Timeline


and

29-03-11:

15:51 Ticket #384 (deleting contact person not possible) created by jannekevdp@…
In the study wizard I added two contact persons, quick saved. But then now …
15:34 Ticket #383 (should have multiple deletion of subjects) created by jannekevdp@…
In my study there is a double set of subjects, but multiple deletion after …
15:25 Ticket #382 (Cannot exclude sample template in simple wizard) created by jannekevdp@…
I edit my new created study and add some more fields, then click next and …
15:22 Changeset [1683] by robert@…
Small improvements in simple wizard
15:22 Changeset [1682] by robert@…
Fix for IE7 bug in querying
15:16 Ticket #381 (table editor scrollbar should also be on top) created by robert@…
When the table editor contains many rows (e.g. subjects page of …
15:09 Changeset [1681] by robert@…
Why doesn't CI redeploy?
15:06 Changeset [1680] by robert@…
Solving problems with HTML tags around plain text output
15:00 Changeset [1679] by robert@…
Test commit to solve publicationchooser problems
14:30 Changeset [1678] by robert@…
Added entity names above table editor in simple wizard and added template …

28-03-11:

14:41 Ticket #380 (Signout and profile links disappear) created by tjeerd@…
When you are in the "edit study" wizard and you click the "Profile" o r …
12:55 Ticket #368 (delete assay in SAM gives Grails error) closed by business@…
wontfix: Please report SAM issues in the SAM bugtracker:  https://trac.nbic.nl/ccm.
12:35 Changeset [1677] by robert@…
Small fix for simple wizard importer
11:30 Ticket #379 (Importer doesn't sort studies) closed by t.w.abma@…
fixed: Solved in revision [1676]. Now displays [no code] when study code is null …
11:30 Changeset [1676] by t.w.abma@…
- first page in importer wizard, study shows [no code] when study contains …
11:14 Ticket #379 (Importer doesn't sort studies) created by s.h.sikkema@…
The study select box is not sorted by code. Also, 'null' can appear if the …
10:58 Changeset [1675] by t.w.abma@…
- changed check for environment on fileimport page; when not …
10:55 Ticket #378 (Show template description when choosing template) created by robert@…
Each template has a description that gives the user more information about …

25-03-11:

18:21 Changeset [1674] by business@…
small correction

24-03-11:

11:06 Ticket #377 (Mail registration templates are not working properly) created by work@…
The user registrataion it trying to send HTML e-mail, however the HTML is …
10:10 Changeset [1673] by robert@…
Added default mail sender to the configuration (#342) and improved proxy …

23-03-11:

14:48 QuickStartServer edited by work@…
(diff)
14:36 Changeset [1672] by work@…
tagging 0.7.0
14:27 Changeset [1671] by work@…
- removed debug lines
14:17 Changeset [1670] by work@…
to 0.7.0
14:13 Ticket #335 (create webtests for importer) closed by work@…
fixed
14:04 Ticket #339 (improve home page) closed by work@…
fixed
13:55 Ticket #347 (importer wizard does not check for duplicate identifiers) closed by s.h.sikkema@…
fixed
13:54 Ticket #159 (Excel exporter) closed by s.h.sikkema@…
fixed
13:51 Ticket #342 (emails can't be sent from test.dbnp.org) reopened by robert@…
Not fixed yet, and can be fixed now.
13:49 Ticket #371 (Events timeline has gone in last version) closed by work@…
fixed
13:48 Ticket #376 (public checkbox do not work) closed by work@…
fixed
13:32 Changeset [1669] by work@…
no more gmails
13:28 Changeset [1668] by robert@…
Small bugfix
13:11 Changeset [1667] by work@…
- tried to resolve #342 but cannot fix the issue due to the mail plugin …
13:10 Ticket #342 (emails can't be sent from test.dbnp.org) closed by work@…
wontfix: cannot fix at this stage, the issue is two fold: 1. on dbnp.org we …
12:19 Changeset [1666] by work@…
- a bit more spacing
12:16 Ticket #361 (importer: setting a non existant value in a Stringlist does not result in ...) closed by t.w.abma@…
fixed: Solved in [215], now contains the invalid value as an option in the …
11:38 Changeset [1665] by work@…
- resolves #376
11:25 Changeset [1664] by work@…
- gdt to 0.0.28, resolves #361
11:22 Changeset [1663] by work@…
- typo
11:06 Changeset [1662] by work@…
- changed lorem ipsum into introductionary text

22-03-11:

23:16 Changeset [1661] by work@…
- partly reverted the previous change (else instead of else if)
23:15 Changeset [1660] by work@…
- removed obsolete test cases
17:45 Changeset [1659] by s.h.sikkema@…
Measurements are selected by default in assay excel exporter
16:33 Changeset [1658] by t.w.abma@…
- importer wizard webtest working - native file input HTML element didn't …
15:16 Ticket #372 (Error when adding a field to a template on CI) closed by robert@…
fixed: Seems to be solved now. Closing the ticket
14:03 Changeset [1657] by work@…
- resolved issue #372
13:17 Ticket #376 (public checkbox do not work) created by jildau.bouwman@…
If a study is made public via the checkbox, you are unable to close this …
09:56 Changeset [1656] by t.w.abma@…
- added 'hack' to fix the file upload via Ajax by stripping HTML from the …
09:27 Ticket #375 (IE7 styling issues) created by robert@…
GSCF looks quite bad in IE7. See attached screenshot: - everything is …

21-03-11:

15:04 Changeset [1655] by work@…
make sure all json methods also set a proper json header
13:41 Ticket #374 (GSCF 0.7.0 test war release: Homepage has Error 500: Executing action ...) created by tsteemers@…
On two different installs, following the QuickstartServer? document up to …
13:39 Ticket #373 (Jumbar iFrame too small in webkit browsers from ci/test) created by s.h.sikkema@…
When viewing an assay in a module (metabolomics) on CI or TEST.dbnp.org on …
11:22 Ticket #372 (Error when adding a field to a template on CI) created by robert@…
I tried to add a template field to a template. This resulted in the …
11:17 Ticket #359 (Error when deploying GSCF 0.6.6 test WAR release) closed by work@…
fixed
11:11 Ticket #339 (improve home page) reopened by business@…
The 'lorem ipsum' should be replaced (professional look). Jildau, any …
10:38 Ticket #340 (Repair fulltext search) closed by work@…
wontfix: removed searchable, simpleQuery, etcetera
10:35 Ticket #337 (admin interface for managing modules) closed by work@…
wontfix
10:34 Changeset [1654] by robert@…
Fixed a bug in uploading files. The bug appeared in the simple wizard, but …
10:22 Ticket #366 (importer does not import all colomns and rows) closed by work@…
invalid: bug report does not contain description of actual bug... closing…

18-03-11:

16:06 Changeset [1653] by work@…
- config file stuff into it's page logic
15:55 Changeset [1652] by work@…
- gone with searchable
15:32 Changeset [1651] by work@…
- removed searchable - worked on the initial version of the setup wizard
15:12 QuickStartServer edited by s.h.sikkema@…
(diff)
14:29 WikiStart edited by business@…
(diff)
14:29 WikiStart edited by business@…
(diff)
14:10 Changeset [1650] by work@…
- fixed an issue where subject data was not saved within a refresh
13:29 Changeset [1649] by work@…
query -> search
13:24 Changeset [1648] by work@…
- advanced query page only shows previous query links if there are any - …
12:37 Changeset [1647] by work@…
- changed admin topnav
12:13 Changeset [1646] by work@…
- removed obsolete SimpleQuery? - removed obsolete Query - changed 'Query' …
11:34 Changeset [1645] by work@…
- test commit reponse header in gsp
10:09 Ticket #371 (Events timeline has gone in last version) created by business@…
In the study overview, the events timeline is suddenly gone... Any idea …

17-03-11:

21:01 Changeset [1644] by work@…
- test
17:42 Changeset [1643] by work@…
updated gscf instructions
17:34 QuickStartServer edited by work@…
(diff)
17:32 QuickStartServer edited by work@…
(diff)
17:23 QuickStartServer edited by work@…
(diff)
17:22 QuickStartServer edited by work@…
(diff)
15:58 Changeset [1642] by work@…
- templateEditor now scrolls down and focusses on the name field when …
15:18 Changeset [1641] by work@…
- gdt up to 0.0.26 (varchar 255 bugfix)
15:16 Changeset [1640] by work@…
- added simple study support (study page)
13:22 Ticket #352 (Importer creates 12 entities when importing 11) closed by t.w.abma@…
fixed: Fixed in the gdtImporter, next release of GSCF should probably use the …
12:31 QuickStartServer edited by tsteemers@…
(diff)
12:02 Changeset [1639] by work@…
- changed 0.6.6.1 into 0.6.7 as the deploy script does not expect a 4 …
12:00 Ticket #332 (Store invalid values (Ontology, Stringlist, Date) in wizardError variable) closed by t.w.abma@…
fixed: Is solved by returning an errorList when using the …
11:56 Ticket #370 (add multiple navigation slides and column headers) created by jannekevdp@…
To increase usability of wizard it would be nice to - put the navigation …
11:33 Ticket #369 (Pressing enter in Assay step deletes assay) created by jannekevdp@…
If I define one assay, and create new assay template, wizard asks for a …
10:40 Ticket #368 (delete assay in SAM gives Grails error) created by jildau.bouwman@…
delete assay in SAM gives Grails error

16-03-11:

18:05 Ticket #367 (Subject - event group assignments disappear) reopened by work@…
might have been related to #364, please retest…
18:03 Changeset [1638] by work@…
- resolves #364
16:33 Ticket #367 (Subject - event group assignments disappear) closed by business@…
invalid: Hmm can't reproduce this problem myself now anymore. So closing the …
16:23 Ticket #367 (Subject - event group assignments disappear) created by business@…
On test.dbnp.org, if I follow these steps: 1. login as 'user' 2. go to …
13:58 Ticket #304 (GSCF Hudson integration tests fail) closed by s.h.sikkema@…
fixed
13:17 QuickStartServer edited by work@…
(diff)
13:16 QuickStartServer edited by work@…
(diff)
13:06 QuickStartServer edited by work@…
(diff)
13:05 QuickStartServer edited by work@…
(diff)
12:52 QuickStartServer edited by work@…
(diff)
12:49 QuickStartServer edited by work@…
(diff)
12:44 QuickStartServer edited by work@…
(diff)
12:41 QuickStartServer edited by work@…
(diff)
12:41 QuickStartServer created by work@…
11:41 QuickStart edited by work@…
(diff)
11:37 Changeset [1637] by work@…
- up to 0.6.6.1 (see #359)

15-03-11:

17:21 Ticket #366 (importer does not import all colomns and rows) created by jildau.bouwman@…
importer does not import all colomns and rows.
17:15 Ticket #365 (date_created and last_undated) created by jildau.bouwman@…
If fields are added to a template an error occurs. Database was updated …
17:11 Ticket #364 (delete events does not work) created by jildau.bouwman@…
An event cannot be deleted if it is the last of it's 'kind'. For instance …
17:01 Ticket #363 (newly added field in a template are not directly shown) created by jildau.bouwman@…
If a new field is added to a template, it is not shown directly. First the …
16:59 Ticket #362 (add new ontology as template field) created by jildau.bouwman@…
-the field appears very low in the popup window. -if I search for the …
16:42 Changeset [1636] by work@…
- gdt to 0.0.25: - template editor blue screen is fixed - 0 values are …
15:01 Ticket #361 (importer: setting a non existant value in a Stringlist does not result in ...) created by work@…
When importing an excel sheet into a template field which is a Stringlist, …
14:06 Changeset [1635] by work@…
- added checks to Grom calls if Grom is available so we can uninstall the …
12:10 Changeset [1634] by work@…
- event templates were not refreshed properly after update (ticket to come …
11:55 Ticket #360 (importer: first page should autodetect sheets after upload and ask the ...) created by work@…
Currently, the question is always asked which sheet you would like to …

14-03-11:

18:31 Ticket #359 (Error when deploying GSCF 0.6.6 test WAR release) created by tsteemers@…
After deploying the GSCF 0.6.6 test WAR release in a fresh Tomcat 5.5 and …
16:36 Changeset [1633] by s.h.sikkema@…
Fixed 'Assay has no value (null)' error in assay exporter
15:49 Changeset [1632] by s.h.sikkema@…
Fixed 'Assay has no value (null)' error in assay exporter
14:55 Changeset [1631] by s.h.sikkema@…
Fixed 'Assay has no value (null)' error in assay exporter
12:34 Ticket #358 (simple wizard gives error when importing 'random' data) created by business@…
By using the file subjecttest.xls and choosing 'Edit data after importing' …
12:22 Ticket #357 (Implement Galaxy fetch functionality in GSCF) created by business@…
Implement a Galaxy plugin that fetches GSCF information via the steps in …
11:34 Ticket #356 (Add extra options for ONTOLOGY template fields to template field ...) created by business@…
Right now, it's not possible to choose a value for an ONTOLOGY field that …

11-03-11:

15:33 Changeset [1630] by work@…
- disabled gmail for dbnp servers
15:25 Changeset [1629] by work@…
tagging 0.6.6 release
15:06 Changeset [1628] by work@…
- removed obosolete setup wizard - 0.6.6 milestone
14:56 Ticket #351 (advanced query breaks on number of occasions) closed by work@…
fixed
14:28 Ticket #355 (Create usergroups) created by robert@…
In order to give groups of users read or write access to a study. Now, if …
14:19 Ticket #354 (Counting studies is sometimes incorrect) closed by work@…
fixed
14:14 Changeset [1627] by work@…
- deny all access to /query except in development
13:42 Changeset [1626] by work@…
- added initial support of a return URI; not working properly though…
13:38 Ticket #346 (improve fuzzy matching) closed by t.w.abma@…
fixed: Solved, tested with a more strict fuzzy matching setting. Now only matches …
12:55 Changeset [1625] by work@…
- improved quicksearch
12:47 Ticket #339 (improve home page) closed by work@…
fixed
12:43 Changeset [1624] by work@…
- reverted addition of unique() in 1621 as this doubles with the …
12:40 Changeset [1623] by work@…
- resolves #354
11:51 Changeset [1622] by robert@…
Small fix in simple wizard overview
11:49 Ticket #354 (Counting studies is sometimes incorrect) created by robert@…
The nice graph on the home screen counts the number of studies. But this …
11:02 Changeset [1621] by robert@…
Fixed some bugs in simple wizard and study view page

10-03-11:

16:06 Changeset [1620] by work@…
- gdt to 0.0.23
16:03 Ticket #323 (Change bluescreen error message into a human readable and professional one) closed by work@…
fixed
15:53 Changeset [1619] by work@…
spinner
13:34 Changeset [1618] by robert@…
Solved issue #351
13:26 Ticket #345 (Cloning templates has stopped working) closed by robert@…
fixed: Seems to be working again.
13:06 Changeset [1617] by robert@…
Bugfix in advanced query
12:29 Changeset [1616] by work@…
- commiting a hibernate performance tweak, all still seems to work?
11:33 Changeset [1615] by work@…
- fixed cloning of templates (gscf issue #345)
11:02 Changeset [1614] by work@…
- fixed indentation
09:58 Ticket #350 (project is broken!) closed by work@…
fixed
09:55 Changeset [1613] by robert@…
Removed some printlns
09:54 Changeset [1612] by robert@…
Update simple wizard to import subject without a name correctly and import …

09-03-11:

22:24 Changeset [1611] by robert@…
Improved simple study wizard
21:28 Changeset [1610] by robert@…
Improved simple import wizard to be able to import events
17:28 Changeset [1609] by robert@…
Improved simple editing wizard
16:31 Ticket #353 (Subject species shouldn't be required) created by robert@…
Sometimes sequencing studies are done using product samples or air …
15:56 Changeset [1608] by robert@…
Fixed bug with hibernate and transactional services in the simple wizard
14:57 Ticket #352 (Importer creates 12 entities when importing 11) created by jannekevdp@…
I just uploaded subjecttest.xls (which has 11 rows) and assigned the right …
11:21 Ticket #351 (advanced query breaks on number of occasions) created by work@…
When I was yesterday demo-ing the query page on test.nmcdsp.org, the page …
10:17 Changeset [1607] by work@…
- gdt to 0.0.21, fixed a js issue in the term editor

08-03-11:

19:04 Changeset [1606] by s.h.sikkema@…
added import …
18:30 Ticket #350 (project is broken!) created by work@…
See < http://hudson.nmcdsp.org/hudson/job/GSCF-TEST-DOC/208/changes> …
18:04 Changeset [1605] by s.h.sikkema@…
commit for Robert: see if webflow works when all logic is moved to …
18:01 Changeset [1604] by s.h.sikkema@…
Added two flushes so that gscf starts correctly on an empty PostgresQL …
17:18 Ticket #349 (extend GDT with dynamic addToXXX method for template entities) created by work@…
Now we have to do study.addToSamples(...) It would be nicer if …
17:10 Changeset [1603] by work@…
- importer wizard for studies is instantiating a study from the hidden …
16:08 Changeset [1602] by work@…
- improved database upgrade script
16:02 Changeset [1601] by robert@…
14:16 Changeset [1600] by work@…
added some debugging lines
14:06 Changeset [1599] by work@…
to e or not to e
14:00 Changeset [1598] by work@…
and false!
13:59 Changeset [1597] by work@…
uncommented try/catch block
11:20 Ticket #344 (Search form retrieves data from modules using GET) closed by robert@…
fixed: This issue is solved in r1596
11:20 Changeset [1596] by robert@…
Solved #344 - retrieving module data is now done using POST
09:51 Ticket #348 (move gdtimporter plugin to a trunk directory) closed by t.w.abma@…
fixed: Moved.

07-03-11:

18:33 Ticket #329 (Finishing touch after tokens have been refactored) closed by work@…
fixed: The upgrade method looks good, however it now tries to alter the table …
18:31 Changeset [1595] by work@…
- some database upgrade scripts were always being executed, introduced …
15:28 Changeset [1594] by robert@…
Finishing touch after refactoring entity tokens (#329)
15:02 Changeset [1593] by s.h.sikkema@…
de-commented: def beforeInterceptor = …
14:23 Changeset [1592] by work@…
- fb only on prod
12:15 Ticket #348 (move gdtimporter plugin to a trunk directory) created by business@…
12:03 Ticket #347 (importer wizard does not check for duplicate identifiers) created by business@…
When I import subjects with 'Linea subject' template on ci.nmcdsp.org and …
12:01 Changeset [1591] by robert@…
Improved simple wizard so that is can edit studies
11:59 Ticket #346 (improve fuzzy matching) created by business@…
Right now, 'Match' in the importer tries to match even if the match is …
11:36 Ticket #296 (Nice to have: on duplicate identifiers, generate a unique identifier name ...) closed by business@…
duplicate: Duplicate of #249
11:28 Ticket #343 (Redirect for metabolomics module does not work) closed by business@…
fixed: This is intentional. Metabolomics studies can be shown by querying on …
11:22 Ticket #313 (rewrite tests - import test data explicitly) closed by business@…
fixed: Because bootstrapping at the beginning of each test slows down total …
10:29 Ticket #336 (make sure all tests succeed) closed by business@…
fixed

04-03-11:

16:28 Changeset [1590] by work@…
- fixing remaining test issues
12:34 Changeset [1589] by s.h.sikkema@…
Deleted 'cd..' which somehow got in there
12:30 Changeset [1588] by s.h.sikkema@…
Fixed tests (except webtests); cleaned up …
12:14 Changeset [1587] by s.h.sikkema@…
10:08 Changeset [1586] by work@…
minor css change

03-03-11:

20:24 Changeset [1585] by work@…
moved text search method into Study domain
20:02 Changeset [1584] by work@…
- did some more restyling of the home page (ticket #339) - statistics …

02-03-11:

17:40 Changeset [1583] by s.h.sikkema@…
UI improvements to assay exporter (ticket #159)
17:38 Changeset [1582] by work@…
removed the AssayTagLib? by request of Siemen
10:40 Changeset [1581] by work@…
set keyword expansion
10:38 Changeset [1580] by work@…
removed keyword expansion for artifact templates

01-03-11:

11:34 Ticket #345 (Cloning templates has stopped working) created by robert@…
Cloning a template from the template editor raises an error. It seems to …
11:25 Changeset [1579] by robert@…
Using params.moduleURL instead of params.consumer for checking the assay …

28-02-11:

18:47 Changeset [1578] by work@…
- made a smaller header (60px instead of 120px)
18:04 Changeset [1577] by robert@…
Resolved problems with module communication
17:56 Ticket #344 (Search form retrieves data from modules using GET) created by robert@…
But the URL will get very long with many samples/studies. This should be …
17:44 Changeset [1576] by robert@…
- Solved locking problems with module communication - Fixed a null pointer …
17:39 Ticket #343 (Redirect for metabolomics module does not work) created by business@…
For  http://ci.sam.nmcdsp.org, the metabolomics redirect works correctly. …
17:25 Changeset [1575] by work@…
- resolves #339 menu issues
13:52 Ticket #342 (emails can't be sent from test.dbnp.org) created by robert@…
When registering as a new user on test.dbnp.org, a message appears 'mail …
12:32 Grails Plugins created by business@…
12:15 Ticket #334 (groovy.lang.MissingMethodException in AssayController) closed by business@…
fixed: Solved by correcting the database, which had an invalid record in the …
12:13 Changeset [1574] by work@…
- updated mapping name column constraint database upgrade function to be …
12:07 Changeset [1573] by robert@…
Check for null values in study.assays list
11:48 Changeset [1572] by work@…
- gdt updated to 0.0.18
11:32 Ticket #159 (Excel exporter) reopened by business@…
A few changes: * add info the steps: * Select the assay you want to …
11:23 Ticket #341 (Rewrite and clean up importer code) created by business@…
11:10 Ticket #340 (Repair fulltext search) created by business@…
repair /simpleQuery and re-add it to the menu
11:05 Ticket #339 (improve home page) created by business@…
The home page has to be improved: first phase: * customize layout per …
10:57 Ticket #338 (improve contacts page) created by business@…
Add a 'studies' column to the Contacts page to be able to click through …
10:54 Ticket #337 (admin interface for managing modules) created by business@…
Improve /assayModule: * explain notify * check whether module is actually …
10:49 Ticket #225 (Rewrite #2 : rewrite template model (+template editor + tags) into a ...) closed by work@…
fixed: closing this ticket as GDT is becoming pretty mature…
10:47 Ticket #336 (make sure all tests succeed) created by business@…
fixed as of build 195 -  http://hudson.nmcdsp.org/job/GSCF-TEST-DOC/195/
10:47 Ticket #335 (create webtests for importer) created by business@…
10:38 Ticket #308 (select-boxes in a 'grid' don't work properly in IE7) closed by work@…
fixed
10:36 Ticket #260 (in Safari the publication and people buttons are not styled properly ...) closed by work@…
fixed: fixed, closing issue
08:57 Ticket #305 (Validation in import wizard still fails in some cases) closed by business@…
fixed
08:40 Ticket #316 (Template importer stopped working) closed by business@…
fixed
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