Timeline


and

11-01-11:

19:18 Ticket #259 (synchronization of data between modules and gscf) closed by robert@…
fixed: This change introduced a bug (see #273) which is also fixed. Closing now
19:15 Changeset [1366] by robert@…
Fixed bug with AssayModule?.notify property (see #269)
18:42 Ticket #273 (Application breaks after 'module notification' changes) created by work@…
As of r1356, r1357 the application is unstable: - the study overview page …
18:36 Ticket #269 (description is string not text) closed by work@…
fixed
18:28 Ticket #269 (description is string not text) reopened by work@…
18:27 Ticket #269 (description is string not text) closed by work@…
fixed: resolved in r1365, assigning to Kees for code review
18:26 Changeset [1365] by work@…
- resolves issue #269, performing database upgrade if required (change …
18:19 Ticket #272 (error after quicksave events) created by jildau.bouwman@…
After including events and quicksaving the data, I get two different …
17:57 Ticket #271 (storing subject info does not work) created by jildau.bouwman@…
I am trying to store subject information in the diclofenac study (6374), …
17:38 Ticket #270 (importing subject information gives an error) created by jildau.bouwman@…
After trying to inport subject information in the diclofenac study (6374), …
17:25 Changeset [1364] by work@…
- and another one for issue #219, moved authentication to the environment …
17:21 Ticket #269 (description is string not text) created by jildau.bouwman@…
You will get an exception if the description field contains more then 255 …
17:04 Ticket #268 (field types names in template) created by jildau.bouwman@…
In the template creation the field types should be chosen. From biologists …
16:53 Ticket #267 (only 2011 can be selected) created by jildau.bouwman@…
If a study is created on ci.nmcdsp.org and a start date is being defined, …
16:08 Changeset [1363] by work@…
- and another one for issue #219
15:43 Changeset [1362] by work@…
- and another one for issue #219
15:33 Changeset [1361] by work@…
- properties were not loaded in a war, trying a different location - #219
15:14 Changeset [1360] by work@…
- moving application configuration out of Config.groovy and …
14:09 Changeset [1359] by work@…
- setting max height in error dialog
13:08 Ticket #266 (going back in the importer wizard leads to less choices in fields) created by business@…
When you use the importer (e.g. with ScenarioEugene), and you go back from …
12:46 Changeset [1358] by t.w.abma@…
- fixed study.id error when logged in as new user and trying to import a …
12:06 Ticket #265 (A new user cannot import new studies via importer) created by business@…
If you create a new user (e.g. via login as admin and then create user) …

10-01-11:

16:44 Changeset [1357] by robert@…
Implemented module notification when a study changes (#259)
12:27 Ticket #258 (Module opens in very small frame) closed by robert@…
wontfix
11:39 WikiStart edited by business@…
(diff)
11:39 WikiStart edited by business@…
(diff)
11:38 WikiStart edited by business@…
(diff)
11:38 WikiStart edited by business@…
(diff)
11:37 WikiStart edited by business@…
(diff)
11:36 WikiStart edited by business@…
(diff)
11:12 Ticket #254 (Edit wizard stops working after some time with Javassist errors) closed by business@…
fixed: This seems to be solved now by [1350]. Closing this as after some serious …
11:00 Ticket #212 (search on PubMed ID) closed by robert@…
fixed: Fixed in latest revision r1356
10:58 Changeset [1356] by robert@…
Fixed message in #212
10:58 Ticket #210 (option to copy event template fields) closed by business@…
fixed: tested, works

09-01-11:

14:18 Changeset [1355] by work@…
Automated continuous integration commit of minified JS/CSS
13:53 Changeset [1354] by work@…
Automated continuous integration commit of minified JS/CSS

07-01-11:

19:05 Ticket #264 (After importing samples into a study the Sample step in the wizard is ...) created by business@…
If you create a new study, import Samples afterwards (which then don't …
18:44 Ticket #263 (issue with unsaved data warning with importer) created by business@…
When I'm done with the importer wizard, I constantly get the warning about …
18:12 Changeset [1353] by work@…
- fixed some issues with ajaxbuttons that were still left unworking after …
16:51 Changeset [1352] by work@…
- removed the 'wait for save page' as this is already being handled by the …
16:43 Ticket #262 (When logged in as 'admin' on CI, the 'all studies' does not contain ...) created by work@…
The 'all studies' page should of course be a superset of 'my studies' and …
16:38 Ticket #261 (Importer does not give feedback when initial form left empty) created by work@…
When you open the importer (  http://localhost:8080/gscf/importer or …
16:10 Changeset [1351] by work@…
- fix for Javassist issue #254, needs some thorough testing…
16:09 Changeset [1350] by work@…
- fix for Javassist issue #254, needs some thorough testing…
16:08 Changeset [1349] by work@…
- fix for Javassist issue #254, needs some thorough testing…
14:05 Changeset [1348] by work@…
- fix for Javassist issue #254, needs some thorough testing…
13:46 Changeset [1347] by work@…
- disabled loglevel info
09:22 Changeset [1346] by m.s.vanvliet@…
Added a timer to the Filters to monitor the load of controller/view
00:11 Changeset [1345] by work@…
Automated continuous integration commit of minified JS/CSS
00:10 Changeset [1344] by work@…
- changed the default spinner to an online spinner image

06-01-11:

23:54 Changeset [1343] by work@…
- updated documentation
23:46 Changeset [1342] by work@…
- updated documentation
17:33 Changeset [1341] by business@…
fix for development environment to circumvent BioPortal? problems
14:03 Ticket #260 (in Safari the publication and people buttons are not styled properly ...) created by work@…
The issue does not happen in Firefox / Chrome, so it looks like it's a …
10:15 Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create study ...) closed by robert@…
fixed: It's better now

05-01-11:

17:35 Changeset [1340] by work@…
- upgraded to ajaxflow 0.1.14 (bugfixes)
15:10 Changeset [1339] by work@…
- fixed spelling error - removed validation in 'add subject' logic as this …
14:49 Changeset [1338] by work@…
- must --> moet een
14:48 Changeset [1337] by work@…
- moest --> moet
14:04 Changeset [1336] by work@…
- importer used wizard.css instead of new studywizard.css
13:53 Changeset [1335] by t.w.abma@…
- added baseUrl variable to the add/modify... templateEditor selector …
13:43 Changeset [1334] by work@…
- added 'please wait' functionality to importer
13:31 Changeset [1333] by work@…
- updating to ajaxflow 0.1.12 - changed 'please wait' behaviour conform …
11:00 Changeset [1332] by t.w.abma@…
- fixed entity URL-decoding when importing the file
10:55 Changeset [1331] by t.w.abma@…
- fixed entity selection by adding URL-encoding and decoding to the …
10:34 Changeset [1330] by work@…
- temporary fix for jquery 1.4.4

04-01-11:

13:53 Changeset [1329] by work@…
- upgraded jquery to 1.4.4 - upgraded jquery-ui to 1.8.7 - upgraded mail …
11:13 Changeset [1328] by robert@…
Added metagenomics module and improved rest controller to give 404 and 401 …

03-01-11:

09:01 Ticket #259 (synchronization of data between modules and gscf) created by robert@…
GSCF contains data about studies, assays and samples, and connections …

31-12-10:

14:47 Ticket #258 (Module opens in very small frame) created by robert@…
When clicking 'view' no the assay tab of a study, the other module opens …

30-12-10:

15:55 Ticket #257 (Deleting an assay only works after two clicks) created by robert@…
If I want to delete an assay, and click the delete button, nothing …
15:43 Ticket #256 (Module-select for assays doesn't show the selected value) created by robert@…
When editing a study, you can select a module for an assay. This works …
12:50 Ticket #255 (entity tokens should be stable) created by robert@…
The studyToken, sampleToken and assayToken can be changed by the user. …
10:08 Ticket #251 (I cannot store a new study on test.dbnp.org) closed by business@…
fixed: I found the stack trace. This was caused by [1245]. The description field …
10:02 Changeset [1327] by business@…
made description field text, see [1245]
09:46 Ticket #254 (Edit wizard stops working after some time with Javassist errors) created by business@…
I still experience Javassist errors, almost always if you choose Edit a …

29-12-10:

16:39 Ticket #253 (I cannot make a new template for the general study information) created by jildau.bouwman@…
Since today (yesterday I made q new template) I cannot make a new template …
15:55 Ticket #252 (log in at two places is confusing) created by jildau.bouwman@…
Having the trac as I-frame in the dbnp.org site, results in having two …
15:53 Ticket #251 (I cannot store a new study on test.dbnp.org) created by jildau.bouwman@…
On test.dbnp.org quicksave leads to: error: exception → …

28-12-10:

09:15 Changeset [1326] by t.w.abma@…
- indendation fix

24-12-10:

12:53 Changeset [1325] by robert@…
Resolved bug in searching publications due to wizard refactoring. See #212
12:44 Ticket #250 (Implement better authentication) created by robert@…
With ticket #118, basic authentication is added to the system. However, …

23-12-10:

13:44 Changeset [1324] by t.w.abma@…
- tomcat trigger
13:07 Changeset [1323] by t.w.abma@…
- tomcat trigger
11:36 Changeset [1322] by t.w.abma@…
- fixed properties page
10:57 Ticket #249 (Make importer capable of updating records) created by robert@…
Using the importer, new data (studies, samples, subjects etc.) can be …

22-12-10:

18:46 Changeset [1321] by work@…
Automated continuous integration commit of minified JS/CSS
18:15 Changeset [1320] by work@…
Automated continuous integration commit of minified JS/CSS
17:53 Changeset [1319] by work@…
- updated ajaxflow to 0.1.10 - added spinner / please wait support to …
16:48 Ticket #248 (Searching for synonyms in ontologyterm fields when importing) created by robert@…
When importing an excel sheet, the values that go into an ontology term …
16:45 Ticket #247 (Add more results to term editor and publication chooser) created by robert@…
When I want to add a new term to an ontology, I can search for it using …
15:31 Changeset [1318] by t.w.abma@…
- removed obsolete code
15:26 Changeset [1317] by t.w.abma@…
- seems that depending on the Excel-sheet type a XSSFCell or HSSFCell is …
15:21 Changeset [1316] by t.w.abma@…
- trigger for restart (committed too fast between to commits?)
15:16 Changeset [1315] by t.w.abma@…
- replaced HSSFCell by XSSFCell-object (returned when getting a cell from …
14:42 Changeset [1314] by work@…
- fixed descriptions for Sample and Subject, see #246
14:14 Ticket #246 (Term not found in subject.species ontology chooser) closed by work@…
wontfix: NEWT does not exist in the NCBO Bioportal, so it is currently not …
14:08 Changeset [1313] by t.w.abma@…
- removed URL-encoding of encrypted "importable entities"
13:43 Changeset [1312] by work@…
- removed debug line
13:39 Changeset [1311] by t.w.abma@…
- removed parent-setters from saveDatamatrix-method in ImporterService? - …
09:57 Ticket #246 (Term not found in subject.species ontology chooser) created by robert@…
I want to add a subject with species 'groundwater metagenome'. This is a …

21-12-10:

16:45 Changeset [1310] by work@…
- title is not required for clicking on tabs
16:42 Changeset [1309] by work@…
- adding feature #208, clickable breadcrumbs / tabs as subtask of #183
15:28 Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create study ...) created by robert@…
When the create study wizard loads some page using ajax, the user is left …
15:27 Changeset [1308] by work@…
- fixing sub-task #209 (of #183)
15:09 Changeset [1307] by work@…
- updated ajaxflow to 0.1.9 (fix camelCase ajaxflow issues)
14:35 Changeset [1306] by work@…
- crypto shared secret is now randomly generated on application startup
14:22 Changeset [1305] by t.w.abma@…
- fixed minor bugs in the import wizard introduced by rewritten …
14:21 Changeset [1304] by work@…
- and redirecting into studyWizard instead of studywizard (views)
14:18 Changeset [1303] by work@…
and to final destination
14:17 Changeset [1302] by work@…
temp move of template
14:08 Changeset [1301] by work@…
- upgraded grom to 0.2.1 - enabled debug loglevel for debugging ci issues
12:59 Changeset [1300] by work@…
- intellij marks this file red because of 'error()' in a comment
12:40 Changeset [1299] by work@…
- buildinfo class conflicted with info class in study wizard
12:32 Changeset [1298] by work@…
- disabled debug and info loglevels for debugging ci instance
12:25 Changeset [1297] by work@…
- enabled debug and info loglevels for debugging ci instance
12:12 Ticket #244 (Importer error after first step) created by business@…
After trying to import a sample sheet: 2010-12-21 12:08:17,675 …
11:58 Changeset [1296] by t.w.abma@…
- fixed JS-reference
11:04 Changeset [1295] by robert@…
Making it possible to search on pubmed ID (#212)
10:40 Ticket #243 (Application shows multiple languages mixed up) created by robert@…
When you use a Dutch browser (or Dutch OS, I'm not really sure), a part of …
01:28 Changeset [1294] by work@…
- commented triggerevent for testing
01:16 Changeset [1293] by work@…
- uncommented triggerevent for testing
00:44 Changeset [1292] by work@…
- removed some obsolete debug printlns
00:37 Changeset [1291] by work@…
and two
00:37 Changeset [1290] by work@…
grr, again... temp commit 1
00:34 Changeset [1289] by work@…
temp rename commit 2
00:33 Changeset [1288] by work@…
temp rename commit 1
00:20 Changeset [1287] by work@…
- removing obsolete wizard views
00:04 Changeset [1286] by work@…
- BIG refactoring / rewrite of the wizard to use the ajaxflow plugin, part …

20-12-10:

17:40 Ticket #242 (Incorrect error when not adding a sampling event) closed by work@…
wontfix: True, but that is by design as the error has been added to the Dutch i18n …
17:36 Ticket #206 (Create Study fails when using non-standard Assay) closed by work@…
wontfix: Apparently, somehow the template editor inserted a 'null' field for some …
16:28 Changeset [1285] by work@…
- resolved #242, incorrect error messages. Also moved the messages …
15:48 Changeset [1284] by work@…
- resolves issue #241
15:47 Ticket #242 (Incorrect error when not adding a sampling event) created by robert@…
When creating a study, an error appears when no events are created: "In …
15:33 Ticket #241 (validation of study instance show old error massages) created by work@…
This new issue is relate to #233. It is actually caused by …
15:01 Changeset [1283] by work@…
- added comment
15:00 Changeset [1282] by work@…
resolves #210, added possibility to duplicate events
14:28 Ticket #240 (Improve study page of study-create-wizard) created by robert@…
It would be great to improve the study page (first page) of the …
12:20 Ticket #62 (importing subjects without the species gives a message too late) closed by business@…
fixed: Fixed now with ontology validate
12:10 Ticket #205 (Easier renaming of subjects in study creation wizard) closed by business@…
wontfix: See #239.
12:09 Ticket #239 (Integrate Excel importer into the wizard) created by business@…
Integrate Excel importer into each step of the study wizard
12:03 Ticket #169 (log in for view studies) closed by business@…
fixed: Login is visible now
09:51 Ticket #233 ("NTC Study" template on CI instance contains required fields that are not ...) closed by business@…
fixed: Works fine as far as I have tested it! The code has a lot of duplication, …
09:47 Ticket #76 (update ontology descriptors + exchange templates via XML or RDF) closed by business@…
fixed: Tested, works fine!
09:43 Ticket #68 (selecting multiple subjects in 5. Groups would be useful) closed by business@…
fixed: Now this is possible.
09:43 Ticket #40 (attemt to save study gives error message) closed by business@…
worksforme: Fixed (see #50).
09:42 Ticket #35 (deleted groups in even template show up again after saving) closed by business@…
fixed: Fixed.
09:41 Ticket #33 (simple import wizard, import subects gives some problems) closed by business@…
fixed: These issues are resolved now.
09:41 Ticket #30 (edit study results in duplicate fields, and deleted fields do not get ...) closed by business@…
fixed: This is now resolved.
09:40 Ticket #29 (Searchable gives NumberFormatException, does not return correct search ...) closed by business@…
wontfix: Closing this issue as the current code doesn't give this error anymore.
08:38 Ticket #182 (Implement the import wizard as a webflow) closed by t.w.abma@…
fixed: Chose to rewrite into Ajaxflow already last week, adds some more …

16-12-10:

18:45 Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
wontfix: most likely duplicate to #187... closing this now, I know this issue has …
18:36 Ticket #238 (Strange error message 0 errors in ontology popup) reopened by business@…
It happens on demo.dbnp.org, for example in the species dropdown: Oops! …
16:08 Changeset [1281] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, added common pages
15:46 Changeset [1280] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, deleted old files
15:44 Changeset [1279] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:43 Changeset [1278] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:42 Changeset [1277] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:22 Ticket #228 (Date field in study capture wizard causes an exception) closed by work@…
worksforme: tried it with chrome, safari and firefox, cannot reproduce…
15:19 Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
worksforme: cannot reproduce…
15:16 Changeset [1276] by work@…
- change z-index for toppannel so it's always on top of everything (set to …
14:52 Changeset [1275] by work@…
- updated project to Grails 1.3.6, release notes: …
05:00 Ticket #238 (Strange error message 0 errors in ontology popup) created by business@…
When you click add more... on an ontology field, you get an annoying …

15-12-10:

13:53 Changeset [1274] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:47 Changeset [1273] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:44 Changeset [1272] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:36 Changeset [1271] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:32 Changeset [1270] by robert@…
Bugfix in importing templates (ticket #76)
13:20 Changeset [1269] by robert@…
Fixed bug in importing templates without any fields and improved views …
13:17 Changeset [1268] by work@…
- new facebook like image - new favicon
12:44 Ticket #231 (timeline doesn't appear after visiting other tabs) closed by robert@…
fixed: Solved in r1266. The timeline is now loaded when opening the show-study …
12:42 Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) closed by robert@…
fixed: Fixed in r1266. Make sure to always use the trick on …
12:41 Ticket #232 (facebook link breaks menu in IE7) closed by robert@…
fixed: Fixed in r1266 by improving the z-index values of different elements.
12:40 Changeset [1267] by work@…
Automated continuous integration commit of minified JS/CSS
12:40 Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) closed by robert@…
fixed: Both problems have been solved in r1266.
12:39 Changeset [1266] by robert@…
Fixed several IE7 bugs. See tickets #231, #232, #234 and #237

14-12-10:

18:06 Changeset [1265] by work@…
- changing z-indexes of navigation and facebook like to see if issue #232
17:44 Changeset [1264] by work@…
resolves issue #233, validation of an object which inherits from …
16:20 Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) created by robert@…
I've been trying to import an excel sheet using IE7. Most steps work fine, …
16:04 Ticket #236 (Template editor can't be opened from importer wizard) created by robert@…
When I go to the importer wizard on the ci-instance …

13-12-10:

20:29 Changeset [1263] by robert@…
- Solved bug in exporting templates with null values - Solved bug in …
15:18 Ticket #235 (Retrieving publications from pubmed can't handle non-ascii characters) created by robert@…
In the study wizard, it is possible to look up a publication on pubmed. …
14:49 Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) created by robert@…
When I go to the study create wizard, to the step 'subjects' or 'events', …
12:10 Changeset [1262] by s.h.sikkema@…
Added assays link in topnav
11:50 Changeset [1261] by s.h.sikkema@…
Changed jumbar layout to simple iframe for modules
Note: See TracTimeline for information about the timeline view.