Timeline


and

18-04-11:

12:32 Changeset [1773] by robert@…
Solved redirect bug in login controller
12:25 Changeset [1772] by robert@…
Refactored stylesheets to avoid duplicate code. See #411
12:21 Ticket #365 (date_created and last_undated) closed by work@…
fixed: this has already been resolved in the database upgrade script
12:12 Ticket #300 (Importing many (e.g. 187) subjects makes table editor unresponsive) closed by work@…
duplicate: duplicate of #416
12:06 Ticket #391 (In add/modify persons, the 'create' button is small, user will click ...) closed by work@…
wontfix: non issue, closing ticket…
11:29 Ticket #390 (cannot add subject species) closed by work@…
worksforme
11:28 Ticket #387 (Remove assayModule.platform field) closed by work@…
fixed
11:27 Changeset [1771] by robert@…
Fixed bug with stylesheet in template importer
11:19 Ticket #369 (Pressing enter in Assay step deletes assay) closed by work@…
fixed
11:07 Ticket #394 (change header for dedicated instances such as NMC DSP) closed by work@…
fixed

13-04-11:

16:43 Ticket #416 (GSCF becomes very slow with large studies) created by robert@…
With large number of samples (e.g. about 500 in …
16:36 Ticket #415 (Add possibility to add extra samples in study wizard) created by robert@…
Samples can only be added by creating subjects and adding sampling events. …
16:23 Ticket #375 (IE7 styling issues) closed by robert@…
fixed: Everything seems to be working again in 0.8.0. Maybe it had something to …
14:57 Changeset [1770] by robert@…
Improved logging in from modules
11:51 Changeset [1769] by robert@…
Added fields to study view and fixed strange values for parentEvent in …
11:11 Ticket #414 (SamplingEvent starttime is exported as seconds, not as human readable ...) created by robert@…
SamplingEvent? starttime is exported in the assay exporter as number of …
11:09 Ticket #386 (HTML Doctype is not used on CI or test.dbnp.org, but is in development ...) closed by robert@…
fixed: Seems to be working after configuration change.
11:04 Ticket #413 (Bugs when exporting assays) created by robert@…
Three bugs in exporting assays: - A javascript error occurs when logged in …

12-04-11:

16:46 Ticket #412 (If username is not filled in, and Register button is pressed, the Register ...) created by business@…
16:43 Ticket #411 (Refactor style sheets) created by robert@…
In r1739, new style sheets have been created for nmcdsp and dbnp. But a …
16:21 Changeset [1768] by robert@…
Solved small issues with study view
16:10 Changeset [1767] by s.h.sikkema@…
testing old jumpbar version 0.1.5
15:55 Changeset [1766] by s.h.sikkema@…
new jumpbar version 0.1.9
15:47 Changeset [1765] by work@…
- added anchor
15:36 Changeset [1764] by work@…
- created an info controller displaying application / plugin information …
15:34 Ticket #402 (gdtimporter: add 'ok' button in 'load match' dialog) closed by t.w.abma@…
fixed: Was solved this morning, works here.
15:16 Changeset [1763] by work@…
- added quickstart guides
15:04 Changeset [1762] by work@…
- apparently, the hostname on dbnp.org is nbx14 and not dbnp.org.…
14:36 Changeset [1761] by s.h.sikkema@…
assay excel export now writes to a temporary file first to prevent memory …
14:18 Ticket #410 (Exporting large excel files causes java.lang.OutOfMemoryError: Java heap ...) created by s.h.sikkema@…
If you try to export an assay with a lot of data, a …
14:05 Changeset [1760] by work@…
tagging 0.8.0 release
14:03 Changeset [1759] by work@…
- to 0.8.0
13:12 Changeset [1758] by work@…
- makes no sense showing a statistics box if there is nothing to show
13:07 Changeset [1757] by s.h.sikkema@…
fixed typo; updated jumpbar
12:43 Changeset [1756] by work@…
- makes no sense showing a statistics box if there is nothing to show
12:27 Changeset [1755] by work@…
- makes no sense showing a statistics box if there is nothing to show
12:14 Changeset [1754] by work@…
- removed default user from www config - trying to fix the homecontroller …
12:04 Changeset [1753] by work@…
homecontroller breaks if database is empty

11-04-11:

16:32 Ticket #409 (make metabolomics module more general) created by jildau.bouwman@…
Based on new peaklists (will be delivered by PIs) the metabolomics module …
16:16 Ticket #408 (find a way to facilitate sample name usage) created by jildau.bouwman@…
Currently the study create wizard automatically generates sample names. …
16:02 Changeset [1752] by robert@…
Updated assay export to be able to export multiple assays or studies (in …
16:01 Ticket #395 (beta importer doesn't recognize excel format) closed by t.w.abma@…
fixed: File was deleted too quick in the import wizard flow, is now deleted in …
15:53 Ticket #407 (add information (quetionmark) to assy step) created by jildau.bouwman@…
The name and module field in the assay step of the create study wizard do …
15:43 Ticket #406 (template names should be unique) created by jildau.bouwman@…
15:42 Ticket #405 ('responses' should define a proper content type) created by work@…
In a lot of places responses are being used, however most of them do not …
15:41 Ticket #404 (case insensitive ordering of template fields) created by jildau.bouwman@…
The template fields are now ordered: first capitals in alphabetical order …
15:34 Ticket #403 (TemplateEditor: the available fields should somehow show which ones are ...) created by work@…
If you want to add a template field which is set to 'required' to a …
15:30 Ticket #402 (gdtimporter: add 'ok' button in 'load match' dialog) created by work@…
When loading a stored 'match' configuration, you have to press the 'Load' …
15:25 Ticket #401 (study title should be unique) created by work@…
PI meeting feedback --> study title should be unique (note that this may …
15:18 Ticket #400 (Minimal number of contacts) created by t.w.abma@…
It should be obligatory to fill in at least one contact for a study.
15:01 Changeset [1751] by s.h.sikkema@…
new jumpbar (temp height fix)
14:06 Changeset [1750] by s.h.sikkema@…
new jumpbar version (0.1.6)
13:46 Ticket #399 (File import upload page, study should show code AND title) created by t.w.abma@…
File import upload page, study selector should show code AND title intead …
13:31 Changeset [1749] by t.w.abma@…
- upgraded gdtImporter to version 0.2.6
13:20 Ticket #396 (no notification if startdate is invalid) closed by jannekevdp@…
fixed
13:11 Changeset [1748] by work@…
- keydown instead of keypress
13:05 Changeset [1747] by t.w.abma@…
- reverting gdtImporter to version 0.2.4
13:00 Ticket #398 (unclearing group from sampling event still creates samples) created by jannekevdp@…
First, in study 10101 (test.nmcdsp.org) I created 2 groups. Subject 1-3 …
12:22 Ticket #397 (samples not updated correctly after change in group) created by jannekevdp@…
I created a new study in test.nmcdsp.org (study code is 30303), with 2 …
12:19 Changeset [1746] by t.w.abma@…
- reverting gdtImporter to version 0.2.3
12:16 Changeset [1745] by work@…
- resolves #396, disabled all key presses altogether in all fields that …
11:54 Changeset [1744] by work@…
- wizard 'studyPrevious' page did not handle 'quickSave'
11:49 Ticket #396 (no notification if startdate is invalid) created by jannekevdp@…
I created a new study in test.nmcdsp.org and filled in startDate as Code …
11:45 Changeset [1743] by work@…
- added plugin information for ci
11:27 Changeset [1742] by t.w.abma@…
- new gdtImporter 0.2.5 released / added in application.properties (file …
10:55 Changeset [1741] by work@…
- changed file upload definition logic
10:53 Changeset [1740] by work@…
- changed header image
10:46 Changeset [1739] by work@…
- added style definitions for nmcdsp.org and dbnp.org

08-04-11:

17:31 Ticket #395 (beta importer doesn't recognize excel format) created by jannekevdp@…
I try to import excel file in beta importer (ci.nmcdsp.org) As a preview …
17:24 Ticket #394 (change header for dedicated instances such as NMC DSP) created by business@…
Currently the header shows 'General Study Capture Framework', for specific …
17:17 Ticket #358 (simple wizard gives error when importing 'random' data) closed by jannekevdp@…
fixed: can't reproduce either
16:51 Ticket #384 (deleting contact person not possible) closed by jannekevdp@…
fixed
16:49 Changeset [1738] by work@…
fixed indentation
16:47 Ticket #383 (should have multiple deletion of subjects) closed by work@…
duplicate: duplicate to #309 and #310
16:43 Changeset [1737] by work@…
- gdt to 0.0.33, explicetly removing non-overlapping template fields upon …
16:03 Changeset [1736] by work@…
- resolves issue #384, studyPerson, publications and users are not deleted …
15:43 Changeset [1735] by work@…
- removed debug line
15:40 Changeset [1734] by work@…
- hudson tests fail because 'log' is not available... changed to println …
15:24 Changeset [1733] by work@…
- uncommented study save try/catch block
15:16 Ticket #367 (Subject - event group assignments disappear) closed by business@…
fixed: Tested with SVN HEAD and a tunnel to test.nmcdsp.org database, seems …
14:29 Ticket #393 (adding species term only possible once) closed by work@…
worksforme: Looking at the CI database as well as the species select, the Mus …
14:13 Changeset [1732] by work@…
- resolved an issue with identity (ticket #367)
14:08 Ticket #367 (Subject - event group assignments disappear) reopened by business@…
13:17 Changeset [1731] by robert@…
Bugfix with the order of samples in the assay exporter
12:07 Changeset [1730] by s.h.sikkema@…
Excel export uses getMeasurements rest call; made assay export visible for …
11:30 Changeset [1729] by robert@…
Fixed bug in simpletox exporter with exporting multiple studies.

07-04-11:

16:02 Changeset [1728] by s.h.sikkema@…
Changed max parameter from type int to Integer
15:57 Changeset [1727] by robert@…
Adjusted assayservice to make exporting assays work with the sequencing …
15:21 Changeset [1726] by t.w.abma@…
- added new gdtImporter version (0.2.4) to application.properties
15:18 Changeset [1725] by work@…
- gdt to 0.0.31
14:50 Changeset [1724] by s.h.sikkema@…
changed Study.give[Readable,Writable]Studies to make max parameter …
14:45 Changeset [1723] by work@…
- fixed failing assaytests
14:26 Ticket #235 (Retrieving publications from pubmed can't handle non-ascii characters) closed by work@…
fixed
14:25 Changeset [1722] by work@…
- fixed UTF-8 issues (issue #235 )
13:57 Changeset [1721] by work@…
- using new gdtimporter
13:35 Changeset [1720] by work@…
- upgraded ajaxflow, gdt and gdtimporter to fix issues with gdtimporter …
11:43 Ticket #192 (Add Datatype user-extendible String list (as in ontology)) closed by robert@…
fixed: I guess so too. The creation of database tables is handled by grails …
11:36 Ticket #392 (In the simple wizard, after choosing add/modify in one of the dropdowns, ...) closed by robert@…
fixed: Already fixed in trunk. Please wait for deployment
11:21 Ticket #243 (Application shows multiple languages mixed up) closed by work@…
fixed: Changed all Dutch i18n texts into English in r1719
11:21 Changeset [1719] by work@…
- changed Dutch texts into English.... #243
10:52 Changeset [1718] by work@…
commented out the try catch block to debug properly
10:39 Ticket #393 (adding species term only possible once) created by jannekevdp@…
In ci.nmcdsp.org I tried to add subject species (subject step in wizard, …

06-04-11:

17:24 Changeset [1717] by robert@…
Implemented searching for 'any field' in advanced query
16:40 Changeset [1716] by s.h.sikkema@…
new gdtImporter; new jumpbar; excel export to webflow; fixed spelling …
16:19 Ticket #331 (Preview of Excel workbook) closed by t.w.abma@…
fixed: Is implemented now. Instead of tabular preview, the user can choose the …
16:18 Ticket #360 (importer: first page should autodetect sheets after upload and ask the ...) closed by t.w.abma@…
fixed: Is implemented now, after uploading an Excel file the amount of sheets are …
15:55 Ticket #392 (In the simple wizard, after choosing add/modify in one of the dropdowns, ...) created by business@…
15:54 Ticket #391 (In add/modify persons, the 'create' button is small, user will click ...) created by business@…
In add/modify persons, a user is tempted to click 'close' instead of …
14:00 Ticket #249 (Make importer capable of updating records) closed by s.h.sikkema@…
fixed
13:21 Ticket #341 (Rewrite and clean up importer code) closed by t.w.abma@…
fixed: Importer Wizard has been rewritten/moved into a separate plugin called …
13:04 Ticket #385 (no excel file button) closed by t.w.abma@…
fixed: Fixed in GSCF, if environment check is "test" it uses a hidden fieldname, …
12:32 Ticket #390 (cannot add subject species) created by jannekevdp@…
While editing an existing study, I got the following error when trying to …
12:30 Changeset [1715] by work@…
- removed debug lines
12:00 Changeset [1714] by work@…
using getText instead
11:37 Changeset [1713] by work@…
debugging url on ci
11:36 Changeset [1712] by robert@…
Solved user registration bugs: changing password didn't work and lost …
11:30 Changeset [1711] by work@…
xml instead of html
11:26 Changeset [1710] by work@…
- response syntax was wrong?
11:22 Changeset [1709] by work@…
Automated continuous integration commit of minified JS/CSS
11:21 Changeset [1708] by work@…
- forcing UTF8 headers everywhere through the layouts
11:05 Changeset [1707] by work@…
Automated continuous integration commit of minified JS/CSS

05-04-11:

17:01 Changeset [1706] by work@…
- sometimes authentication bootstrap users are not available, flushing …
14:32 Changeset [1705] by robert@…
Renamed Metagenomics module to MassSequencing? module
12:09 Changeset [1704] by robert@…
Centering data in IE7
11:19 Ticket #363 (newly added field in a template are not directly shown) closed by work@…
worksforme: cannot reproduce, works fine for study, subjects, events, etc…
11:12 Changeset [1703] by work@…
- removed debug line
11:11 Changeset [1702] by work@…
resolves #369
10:08 Changeset [1701] by robert@…
Solved IE7 styling bug in search results

04-04-11:

15:22 Changeset [1700] by j.saito@…
Minor changes in documentation.
15:09 Changeset [1699] by j.saito@…
Removed empty folder/package that is no longer in use.
15:05 Changeset [1698] by j.saito@…
StudyXMLService and corresponding controller ready for hand over to …
14:12 Changeset [1697] by j.saito@…
Caused buidl errors.
14:05 Changeset [1696] by j.saito@…
Moved to StudyXMLService.
13:57 Changeset [1695] by j.saito@…
This is the new structure for importing / exporting studies from / to XML. …
13:32 Changeset [1694] by j.saito@…
Moved methods from service into controller.
13:00 Changeset [1693] by robert@…
Modules menu can be switched on or off in configuration
12:40 Changeset [1692] by robert@…
Microcommit to trigger ci build
12:15 Changeset [1691] by robert@…
GDT updated to 0.0.29
12:03 Changeset [1690] by robert@…
Added modules to the menu (#388)
11:54 Changeset [1689] by robert@…
Removed assayModule platform field (#387)
11:49 Ticket #389 (SimpleTox exporter doesn't work with samples without subject) created by robert@…
If samples are added to a study, without a parentSubject, exporting that …
11:00 Ticket #367 (Subject - event group assignments disappear) closed by business@…
fixed: Cannot reproduce anymore, closing.
10:54 Ticket #364 (delete events does not work) closed by business@…
fixed: Resolved.
10:46 Changeset [1688] by robert@…
Administrator mails are also sent to administrators on non-production …

01-04-11:

19:03 Changeset [1687] by business@…
added /query to assayService module REST call URLs to be more compliant …
11:06 Changeset [1686] by robert@…
Added 'open' button in simple wizard
10:34 Ticket #388 (Add links to modules in GSCF) created by robert@…
In GSCF, there are no links to the modules. Only using study -> show -> …
10:31 Changeset [1685] by robert@…
Save buttons in simple wizard

31-03-11:

17:06 Ticket #387 (Remove assayModule.platform field) created by robert@…
As it is not really used
17:03 Changeset [1684] by robert@…
improvements in simple wizard

30-03-11:

11:11 Ticket #386 (HTML Doctype is not used on CI or test.dbnp.org, but is in development ...) created by robert@…
The HTML doctype that is present in layouts/main.gsp: <!DOCTYPE html …
09:53 Ticket #385 (no excel file button) created by jannekevdp@…
To import subject data I wanted to import an Excel file. But no button was …
09:28 Ticket #382 (Cannot exclude sample template in simple wizard) closed by robert@…
wontfix: This is intentional: the simple wizard is meant for studies that are very …

29-03-11:

15:51 Ticket #384 (deleting contact person not possible) created by jannekevdp@…
In the study wizard I added two contact persons, quick saved. But then now …
15:34 Ticket #383 (should have multiple deletion of subjects) created by jannekevdp@…
In my study there is a double set of subjects, but multiple deletion after …
15:25 Ticket #382 (Cannot exclude sample template in simple wizard) created by jannekevdp@…
I edit my new created study and add some more fields, then click next and …
15:22 Changeset [1683] by robert@…
Small improvements in simple wizard
15:22 Changeset [1682] by robert@…
Fix for IE7 bug in querying
15:16 Ticket #381 (table editor scrollbar should also be on top) created by robert@…
When the table editor contains many rows (e.g. subjects page of …
15:09 Changeset [1681] by robert@…
Why doesn't CI redeploy?
15:06 Changeset [1680] by robert@…
Solving problems with HTML tags around plain text output
15:00 Changeset [1679] by robert@…
Test commit to solve publicationchooser problems
14:30 Changeset [1678] by robert@…
Added entity names above table editor in simple wizard and added template …

28-03-11:

14:41 Ticket #380 (Signout and profile links disappear) created by tjeerd@…
When you are in the "edit study" wizard and you click the "Profile" o r …
12:55 Ticket #368 (delete assay in SAM gives Grails error) closed by business@…
wontfix: Please report SAM issues in the SAM bugtracker:  https://trac.nbic.nl/ccm.
12:35 Changeset [1677] by robert@…
Small fix for simple wizard importer
11:30 Ticket #379 (Importer doesn't sort studies) closed by t.w.abma@…
fixed: Solved in revision [1676]. Now displays [no code] when study code is null …
11:30 Changeset [1676] by t.w.abma@…
- first page in importer wizard, study shows [no code] when study contains …
11:14 Ticket #379 (Importer doesn't sort studies) created by s.h.sikkema@…
The study select box is not sorted by code. Also, 'null' can appear if the …
10:58 Changeset [1675] by t.w.abma@…
- changed check for environment on fileimport page; when not …
10:55 Ticket #378 (Show template description when choosing template) created by robert@…
Each template has a description that gives the user more information about …

25-03-11:

18:21 Changeset [1674] by business@…
small correction

24-03-11:

11:06 Ticket #377 (Mail registration templates are not working properly) created by work@…
The user registrataion it trying to send HTML e-mail, however the HTML is …
10:10 Changeset [1673] by robert@…
Added default mail sender to the configuration (#342) and improved proxy …

23-03-11:

14:48 QuickStartServer edited by work@…
(diff)
14:36 Changeset [1672] by work@…
tagging 0.7.0
14:27 Changeset [1671] by work@…
- removed debug lines
14:17 Changeset [1670] by work@…
to 0.7.0
14:13 Ticket #335 (create webtests for importer) closed by work@…
fixed
14:04 Ticket #339 (improve home page) closed by work@…
fixed
13:55 Ticket #347 (importer wizard does not check for duplicate identifiers) closed by s.h.sikkema@…
fixed
13:54 Ticket #159 (Excel exporter) closed by s.h.sikkema@…
fixed
13:51 Ticket #342 (emails can't be sent from test.dbnp.org) reopened by robert@…
Not fixed yet, and can be fixed now.
13:49 Ticket #371 (Events timeline has gone in last version) closed by work@…
fixed
13:48 Ticket #376 (public checkbox do not work) closed by work@…
fixed
13:32 Changeset [1669] by work@…
no more gmails
13:28 Changeset [1668] by robert@…
Small bugfix
13:11 Changeset [1667] by work@…
- tried to resolve #342 but cannot fix the issue due to the mail plugin …
13:10 Ticket #342 (emails can't be sent from test.dbnp.org) closed by work@…
wontfix: cannot fix at this stage, the issue is two fold: 1. on dbnp.org we …
12:19 Changeset [1666] by work@…
- a bit more spacing
12:16 Ticket #361 (importer: setting a non existant value in a Stringlist does not result in ...) closed by t.w.abma@…
fixed: Solved in [215], now contains the invalid value as an option in the …
11:38 Changeset [1665] by work@…
- resolves #376
11:25 Changeset [1664] by work@…
- gdt to 0.0.28, resolves #361
11:22 Changeset [1663] by work@…
- typo
11:06 Changeset [1662] by work@…
- changed lorem ipsum into introductionary text

22-03-11:

23:16 Changeset [1661] by work@…
- partly reverted the previous change (else instead of else if)
23:15 Changeset [1660] by work@…
- removed obsolete test cases
17:45 Changeset [1659] by s.h.sikkema@…
Measurements are selected by default in assay excel exporter
16:33 Changeset [1658] by t.w.abma@…
- importer wizard webtest working - native file input HTML element didn't …
15:16 Ticket #372 (Error when adding a field to a template on CI) closed by robert@…
fixed: Seems to be solved now. Closing the ticket
14:03 Changeset [1657] by work@…
- resolved issue #372
13:17 Ticket #376 (public checkbox do not work) created by jildau.bouwman@…
If a study is made public via the checkbox, you are unable to close this …
09:56 Changeset [1656] by t.w.abma@…
- added 'hack' to fix the file upload via Ajax by stripping HTML from the …
09:27 Ticket #375 (IE7 styling issues) created by robert@…
GSCF looks quite bad in IE7. See attached screenshot: - everything is …

21-03-11:

15:04 Changeset [1655] by work@…
make sure all json methods also set a proper json header
13:41 Ticket #374 (GSCF 0.7.0 test war release: Homepage has Error 500: Executing action ...) created by tsteemers@…
On two different installs, following the QuickstartServer? document up to …
13:39 Ticket #373 (Jumbar iFrame too small in webkit browsers from ci/test) created by s.h.sikkema@…
When viewing an assay in a module (metabolomics) on CI or TEST.dbnp.org on …
11:22 Ticket #372 (Error when adding a field to a template on CI) created by robert@…
I tried to add a template field to a template. This resulted in the …
11:17 Ticket #359 (Error when deploying GSCF 0.6.6 test WAR release) closed by work@…
fixed
11:11 Ticket #339 (improve home page) reopened by business@…
The 'lorem ipsum' should be replaced (professional look). Jildau, any …
10:38 Ticket #340 (Repair fulltext search) closed by work@…
wontfix: removed searchable, simpleQuery, etcetera
10:35 Ticket #337 (admin interface for managing modules) closed by work@…
wontfix
10:34 Changeset [1654] by robert@…
Fixed a bug in uploading files. The bug appeared in the simple wizard, but …
10:22 Ticket #366 (importer does not import all colomns and rows) closed by work@…
invalid: bug report does not contain description of actual bug... closing…
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