Timeline


and

Jan 25, 2011:

5:57 PM Changeset [1440] by robert@…
Made the studytoken, assaytoken and sampletoken stable identifiers, as …
4:39 PM Changeset [1439] by work@…
- move templateEditor into gdt plugin - refactored templateEditor - …
11:21 AM Changeset [1438] by work@…
- gdt to 0.0.2
11:15 AM Changeset [1437] by work@…
- removed jars as they are moved into the gdt plugin

Jan 24, 2011:

3:48 PM Changeset [1436] by robert@…
Improved querying, fixed some tests and added imports of the GDT plugin
3:32 PM Ticket #285 (Importer stops working after first step) created by business@…
The importer seems to have completely died after the refactorings and …
12:12 PM Changeset [1435] by work@…
- moved configuration back to grails-app/conf
11:50 AM Changeset [1434] by work@…
- no facebook like in development :)

Jan 22, 2011:

5:02 PM Changeset [1433] by work@…
-fixed duplicate class 'RestControllerTests?' -fixed imports for other …
4:07 PM Changeset [1432] by robert@…
Made querying aware of the templates being moved to a plugin. Also …

Jan 21, 2011:

9:31 PM Changeset [1431] by work@…
- fixed the facebook like button
9:05 PM Changeset [1430] by work@…
- set keyword expansion
8:56 PM Changeset [1429] by work@…
- removed libraries which did not seem to be used at all, to cleanup …
8:35 PM Changeset [1428] by work@…
ajaxflow up to 0.1.19 (css fix for webkit browsers)
8:25 PM Ticket #280 (Non-active tab buttons don't display correctly in Webkit browsers) closed by work@…
fixed
8:23 PM Changeset [1427] by work@…
resolved issue #280
7:37 PM Changeset [1426] by work@…
- Resolved part of improvement #225 - refactored the template model …
4:37 PM Changeset [1425] by s.h.sikkema@…
Rudimentary assay export functionality
4:30 PM Changeset [1424] by robert@…
Improved querying and created a possibility to search for assays
1:29 PM Changeset [1423] by work@…
ajaxflow to 0.1.18 (id support)

Jan 20, 2011:

6:32 PM Changeset [1422] by work@…
- fixed importer issue with the authentication service not being …
6:13 PM Changeset [1421] by work@…
- fixed importer issue with the authentication service not being …
5:56 PM Ticket #284 (In importer step 3, the column headers are rendered in a strange way ...) created by business@…
In step 3 - Mappings - of the importer wizard, if you have invalid …
5:41 PM Changeset [1420] by work@…
- and up to 0.6.4
4:28 PM Changeset [1419] by work@…
- importer title fixed - indentation fixed - all fixed time for drinks
4:17 PM Changeset [1418] by work@…
- enabled authentication in importer
4:10 PM Changeset [1417] by work@…
- did some extreme programming with Tjeerd to fix issues in the …
3:42 PM Ticket #279 (Metabolomics module forward login is framed) closed by m.s.vanvliet@…
fixed: Was a wrong configuration in the database. It was pointing to a wrong …
3:41 PM Ticket #209 (Label / reference of the study in wizard pages) closed by m.s.vanvliet@…
fixed
11:25 AM Ticket #258 (Module opens in very small frame) reopened by robert@…
Even though I had thought it would be ok, I keep seeing the frame as a …

Jan 19, 2011:

4:01 PM Changeset [1416] by t.w.abma@…
- again fixed the importer, persisting seemed to work fine, but …
2:17 PM Ticket #283 (Study overview shows only 10 studies) created by robert@…
On CI, many studies are present (more than 10). When logged in as …

Jan 18, 2011:

8:41 PM Changeset [1415] by robert@…
First version of advanced querying
4:38 PM Changeset [1414] by work@…
- moved the environment specific properties files to src/java to make …
4:22 PM Ticket #282 (fileFieldElement stores uploaded files in wide-open directory) created by work@…
The fileFieldElement allows ajax-upload of a file, but stores the …
4:07 PM Changeset [1413] by work@…
- removed 'tab' logic from importercontroller
3:59 PM Changeset [1412] by work@…
- ajaxflow up to 0.1.17
3:51 PM Changeset [1411] by t.w.abma@…
- cleaned up importer service and controller (and removed flow …
3:51 PM Changeset [1410] by work@…
- no clickable tabs
3:49 PM Changeset [1409] by work@…
- no clickable tabs
3:38 PM Changeset [1408] by work@…
- refactored grom plugin to be less procedural
2:45 PM Ticket #281 (Internationalization - make sure everything is in English) created by business@…
If gscf is viewed in a Dutch browser, some messages are in Dutch - …
1:43 PM Changeset [1407] by work@…
- fixes an issue with database upgrade script
1:12 PM Changeset [1406] by work@…
- test fix for database upgrade script
11:09 AM Changeset [1405] by business@…
trigger ci
10:52 AM Changeset [1404] by business@…
small fix
10:46 AM Changeset [1403] by business@…
fix recurring issue with TEXT fields

Jan 17, 2011:

2:38 PM Ticket #280 (Non-active tab buttons don't display correctly in Webkit browsers) created by s.h.sikkema@…
In chrome and safari the non-active tab buttons don't display …

Jan 14, 2011:

10:47 AM Changeset [1402] by t.w.abma@…
- minor fix in saveDatamatrix method in ImporterService?, by adding …
8:59 AM Ticket #279 (Metabolomics module forward login is framed) created by m.s.vanvliet@…
When you login to the GSCF and click on a Metabolomics assay you …
8:36 AM Ticket #278 (Allow alternative data/time formatting during import) created by e.vansomeren@…
When importing date/time information, imported values may not always …
8:08 AM Ticket #277 (Simpel Query does not work) created by e.vansomeren@…
Currently, the simple query (after clicking search study data) does …
7:52 AM Ticket #276 (When importing studies that have values that do not match a required ...) created by e.vansomeren@…
When importing studies that have values that do not match a required …

Jan 13, 2011:

6:23 PM Changeset [1401] by work@…
Tagging3the 0.6.2 release of 3GSCF'
6:22 PM Changeset [1400] by work@…
- and up to 0.6.3!
5:31 PM Changeset [1399] by business@…
forgot class import
5:29 PM Changeset [1398] by business@…
make sure manual adding of ontologies is only done in development and test
5:23 PM Changeset [1397] by work@…
- disable redirect into setup wizard as there is no setup wizard yet
3:51 PM Changeset [1396] by work@…
Tagging the 0.6.2 release of 'GSCF'
3:49 PM Changeset [1395] by work@…
- and we're up to milestone 0.6.2!
3:47 PM Changeset [1394] by t.w.abma@…
- added JS variable te get rid of warning when wanting to leave the …
3:45 PM Ticket #270 (importing subject information gives an error) closed by t.w.abma@…
fixed: Seems to work here, might be that some other issues have been solved …
3:41 PM Changeset [1393] by work@…
- fixed typo's
3:39 PM Ticket #263 (issue with unsaved data warning with importer) closed by work@…
fixed
3:39 PM Ticket #261 (Importer does not give feedback when initial form left empty) closed by work@…
fixed: closing issue…
3:39 PM Ticket #140 (Error when importing studies that have values that do not match a ...) closed by work@…
fixed: closing issue…
3:21 PM Ticket #267 (only 2011 can be selected) closed by work@…
fixed: as kees is not closing this issue, i'll do it…
3:20 PM Ticket #244 (Importer error after first step) closed by work@…
fixed: from the text above I assume this is resolved... closing the issue
3:19 PM Ticket #241 (validation of study instance show old error massages) closed by work@…
fixed: this was resolved, but not yet closed... closing issue
3:19 PM Ticket #168 (Import Study fails at Step 5: 0 out of 3 rows imported succesfully) closed by work@…
fixed: from the text above I assume this is resolved... closing the issue
3:16 PM Ticket #275 (adding an event to a study results in a hibernate exception: two ...) closed by work@…
fixed: Resolved in r1391, all study editting seems to work fine now!
3:15 PM Changeset [1392] by work@…
- resolves edit study wizard issues, main ticket #275
3:10 PM Changeset [1391] by t.w.abma@…
- added slider to mappings step in import wizard
1:03 PM Changeset [1390] by work@…
- quicksave sets the study page to page 7 (done) - set svn ignore
12:51 PM Changeset [1389] by work@…
- adding a simple edit study webtest
10:53 AM Changeset [1388] by t.w.abma@…
- added popup dialog with warning for first page of importer when not …
9:45 AM Changeset [1387] by t.w.abma@…
- authentication check added
12:32 AM Ticket #268 (field types names in template) closed by business@…
fixed: Implemented this in [1385] and [1386]
12:32 AM Changeset [1386] by business@…
change which hopefully fixes the first time run errors about …
12:24 AM Changeset [1385] by business@…
changed templatefieldtype descriptions according to #268

Jan 12, 2011:

10:00 PM Changeset [1384] by business@…
added webtest plugin and first (working) webtest, renamed 'test' …
5:37 PM Changeset [1383] by work@…
- removed jquery comment from config.groovy
5:35 PM Changeset [1382] by work@…
- upgraded ajaxflow to 0.1.16 --> grails 1.3.4 support - upgraded …
5:29 PM Changeset [1381] by t.w.abma@…
- removing cells, concurrentModificationException fixed?
5:14 PM Changeset [1380] by t.w.abma@…
- removing cells, concurrentModificationException fixed?
5:10 PM Changeset [1379] by t.w.abma@…
- removing cells, concurrentModificationException fixed?
4:59 PM Changeset [1378] by t.w.abma@…
- removing cells, concurrentModificationException fixed?
4:50 PM Changeset [1377] by t.w.abma@…
- removing cells, concurrentModificationException fixed?
3:59 PM Changeset [1376] by t.w.abma@…
- casting errors are nog being ignored, but are at least logged, …
3:26 PM Ticket #275 (adding an event to a study results in a hibernate exception: two ...) created by work@…
Steps to reproduce (on development): 1. studies -> create a new study …
3:19 PM Ticket #272 (error after quicksave events) closed by work@…
invalid: in order to resolve an issue, we need the stept to reproduce the …
3:18 PM Ticket #271 (storing subject info does not work) closed by work@…
invalid: I cannot do anything with this description... my clue is that this is …
3:09 PM Changeset [1375] by work@…
resolves issue #274
2:56 PM Ticket #274 (Height of the warning dialogs in the study wizard is endless) created by business@…
If you add e.g. 80 Rattus norvegicus using the Rat template in CI, not …
2:48 PM Changeset [1374] by work@…
workaround for #267
2:42 PM Changeset [1373] by business@…
added extra check in sample validation to avoid NPEs in case of broken …
2:14 PM Ticket #219 (Move out build scripts and secrets from GSCF repository) closed by work@…
fixed: Hi robert, I was indeed aware of that particular ticket... but as of …
2:13 PM Changeset [1372] by t.w.abma@…
- moved debug statement (locally no errors, but on CI gives NPE)
2:09 PM Changeset [1371] by t.w.abma@…
- moved debug statement (locally no errors, but on CI gives NPE)
1:53 PM Changeset [1370] by t.w.abma@…
- added debug
1:12 PM Ticket #273 (Application breaks after 'module notification' changes) closed by robert@…
fixed: As discussed, this change is automatically changed in the database by …
12:52 PM Changeset [1369] by t.w.abma@…
- added debug
12:12 PM Changeset [1368] by t.w.abma@…
- added debug
11:50 AM Changeset [1367] by t.w.abma@…
- added dialog (based on study wizard) for more detailed information …

Jan 11, 2011:

7:18 PM Ticket #259 (synchronization of data between modules and gscf) closed by robert@…
fixed: This change introduced a bug (see #273) which is also fixed. Closing now
7:15 PM Changeset [1366] by robert@…
Fixed bug with AssayModule?.notify property (see #269)
6:42 PM Ticket #273 (Application breaks after 'module notification' changes) created by work@…
As of r1356, r1357 the application is unstable: - the study overview …
6:36 PM Ticket #269 (description is string not text) closed by work@…
fixed
6:28 PM Ticket #269 (description is string not text) reopened by work@…
6:27 PM Ticket #269 (description is string not text) closed by work@…
fixed: resolved in r1365, assigning to Kees for code review
6:26 PM Changeset [1365] by work@…
- resolves issue #269, performing database upgrade if required (change …
6:19 PM Ticket #272 (error after quicksave events) created by jildau.bouwman@…
After including events and quicksaving the data, I get two different …
5:57 PM Ticket #271 (storing subject info does not work) created by jildau.bouwman@…
I am trying to store subject information in the diclofenac study …
5:38 PM Ticket #270 (importing subject information gives an error) created by jildau.bouwman@…
After trying to inport subject information in the diclofenac study …
5:25 PM Changeset [1364] by work@…
- and another one for issue #219, moved authentication to the …
5:21 PM Ticket #269 (description is string not text) created by jildau.bouwman@…
You will get an exception if the description field contains more then …
5:04 PM Ticket #268 (field types names in template) created by jildau.bouwman@…
In the template creation the field types should be chosen. From …
4:53 PM Ticket #267 (only 2011 can be selected) created by jildau.bouwman@…
If a study is created on ci.nmcdsp.org and a start date is being …
4:08 PM Changeset [1363] by work@…
- and another one for issue #219
3:43 PM Changeset [1362] by work@…
- and another one for issue #219
3:33 PM Changeset [1361] by work@…
- properties were not loaded in a war, trying a different location - #219
3:14 PM Changeset [1360] by work@…
- moving application configuration out of Config.groovy and …
2:09 PM Changeset [1359] by work@…
- setting max height in error dialog
1:08 PM Ticket #266 (going back in the importer wizard leads to less choices in fields) created by business@…
When you use the importer (e.g. with ScenarioEugene), and you go back …
12:46 PM Changeset [1358] by t.w.abma@…
- fixed study.id error when logged in as new user and trying to import …
12:06 PM Ticket #265 (A new user cannot import new studies via importer) created by business@…
If you create a new user (e.g. via login as admin and then create …

Jan 10, 2011:

4:44 PM Changeset [1357] by robert@…
Implemented module notification when a study changes (#259)
12:27 PM Ticket #258 (Module opens in very small frame) closed by robert@…
wontfix
11:39 AM WikiStart edited by business@…
(diff)
11:39 AM WikiStart edited by business@…
(diff)
11:38 AM WikiStart edited by business@…
(diff)
11:38 AM WikiStart edited by business@…
(diff)
11:37 AM WikiStart edited by business@…
(diff)
11:36 AM WikiStart edited by business@…
(diff)
11:12 AM Ticket #254 (Edit wizard stops working after some time with Javassist errors) closed by business@…
fixed: This seems to be solved now by [1350]. Closing this as after some …
11:00 AM Ticket #212 (search on PubMed ID) closed by robert@…
fixed: Fixed in latest revision r1356
10:58 AM Changeset [1356] by robert@…
Fixed message in #212
10:58 AM Ticket #210 (option to copy event template fields) closed by business@…
fixed: tested, works

Jan 9, 2011:

2:18 PM Changeset [1355] by work@…
Automated continuous integration commit of minified JS/CSS
1:53 PM Changeset [1354] by work@…
Automated continuous integration commit of minified JS/CSS

Jan 7, 2011:

7:05 PM Ticket #264 (After importing samples into a study the Sample step in the wizard is ...) created by business@…
If you create a new study, import Samples afterwards (which then don't …
6:44 PM Ticket #263 (issue with unsaved data warning with importer) created by business@…
When I'm done with the importer wizard, I constantly get the warning …
6:12 PM Changeset [1353] by work@…
- fixed some issues with ajaxbuttons that were still left unworking …
4:51 PM Changeset [1352] by work@…
- removed the 'wait for save page' as this is already being handled by …
4:43 PM Ticket #262 (When logged in as 'admin' on CI, the 'all studies' does not contain ...) created by work@…
The 'all studies' page should of course be a superset of 'my studies' …
4:38 PM Ticket #261 (Importer does not give feedback when initial form left empty) created by work@…
When you open the importer ( http://localhost:8080/gscf/importer or …
4:10 PM Changeset [1351] by work@…
- fix for Javassist issue #254, needs some thorough testing…
4:09 PM Changeset [1350] by work@…
- fix for Javassist issue #254, needs some thorough testing…
4:08 PM Changeset [1349] by work@…
- fix for Javassist issue #254, needs some thorough testing…
2:05 PM Changeset [1348] by work@…
- fix for Javassist issue #254, needs some thorough testing…
1:46 PM Changeset [1347] by work@…
- disabled loglevel info
9:22 AM Changeset [1346] by m.s.vanvliet@…
Added a timer to the Filters to monitor the load of controller/view
12:11 AM Changeset [1345] by work@…
Automated continuous integration commit of minified JS/CSS
12:10 AM Changeset [1344] by work@…
- changed the default spinner to an online spinner image

Jan 6, 2011:

11:54 PM Changeset [1343] by work@…
- updated documentation
11:46 PM Changeset [1342] by work@…
- updated documentation
5:33 PM Changeset [1341] by business@…
fix for development environment to circumvent BioPortal? problems
2:03 PM Ticket #260 (in Safari the publication and people buttons are not styled properly ...) created by work@…
The issue does not happen in Firefox / Chrome, so it looks like it's a …
10:15 AM Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create ...) closed by robert@…
fixed: It's better now

Jan 5, 2011:

5:35 PM Changeset [1340] by work@…
- upgraded to ajaxflow 0.1.14 (bugfixes)
3:10 PM Changeset [1339] by work@…
- fixed spelling error - removed validation in 'add subject' logic as …
2:49 PM Changeset [1338] by work@…
- must --> moet een
2:48 PM Changeset [1337] by work@…
- moest --> moet
2:04 PM Changeset [1336] by work@…
- importer used wizard.css instead of new studywizard.css
1:53 PM Changeset [1335] by t.w.abma@…
- added baseUrl variable to the add/modify... templateEditor selector …
1:43 PM Changeset [1334] by work@…
- added 'please wait' functionality to importer
1:31 PM Changeset [1333] by work@…
- updating to ajaxflow 0.1.12 - changed 'please wait' behaviour …
11:00 AM Changeset [1332] by t.w.abma@…
- fixed entity URL-decoding when importing the file
10:55 AM Changeset [1331] by t.w.abma@…
- fixed entity selection by adding URL-encoding and decoding to the …
10:34 AM Changeset [1330] by work@…
- temporary fix for jquery 1.4.4

Jan 4, 2011:

1:53 PM Changeset [1329] by work@…
- upgraded jquery to 1.4.4 - upgraded jquery-ui to 1.8.7 - upgraded …
11:13 AM Changeset [1328] by robert@…
Added metagenomics module and improved rest controller to give 404 and …

Jan 3, 2011:

9:01 AM Ticket #259 (synchronization of data between modules and gscf) created by robert@…
GSCF contains data about studies, assays and samples, and connections …

Dec 31, 2010:

2:47 PM Ticket #258 (Module opens in very small frame) created by robert@…
When clicking 'view' no the assay tab of a study, the other module …

Dec 30, 2010:

3:55 PM Ticket #257 (Deleting an assay only works after two clicks) created by robert@…
If I want to delete an assay, and click the delete button, nothing …
3:43 PM Ticket #256 (Module-select for assays doesn't show the selected value) created by robert@…
When editing a study, you can select a module for an assay. This works …
12:50 PM Ticket #255 (entity tokens should be stable) created by robert@…
The studyToken, sampleToken and assayToken can be changed by the user. …
10:08 AM Ticket #251 (I cannot store a new study on test.dbnp.org) closed by business@…
fixed: I found the stack trace. This was caused by [1245]. The description …
10:02 AM Changeset [1327] by business@…
made description field text, see [1245]
9:46 AM Ticket #254 (Edit wizard stops working after some time with Javassist errors) created by business@…
I still experience Javassist errors, almost always if you choose Edit …

Dec 29, 2010:

4:39 PM Ticket #253 (I cannot make a new template for the general study information) created by jildau.bouwman@…
Since today (yesterday I made q new template) I cannot make a new …
3:55 PM Ticket #252 (log in at two places is confusing) created by jildau.bouwman@…
Having the trac as I-frame in the dbnp.org site, results in having two …
3:53 PM Ticket #251 (I cannot store a new study on test.dbnp.org) created by jildau.bouwman@…
On test.dbnp.org quicksave leads to: error: exception → …

Dec 28, 2010:

9:15 AM Changeset [1326] by t.w.abma@…
- indendation fix
Note: See TracTimeline for information about the timeline view.