Timeline


and

Jan 7, 2011:

7:05 PM Ticket #264 (After importing samples into a study the Sample step in the wizard is ...) created by business@…
If you create a new study, import Samples afterwards (which then don't …
6:44 PM Ticket #263 (issue with unsaved data warning with importer) created by business@…
When I'm done with the importer wizard, I constantly get the warning …
6:12 PM Changeset [1353] by work@…
- fixed some issues with ajaxbuttons that were still left unworking …
4:51 PM Changeset [1352] by work@…
- removed the 'wait for save page' as this is already being handled by …
4:43 PM Ticket #262 (When logged in as 'admin' on CI, the 'all studies' does not contain ...) created by work@…
The 'all studies' page should of course be a superset of 'my studies' …
4:38 PM Ticket #261 (Importer does not give feedback when initial form left empty) created by work@…
When you open the importer ( http://localhost:8080/gscf/importer or …
4:10 PM Changeset [1351] by work@…
- fix for Javassist issue #254, needs some thorough testing…
4:09 PM Changeset [1350] by work@…
- fix for Javassist issue #254, needs some thorough testing…
4:08 PM Changeset [1349] by work@…
- fix for Javassist issue #254, needs some thorough testing…
2:05 PM Changeset [1348] by work@…
- fix for Javassist issue #254, needs some thorough testing…
1:46 PM Changeset [1347] by work@…
- disabled loglevel info
9:22 AM Changeset [1346] by m.s.vanvliet@…
Added a timer to the Filters to monitor the load of controller/view
12:11 AM Changeset [1345] by work@…
Automated continuous integration commit of minified JS/CSS
12:10 AM Changeset [1344] by work@…
- changed the default spinner to an online spinner image

Jan 6, 2011:

11:54 PM Changeset [1343] by work@…
- updated documentation
11:46 PM Changeset [1342] by work@…
- updated documentation
5:33 PM Changeset [1341] by business@…
fix for development environment to circumvent BioPortal? problems
2:03 PM Ticket #260 (in Safari the publication and people buttons are not styled properly ...) created by work@…
The issue does not happen in Firefox / Chrome, so it looks like it's a …
10:15 AM Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create ...) closed by robert@…
fixed: It's better now

Jan 5, 2011:

5:35 PM Changeset [1340] by work@…
- upgraded to ajaxflow 0.1.14 (bugfixes)
3:10 PM Changeset [1339] by work@…
- fixed spelling error - removed validation in 'add subject' logic as …
2:49 PM Changeset [1338] by work@…
- must --> moet een
2:48 PM Changeset [1337] by work@…
- moest --> moet
2:04 PM Changeset [1336] by work@…
- importer used wizard.css instead of new studywizard.css
1:53 PM Changeset [1335] by t.w.abma@…
- added baseUrl variable to the add/modify... templateEditor selector …
1:43 PM Changeset [1334] by work@…
- added 'please wait' functionality to importer
1:31 PM Changeset [1333] by work@…
- updating to ajaxflow 0.1.12 - changed 'please wait' behaviour …
11:00 AM Changeset [1332] by t.w.abma@…
- fixed entity URL-decoding when importing the file
10:55 AM Changeset [1331] by t.w.abma@…
- fixed entity selection by adding URL-encoding and decoding to the …
10:34 AM Changeset [1330] by work@…
- temporary fix for jquery 1.4.4

Jan 4, 2011:

1:53 PM Changeset [1329] by work@…
- upgraded jquery to 1.4.4 - upgraded jquery-ui to 1.8.7 - upgraded …
11:13 AM Changeset [1328] by robert@…
Added metagenomics module and improved rest controller to give 404 and …

Jan 3, 2011:

9:01 AM Ticket #259 (synchronization of data between modules and gscf) created by robert@…
GSCF contains data about studies, assays and samples, and connections …

Dec 31, 2010:

2:47 PM Ticket #258 (Module opens in very small frame) created by robert@…
When clicking 'view' no the assay tab of a study, the other module …

Dec 30, 2010:

3:55 PM Ticket #257 (Deleting an assay only works after two clicks) created by robert@…
If I want to delete an assay, and click the delete button, nothing …
3:43 PM Ticket #256 (Module-select for assays doesn't show the selected value) created by robert@…
When editing a study, you can select a module for an assay. This works …
12:50 PM Ticket #255 (entity tokens should be stable) created by robert@…
The studyToken, sampleToken and assayToken can be changed by the user. …
10:08 AM Ticket #251 (I cannot store a new study on test.dbnp.org) closed by business@…
fixed: I found the stack trace. This was caused by [1245]. The description …
10:02 AM Changeset [1327] by business@…
made description field text, see [1245]
9:46 AM Ticket #254 (Edit wizard stops working after some time with Javassist errors) created by business@…
I still experience Javassist errors, almost always if you choose Edit …

Dec 29, 2010:

4:39 PM Ticket #253 (I cannot make a new template for the general study information) created by jildau.bouwman@…
Since today (yesterday I made q new template) I cannot make a new …
3:55 PM Ticket #252 (log in at two places is confusing) created by jildau.bouwman@…
Having the trac as I-frame in the dbnp.org site, results in having two …
3:53 PM Ticket #251 (I cannot store a new study on test.dbnp.org) created by jildau.bouwman@…
On test.dbnp.org quicksave leads to: error: exception → …

Dec 28, 2010:

9:15 AM Changeset [1326] by t.w.abma@…
- indendation fix

Dec 24, 2010:

12:53 PM Changeset [1325] by robert@…
Resolved bug in searching publications due to wizard refactoring. See #212
12:44 PM Ticket #250 (Implement better authentication) created by robert@…
With ticket #118, basic authentication is added to the system. …

Dec 23, 2010:

1:44 PM Changeset [1324] by t.w.abma@…
- tomcat trigger
1:07 PM Changeset [1323] by t.w.abma@…
- tomcat trigger
11:36 AM Changeset [1322] by t.w.abma@…
- fixed properties page
10:57 AM Ticket #249 (Make importer capable of updating records) created by robert@…
Using the importer, new data (studies, samples, subjects etc.) can be …

Dec 22, 2010:

6:46 PM Changeset [1321] by work@…
Automated continuous integration commit of minified JS/CSS
6:15 PM Changeset [1320] by work@…
Automated continuous integration commit of minified JS/CSS
5:53 PM Changeset [1319] by work@…
- updated ajaxflow to 0.1.10 - added spinner / please wait support to …
4:48 PM Ticket #248 (Searching for synonyms in ontologyterm fields when importing) created by robert@…
When importing an excel sheet, the values that go into an ontology …
4:45 PM Ticket #247 (Add more results to term editor and publication chooser) created by robert@…
When I want to add a new term to an ontology, I can search for it …
3:31 PM Changeset [1318] by t.w.abma@…
- removed obsolete code
3:26 PM Changeset [1317] by t.w.abma@…
- seems that depending on the Excel-sheet type a XSSFCell or HSSFCell …
3:21 PM Changeset [1316] by t.w.abma@…
- trigger for restart (committed too fast between to commits?)
3:16 PM Changeset [1315] by t.w.abma@…
- replaced HSSFCell by XSSFCell-object (returned when getting a cell …
2:42 PM Changeset [1314] by work@…
- fixed descriptions for Sample and Subject, see #246
2:14 PM Ticket #246 (Term not found in subject.species ontology chooser) closed by work@…
wontfix: NEWT does not exist in the NCBO Bioportal, so it is currently not …
2:08 PM Changeset [1313] by t.w.abma@…
- removed URL-encoding of encrypted "importable entities"
1:43 PM Changeset [1312] by work@…
- removed debug line
1:39 PM Changeset [1311] by t.w.abma@…
- removed parent-setters from saveDatamatrix-method in ImporterService?
9:57 AM Ticket #246 (Term not found in subject.species ontology chooser) created by robert@…
I want to add a subject with species 'groundwater metagenome'. This is …

Dec 21, 2010:

4:45 PM Changeset [1310] by work@…
- title is not required for clicking on tabs
4:42 PM Changeset [1309] by work@…
- adding feature #208, clickable breadcrumbs / tabs as subtask of #183
3:28 PM Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create ...) created by robert@…
When the create study wizard loads some page using ajax, the user is …
3:27 PM Changeset [1308] by work@…
- fixing sub-task #209 (of #183)
3:09 PM Changeset [1307] by work@…
- updated ajaxflow to 0.1.9 (fix camelCase ajaxflow issues)
2:35 PM Changeset [1306] by work@…
- crypto shared secret is now randomly generated on application startup
2:22 PM Changeset [1305] by t.w.abma@…
- fixed minor bugs in the import wizard introduced by rewritten …
2:21 PM Changeset [1304] by work@…
- and redirecting into studyWizard instead of studywizard (views)
2:18 PM Changeset [1303] by work@…
and to final destination
2:17 PM Changeset [1302] by work@…
temp move of template
2:08 PM Changeset [1301] by work@…
- upgraded grom to 0.2.1 - enabled debug loglevel for debugging ci issues
12:59 PM Changeset [1300] by work@…
- intellij marks this file red because of 'error()' in a comment
12:40 PM Changeset [1299] by work@…
- buildinfo class conflicted with info class in study wizard
12:32 PM Changeset [1298] by work@…
- disabled debug and info loglevels for debugging ci instance
12:25 PM Changeset [1297] by work@…
- enabled debug and info loglevels for debugging ci instance
12:12 PM Ticket #244 (Importer error after first step) created by business@…
After trying to import a sample sheet: 2010-12-21 12:08:17,675 …
11:58 AM Changeset [1296] by t.w.abma@…
- fixed JS-reference
11:04 AM Changeset [1295] by robert@…
Making it possible to search on pubmed ID (#212)
10:40 AM Ticket #243 (Application shows multiple languages mixed up) created by robert@…
When you use a Dutch browser (or Dutch OS, I'm not really sure), a …
1:28 AM Changeset [1294] by work@…
- commented triggerevent for testing
1:16 AM Changeset [1293] by work@…
- uncommented triggerevent for testing
12:44 AM Changeset [1292] by work@…
- removed some obsolete debug printlns
12:37 AM Changeset [1291] by work@…
and two
12:37 AM Changeset [1290] by work@…
grr, again... temp commit 1
12:34 AM Changeset [1289] by work@…
temp rename commit 2
12:33 AM Changeset [1288] by work@…
temp rename commit 1
12:20 AM Changeset [1287] by work@…
- removing obsolete wizard views
12:04 AM Changeset [1286] by work@…
- BIG refactoring / rewrite of the wizard to use the ajaxflow plugin, …

Dec 20, 2010:

5:40 PM Ticket #242 (Incorrect error when not adding a sampling event) closed by work@…
wontfix: True, but that is by design as the error has been added to the Dutch …
5:36 PM Ticket #206 (Create Study fails when using non-standard Assay) closed by work@…
wontfix: Apparently, somehow the template editor inserted a 'null' field for …
4:28 PM Changeset [1285] by work@…
- resolved #242, incorrect error messages. Also moved the messages …
3:48 PM Changeset [1284] by work@…
- resolves issue #241
3:47 PM Ticket #242 (Incorrect error when not adding a sampling event) created by robert@…
When creating a study, an error appears when no events are created: …
3:33 PM Ticket #241 (validation of study instance show old error massages) created by work@…
This new issue is relate to #233. It is actually caused by …
3:01 PM Changeset [1283] by work@…
- added comment
3:00 PM Changeset [1282] by work@…
resolves #210, added possibility to duplicate events
2:28 PM Ticket #240 (Improve study page of study-create-wizard) created by robert@…
It would be great to improve the study page (first page) of the …
12:20 PM Ticket #62 (importing subjects without the species gives a message too late) closed by business@…
fixed: Fixed now with ontology validate
12:10 PM Ticket #205 (Easier renaming of subjects in study creation wizard) closed by business@…
wontfix: See #239.
12:09 PM Ticket #239 (Integrate Excel importer into the wizard) created by business@…
Integrate Excel importer into each step of the study wizard
12:03 PM Ticket #169 (log in for view studies) closed by business@…
fixed: Login is visible now
9:51 AM Ticket #233 ("NTC Study" template on CI instance contains required fields that are ...) closed by business@…
fixed: Works fine as far as I have tested it! The code has a lot of …
9:47 AM Ticket #76 (update ontology descriptors + exchange templates via XML or RDF) closed by business@…
fixed: Tested, works fine!
9:43 AM Ticket #68 (selecting multiple subjects in 5. Groups would be useful) closed by business@…
fixed: Now this is possible.
9:43 AM Ticket #40 (attemt to save study gives error message) closed by business@…
worksforme: Fixed (see #50).
9:42 AM Ticket #35 (deleted groups in even template show up again after saving) closed by business@…
fixed: Fixed.
9:41 AM Ticket #33 (simple import wizard, import subects gives some problems) closed by business@…
fixed: These issues are resolved now.
9:41 AM Ticket #30 (edit study results in duplicate fields, and deleted fields do not get ...) closed by business@…
fixed: This is now resolved.
9:40 AM Ticket #29 (Searchable gives NumberFormatException, does not return correct search ...) closed by business@…
wontfix: Closing this issue as the current code doesn't give this error anymore.
8:38 AM Ticket #182 (Implement the import wizard as a webflow) closed by t.w.abma@…
fixed: Chose to rewrite into Ajaxflow already last week, adds some more …

Dec 16, 2010:

6:45 PM Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
wontfix: most likely duplicate to #187... closing this now, I know this issue …
6:36 PM Ticket #238 (Strange error message 0 errors in ontology popup) reopened by business@…
It happens on demo.dbnp.org, for example in the species dropdown: …
4:08 PM Changeset [1281] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, added common pages
3:46 PM Changeset [1280] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, deleted old files
3:44 PM Changeset [1279] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
3:43 PM Changeset [1278] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
3:42 PM Changeset [1277] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
3:22 PM Ticket #228 (Date field in study capture wizard causes an exception) closed by work@…
worksforme: tried it with chrome, safari and firefox, cannot reproduce…
3:19 PM Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
worksforme: cannot reproduce…
3:16 PM Changeset [1276] by work@…
- change z-index for toppannel so it's always on top of everything …
2:52 PM Changeset [1275] by work@…
- updated project to Grails 1.3.6, release notes: …
5:00 AM Ticket #238 (Strange error message 0 errors in ontology popup) created by business@…
When you click add more... on an ontology field, you get an annoying …

Dec 15, 2010:

1:53 PM Changeset [1274] by robert@…
Trying to solve a bug that only appears on ci, not locally, in …
1:47 PM Changeset [1273] by robert@…
Trying to solve a bug that only appears on ci, not locally, in …
1:44 PM Changeset [1272] by robert@…
Trying to solve a bug that only appears on ci, not locally, in …
1:36 PM Changeset [1271] by robert@…
Trying to solve a bug that only appears on ci, not locally, in …
1:32 PM Changeset [1270] by robert@…
Bugfix in importing templates (ticket #76)
1:20 PM Changeset [1269] by robert@…
Fixed bug in importing templates without any fields and improved views …
1:17 PM Changeset [1268] by work@…
- new facebook like image - new favicon
12:44 PM Ticket #231 (timeline doesn't appear after visiting other tabs) closed by robert@…
fixed: Solved in r1266. The timeline is now loaded when opening the …
12:42 PM Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) closed by robert@…
fixed: Fixed in r1266. Make sure to always use the trick on …
12:41 PM Ticket #232 (facebook link breaks menu in IE7) closed by robert@…
fixed: Fixed in r1266 by improving the z-index values of different elements.
12:40 PM Changeset [1267] by work@…
Automated continuous integration commit of minified JS/CSS
12:40 PM Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) closed by robert@…
fixed: Both problems have been solved in r1266.
12:39 PM Changeset [1266] by robert@…
Fixed several IE7 bugs. See tickets #231, #232, #234 and #237

Dec 14, 2010:

6:06 PM Changeset [1265] by work@…
- changing z-indexes of navigation and facebook like to see if issue …
5:44 PM Changeset [1264] by work@…
resolves issue #233, validation of an object which inherits from …
4:20 PM Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) created by robert@…
I've been trying to import an excel sheet using IE7. Most steps work …
4:04 PM Ticket #236 (Template editor can't be opened from importer wizard) created by robert@…
When I go to the importer wizard on the ci-instance …

Dec 13, 2010:

8:29 PM Changeset [1263] by robert@…
- Solved bug in exporting templates with null values - Solved bug in …
3:18 PM Ticket #235 (Retrieving publications from pubmed can't handle non-ascii characters) created by robert@…
In the study wizard, it is possible to look up a publication on …
2:49 PM Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) created by robert@…
When I go to the study create wizard, to the step 'subjects' or …
12:10 PM Changeset [1262] by s.h.sikkema@…
Added assays link in topnav
11:50 AM Changeset [1261] by s.h.sikkema@…
Changed jumbar layout to simple iframe for modules

Dec 10, 2010:

3:37 PM Ticket #233 ("NTC Study" template on CI instance contains required fields that are ...) created by work@…
These fields are marked properly with the arrow in the study page of …
3:12 PM Changeset [1260] by work@…
- resolves #198, user friendly error messages in wizard
3:11 PM Ticket #229 (Implement 'before close' in dialog popups (ontology chooser, template ...) closed by work@…
duplicate: duplicate of #230
1:39 PM Ticket #232 (facebook link breaks menu in IE7) created by robert@…
If I open a menu in IE7 (e.g. Studies), I can only select the topmost …
11:24 AM Changeset [1259] by work@…
- getAllErrors.join will break your application as getAllErrors is a …
10:45 AM Changeset [1258] by work@…
- updated image

Dec 9, 2010:

9:12 PM Changeset [1257] by robert@…
Added an export and import functionality for templates, as described …
6:07 PM Changeset [1256] by work@…
- 0.6.1 has been long overdue. Updating to 0.6.1 even though #140 has …
5:49 PM Changeset [1255] by work@…
- fixed an issue with the automated database upgrade where the idx's …
5:04 PM Changeset [1254] by work@…
- fixed null issue in study view
5:00 PM Changeset [1253] by work@…
- fixed null issue in study view
4:38 PM Changeset [1252] by work@…
- fixed null issue in study view
4:23 PM Changeset [1251] by work@…
- template_template_field references needed to be removed as well
4:18 PM Changeset [1250] by work@…
- set keyword expansion
4:17 PM Changeset [1249] by work@…
- finalizing database upgrade script with delete statements
4:12 PM Changeset [1248] by work@…
- testing database upgrade on ci
3:47 PM Changeset [1247] by work@…
- adding initial version of automatic database upgrade script
3:11 PM Changeset [1246] by work@…
- made description a required field
2:51 PM Changeset [1245] by work@…
- moved 'description' from study template fields into domain variables …
2:24 PM Changeset [1244] by work@…
- as description is a template field and hence may not exist in a …
2:12 PM Changeset [1243] by work@…
- added open graph description tag
1:58 PM Changeset [1242] by work@…
- added Facebook open graph tags - added Facebook like button to front page
1:26 PM Changeset [1241] by work@…
- added Facebook like support
11:36 AM Changeset [1240] by work@…
- small bugfix in ajaxflow af:flow tag, upgrading ajaxflow to 0.1.8
Note: See TracTimeline for information about the timeline view.