ticket #392 (In the simple wizard, after choosing add/modify in one of the dropdowns, ...) created by business@…
15:54 Ticket #391 (In add/modify persons, the 'create' button is small, user will click ...) created by business@…
In add/modify persons, a user is tempted to click 'close' instead of …
14:00 Ticket #249 (Make importer capable of updating records) closed by s.h.sikkema@…
fixed
13:21 Ticket #341 (Rewrite and clean up importer code) closed by t.w.abma@…
fixed: Importer Wizard has been rewritten/moved into a separate plugin called …
13:04 Ticket #385 (no excel file button) closed by t.w.abma@…
fixed: Fixed in GSCF, if environment check is "test" it uses a hidden fieldname, …
12:32 Ticket #390 (cannot add subject species) created by jannekevdp@…
While editing an existing study, I got the following error when trying to …
12:30 Changeset [1715] by work@…
- removed debug lines
12:00 Changeset [1714] by work@…
using getText instead
11:37 Changeset [1713] by work@…
debugging url on ci
11:36 Changeset [1712] by robert@…
Solved user registration bugs: changing password didn't work and lost …
11:30 Changeset [1711] by work@…
xml instead of html
11:26 Changeset [1710] by work@…
- response syntax was wrong?
11:22 Changeset [1709] by work@…
Automated continuous integration commit of minified JS/CSS
11:21 Changeset [1708] by work@…
- forcing UTF8 headers everywhere through the layouts
11:05 Changeset [1707] by work@…
Automated continuous integration commit of minified JS/CSS
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