Timeline


and

30-12-10:

15:55 Ticket #257 (Deleting an assay only works after two clicks) created by robert@…
If I want to delete an assay, and click the delete button, nothing …
15:43 Ticket #256 (Module-select for assays doesn't show the selected value) created by robert@…
When editing a study, you can select a module for an assay. This works …
12:50 Ticket #255 (entity tokens should be stable) created by robert@…
The studyToken, sampleToken and assayToken can be changed by the user. …
10:08 Ticket #251 (I cannot store a new study on test.dbnp.org) closed by business@…
fixed: I found the stack trace. This was caused by [1245]. The description field …
10:02 Changeset [1327] by business@…
made description field text, see [1245]
09:46 Ticket #254 (Edit wizard stops working after some time with Javassist errors) created by business@…
I still experience Javassist errors, almost always if you choose Edit a …

29-12-10:

16:39 Ticket #253 (I cannot make a new template for the general study information) created by jildau.bouwman@…
Since today (yesterday I made q new template) I cannot make a new template …
15:55 Ticket #252 (log in at two places is confusing) created by jildau.bouwman@…
Having the trac as I-frame in the dbnp.org site, results in having two …
15:53 Ticket #251 (I cannot store a new study on test.dbnp.org) created by jildau.bouwman@…
On test.dbnp.org quicksave leads to: error: exception → …

28-12-10:

09:15 Changeset [1326] by t.w.abma@…
- indendation fix

24-12-10:

12:53 Changeset [1325] by robert@…
Resolved bug in searching publications due to wizard refactoring. See #212
12:44 Ticket #250 (Implement better authentication) created by robert@…
With ticket #118, basic authentication is added to the system. However, …

23-12-10:

13:44 Changeset [1324] by t.w.abma@…
- tomcat trigger
13:07 Changeset [1323] by t.w.abma@…
- tomcat trigger
11:36 Changeset [1322] by t.w.abma@…
- fixed properties page
10:57 Ticket #249 (Make importer capable of updating records) created by robert@…
Using the importer, new data (studies, samples, subjects etc.) can be …

22-12-10:

18:46 Changeset [1321] by work@…
Automated continuous integration commit of minified JS/CSS
18:15 Changeset [1320] by work@…
Automated continuous integration commit of minified JS/CSS
17:53 Changeset [1319] by work@…
- updated ajaxflow to 0.1.10 - added spinner / please wait support to …
16:48 Ticket #248 (Searching for synonyms in ontologyterm fields when importing) created by robert@…
When importing an excel sheet, the values that go into an ontology term …
16:45 Ticket #247 (Add more results to term editor and publication chooser) created by robert@…
When I want to add a new term to an ontology, I can search for it using …
15:31 Changeset [1318] by t.w.abma@…
- removed obsolete code
15:26 Changeset [1317] by t.w.abma@…
- seems that depending on the Excel-sheet type a XSSFCell or HSSFCell is …
15:21 Changeset [1316] by t.w.abma@…
- trigger for restart (committed too fast between to commits?)
15:16 Changeset [1315] by t.w.abma@…
- replaced HSSFCell by XSSFCell-object (returned when getting a cell from …
14:42 Changeset [1314] by work@…
- fixed descriptions for Sample and Subject, see #246
14:14 Ticket #246 (Term not found in subject.species ontology chooser) closed by work@…
wontfix: NEWT does not exist in the NCBO Bioportal, so it is currently not …
14:08 Changeset [1313] by t.w.abma@…
- removed URL-encoding of encrypted "importable entities"
13:43 Changeset [1312] by work@…
- removed debug line
13:39 Changeset [1311] by t.w.abma@…
- removed parent-setters from saveDatamatrix-method in ImporterService? - …
09:57 Ticket #246 (Term not found in subject.species ontology chooser) created by robert@…
I want to add a subject with species 'groundwater metagenome'. This is a …

21-12-10:

16:45 Changeset [1310] by work@…
- title is not required for clicking on tabs
16:42 Changeset [1309] by work@…
- adding feature #208, clickable breadcrumbs / tabs as subtask of #183
15:28 Ticket #245 (Add spinner or 'please wait' when waiting for ajax calls in create study ...) created by robert@…
When the create study wizard loads some page using ajax, the user is left …
15:27 Changeset [1308] by work@…
- fixing sub-task #209 (of #183)
15:09 Changeset [1307] by work@…
- updated ajaxflow to 0.1.9 (fix camelCase ajaxflow issues)
14:35 Changeset [1306] by work@…
- crypto shared secret is now randomly generated on application startup
14:22 Changeset [1305] by t.w.abma@…
- fixed minor bugs in the import wizard introduced by rewritten …
14:21 Changeset [1304] by work@…
- and redirecting into studyWizard instead of studywizard (views)
14:18 Changeset [1303] by work@…
and to final destination
14:17 Changeset [1302] by work@…
temp move of template
14:08 Changeset [1301] by work@…
- upgraded grom to 0.2.1 - enabled debug loglevel for debugging ci issues
12:59 Changeset [1300] by work@…
- intellij marks this file red because of 'error()' in a comment
12:40 Changeset [1299] by work@…
- buildinfo class conflicted with info class in study wizard
12:32 Changeset [1298] by work@…
- disabled debug and info loglevels for debugging ci instance
12:25 Changeset [1297] by work@…
- enabled debug and info loglevels for debugging ci instance
12:12 Ticket #244 (Importer error after first step) created by business@…
After trying to import a sample sheet: 2010-12-21 12:08:17,675 …
11:58 Changeset [1296] by t.w.abma@…
- fixed JS-reference
11:04 Changeset [1295] by robert@…
Making it possible to search on pubmed ID (#212)
10:40 Ticket #243 (Application shows multiple languages mixed up) created by robert@…
When you use a Dutch browser (or Dutch OS, I'm not really sure), a part of …
01:28 Changeset [1294] by work@…
- commented triggerevent for testing
01:16 Changeset [1293] by work@…
- uncommented triggerevent for testing
00:44 Changeset [1292] by work@…
- removed some obsolete debug printlns
00:37 Changeset [1291] by work@…
and two
00:37 Changeset [1290] by work@…
grr, again... temp commit 1
00:34 Changeset [1289] by work@…
temp rename commit 2
00:33 Changeset [1288] by work@…
temp rename commit 1
00:20 Changeset [1287] by work@…
- removing obsolete wizard views
00:04 Changeset [1286] by work@…
- BIG refactoring / rewrite of the wizard to use the ajaxflow plugin, part …

20-12-10:

17:40 Ticket #242 (Incorrect error when not adding a sampling event) closed by work@…
wontfix: True, but that is by design as the error has been added to the Dutch i18n …
17:36 Ticket #206 (Create Study fails when using non-standard Assay) closed by work@…
wontfix: Apparently, somehow the template editor inserted a 'null' field for some …
16:28 Changeset [1285] by work@…
- resolved #242, incorrect error messages. Also moved the messages …
15:48 Changeset [1284] by work@…
- resolves issue #241
15:47 Ticket #242 (Incorrect error when not adding a sampling event) created by robert@…
When creating a study, an error appears when no events are created: "In …
15:33 Ticket #241 (validation of study instance show old error massages) created by work@…
This new issue is relate to #233. It is actually caused by …
15:01 Changeset [1283] by work@…
- added comment
15:00 Changeset [1282] by work@…
resolves #210, added possibility to duplicate events
14:28 Ticket #240 (Improve study page of study-create-wizard) created by robert@…
It would be great to improve the study page (first page) of the …
12:20 Ticket #62 (importing subjects without the species gives a message too late) closed by business@…
fixed: Fixed now with ontology validate
12:10 Ticket #205 (Easier renaming of subjects in study creation wizard) closed by business@…
wontfix: See #239.
12:09 Ticket #239 (Integrate Excel importer into the wizard) created by business@…
Integrate Excel importer into each step of the study wizard
12:03 Ticket #169 (log in for view studies) closed by business@…
fixed: Login is visible now
09:51 Ticket #233 ("NTC Study" template on CI instance contains required fields that are not ...) closed by business@…
fixed: Works fine as far as I have tested it! The code has a lot of duplication, …
09:47 Ticket #76 (update ontology descriptors + exchange templates via XML or RDF) closed by business@…
fixed: Tested, works fine!
09:43 Ticket #68 (selecting multiple subjects in 5. Groups would be useful) closed by business@…
fixed: Now this is possible.
09:43 Ticket #40 (attemt to save study gives error message) closed by business@…
worksforme: Fixed (see #50).
09:42 Ticket #35 (deleted groups in even template show up again after saving) closed by business@…
fixed: Fixed.
09:41 Ticket #33 (simple import wizard, import subects gives some problems) closed by business@…
fixed: These issues are resolved now.
09:41 Ticket #30 (edit study results in duplicate fields, and deleted fields do not get ...) closed by business@…
fixed: This is now resolved.
09:40 Ticket #29 (Searchable gives NumberFormatException, does not return correct search ...) closed by business@…
wontfix: Closing this issue as the current code doesn't give this error anymore.
08:38 Ticket #182 (Implement the import wizard as a webflow) closed by t.w.abma@…
fixed: Chose to rewrite into Ajaxflow already last week, adds some more …

16-12-10:

18:45 Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
wontfix: most likely duplicate to #187... closing this now, I know this issue has …
18:36 Ticket #238 (Strange error message 0 errors in ontology popup) reopened by business@…
It happens on demo.dbnp.org, for example in the species dropdown: Oops! …
16:08 Changeset [1281] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, added common pages
15:46 Changeset [1280] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow, deleted old files
15:44 Changeset [1279] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:43 Changeset [1278] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:42 Changeset [1277] by t.w.abma@…
- rewrite of the Importer Wizard into an Ajaxflow
15:22 Ticket #228 (Date field in study capture wizard causes an exception) closed by work@…
worksforme: tried it with chrome, safari and firefox, cannot reproduce…
15:19 Ticket #238 (Strange error message 0 errors in ontology popup) closed by work@…
worksforme: cannot reproduce…
15:16 Changeset [1276] by work@…
- change z-index for toppannel so it's always on top of everything (set to …
14:52 Changeset [1275] by work@…
- updated project to Grails 1.3.6, release notes: …
05:00 Ticket #238 (Strange error message 0 errors in ontology popup) created by business@…
When you click add more... on an ontology field, you get an annoying …

15-12-10:

13:53 Changeset [1274] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:47 Changeset [1273] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:44 Changeset [1272] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:36 Changeset [1271] by robert@…
Trying to solve a bug that only appears on ci, not locally, in importing …
13:32 Changeset [1270] by robert@…
Bugfix in importing templates (ticket #76)
13:20 Changeset [1269] by robert@…
Fixed bug in importing templates without any fields and improved views …
13:17 Changeset [1268] by work@…
- new facebook like image - new favicon
12:44 Ticket #231 (timeline doesn't appear after visiting other tabs) closed by robert@…
fixed: Solved in r1266. The timeline is now loaded when opening the show-study …
12:42 Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) closed by robert@…
fixed: Fixed in r1266. Make sure to always use the trick on …
12:41 Ticket #232 (facebook link breaks menu in IE7) closed by robert@…
fixed: Fixed in r1266 by improving the z-index values of different elements.
12:40 Changeset [1267] by work@…
Automated continuous integration commit of minified JS/CSS
12:40 Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) closed by robert@…
fixed: Both problems have been solved in r1266.
12:39 Changeset [1266] by robert@…
Fixed several IE7 bugs. See tickets #231, #232, #234 and #237

14-12-10:

18:06 Changeset [1265] by work@…
- changing z-indexes of navigation and facebook like to see if issue #232
17:44 Changeset [1264] by work@…
resolves issue #233, validation of an object which inherits from …
16:20 Ticket #237 (List in importer wizard (step3) doesn't work well in IE7) created by robert@…
I've been trying to import an excel sheet using IE7. Most steps work fine, …
16:04 Ticket #236 (Template editor can't be opened from importer wizard) created by robert@…
When I go to the importer wizard on the ci-instance …

13-12-10:

20:29 Changeset [1263] by robert@…
- Solved bug in exporting templates with null values - Solved bug in …
15:18 Ticket #235 (Retrieving publications from pubmed can't handle non-ascii characters) created by robert@…
In the study wizard, it is possible to look up a publication on pubmed. …
14:49 Ticket #234 (titles in create study wizard (subjects and events) are not shown in IE7) created by robert@…
When I go to the study create wizard, to the step 'subjects' or 'events', …
12:10 Changeset [1262] by s.h.sikkema@…
Added assays link in topnav
11:50 Changeset [1261] by s.h.sikkema@…
Changed jumbar layout to simple iframe for modules

10-12-10:

15:37 Ticket #233 ("NTC Study" template on CI instance contains required fields that are not ...) created by work@…
These fields are marked properly with the arrow in the study page of the …
15:12 Changeset [1260] by work@…
- resolves #198, user friendly error messages in wizard
15:11 Ticket #229 (Implement 'before close' in dialog popups (ontology chooser, template ...) closed by work@…
duplicate: duplicate of #230
13:39 Ticket #232 (facebook link breaks menu in IE7) created by robert@…
If I open a menu in IE7 (e.g. Studies), I can only select the topmost 2 …
11:24 Changeset [1259] by work@…
- getAllErrors.join will break your application as getAllErrors is a …
10:45 Changeset [1258] by work@…
- updated image

09-12-10:

21:12 Changeset [1257] by robert@…
Added an export and import functionality for templates, as described in …
18:07 Changeset [1256] by work@…
- 0.6.1 has been long overdue. Updating to 0.6.1 even though #140 has not …
17:49 Changeset [1255] by work@…
- fixed an issue with the automated database upgrade where the idx's …
17:04 Changeset [1254] by work@…
- fixed null issue in study view
17:00 Changeset [1253] by work@…
- fixed null issue in study view
16:38 Changeset [1252] by work@…
- fixed null issue in study view
16:23 Changeset [1251] by work@…
- template_template_field references needed to be removed as well
16:18 Changeset [1250] by work@…
- set keyword expansion
16:17 Changeset [1249] by work@…
- finalizing database upgrade script with delete statements
16:12 Changeset [1248] by work@…
- testing database upgrade on ci
15:47 Changeset [1247] by work@…
- adding initial version of automatic database upgrade script
15:11 Changeset [1246] by work@…
- made description a required field
14:51 Changeset [1245] by work@…
- moved 'description' from study template fields into domain variables so …
14:24 Changeset [1244] by work@…
- as description is a template field and hence may not exist in a study …
14:12 Changeset [1243] by work@…
- added open graph description tag
13:58 Changeset [1242] by work@…
- added Facebook open graph tags - added Facebook like button to front …
13:26 Changeset [1241] by work@…
- added Facebook like support
11:36 Changeset [1240] by work@…
- small bugfix in ajaxflow af:flow tag, upgrading ajaxflow to 0.1.8

08-12-10:

15:44 Changeset [1239] by work@…
- upgrading ajaxflow plugin to 0.1.7

07-12-10:

16:32 Ticket #231 (timeline doesn't appear after visiting other tabs) created by robert@…
The timeline in a study overview doesn't show after you've clicked on …

06-12-10:

15:12 Ticket #230 (Implement 'before close' in dialog popups (ontology chooser, template ...) created by work@…
Closing a dialogue does not 'add' a term or 'save' the template. Perhaps, …
15:12 Ticket #229 (Implement 'before close' in dialog popups (ontology chooser, template ...) created by s.h.sikkema@…
Closing a dialogue does not 'add' a term or 'save' the template. Perhaps, …
14:53 Ticket #228 (Date field in study capture wizard causes an exception) created by s.h.sikkema@…
When you manually enter the date, an exception is thrown in the terminal
14:27 Changeset [1238] by work@…
- ajaxflow to 0.1.6

03-12-10:

11:31 Changeset [1237] by work@…
- renamed ajax-flow to ajaxflow
11:29 Ticket #227 (Searchable gives marshal error) created by business@…
To reproduce the marshaling error, revert [1170] and create a study with …
10:56 Ticket #103 (input wizard) closed by business@…
worksforme: We haven't had a concrete example of such an Excel import sheet. So …
10:54 Ticket #226 (Template ownership) created by business@…
In the data model, there is currently a 'owner' slot for a Template. …
10:36 Ticket #141 (Explain prefix for creating contacts) closed by robert@…
fixed: Added in r1236
10:34 Changeset [1236] by robert@…
Added hint at 'prefix' field for contacts (#141) and changed …
10:21 Ticket #69 (button to save new template field not easy to find) closed by robert@…
wontfix: Sometimes if you open a form you have to scroll down to see all of it. …
09:32 Ticket #172 (tables of templates are not correctly shown in IE) closed by work@…
fixed: As far as I know, this has already been resolved at the same day that this …
09:26 Ticket #84 (add ontologies chooser to template editor) closed by business@…
fixed: Confirmed fixed.
09:25 Ticket #74 (changing template fields impossible) closed by business@…
fixed: This works now as expected!
09:24 Ticket #70 (correcting feedback internetexplorer ) closed by business@…
fixed: Tested this in IE 8, but it is reasonably fast and clicking 'next' …
09:13 Ticket #110 (Input of assays) closed by business@…
fixed: Done.
09:12 Ticket #213 (Exception in saving step of wizard) closed by business@…
fixed: This was very likely a duplicate of #223. Assuming fixed.
09:11 Ticket #223 (Deleting a subject which has samples causes problems at the event stage) closed by business@…
fixed: Apparently fixed. (NB use business@...)
09:00 Ticket #225 (Rewrite #2 : rewrite template model (+template editor + tags) into a ...) created by work@…
The generic parts of the study capture wizard to create ajaxified webflows …

02-12-10:

19:28 Changeset [1235] by work@…
- updated ajax-flow plugin to 0.1.4
18:55 Changeset [1234] by work@…
- disabled build info layer in development
18:03 Changeset [1233] by work@…
- introduced deleteSample method to be sure a sample -and it's relations- …
16:48 Ticket #66 (view subject lacks units) closed by business@…
worksforme: I see. Probably a copy function would be the most desirable option then, …
16:47 Ticket #224 (Excel exporter - study overview) created by business@…
Besides the Excel exporter for assay data (#159) it would also be very …
15:55 Changeset [1232] by work@…
- ajax-flow to 0.1.2
15:19 Ticket #214 (Enable/Disable all import column mappings) closed by m.s.vanvliet@…
fixed: It now is able to reset all import headers. Works for me! Thanks
14:53 Ticket #201 (Study deletion does not work) closed by business@…
fixed: Works fine.
14:46 Ticket #72 (view timeline / table) closed by business@…
fixed: The timeline view looks much better and tidier now! This is great!
14:41 Ticket #67 (subject order differs between view and edit ) closed by business@…
fixed: Perfect!
14:19 Ticket #147 (Edit study wizard doesn't work anymore) closed by business@…
worksforme: Tjeerd also could not reproduce this issue anymore. So closing this.
13:52 AjaxFlow created by work@…
13:44 Ticket #16 (viewc event timeline image strange / incomplete) closed by business@…
fixed
13:31 Changeset [1231] by t.w.abma@…
- button to clear column mappings selectboxes, added to step 2 in the …

01-12-10:

13:17 Ticket #220 (timeline missing in nmcdsp test instance) closed by robert@…
worksforme: Can reproduce the problem in firefox, ie7, ie8 or safari.
11:50 Changeset [1230] by work@…
- extended build info width by 50 pixels
11:46 Changeset [1229] by work@…
- enabeling bootstrap for dbnpdemo - extended build info width by 50 …

30-11-10:

18:21 Ticket #203 (As of 18 november the Chebi Ontology (1007) fails) closed by work@…
fixed: Morris Schwertz has fixed Ontocat, included the latest version (0.9.6.1) …
18:20 Changeset [1228] by work@…
- resolved issue #203
18:15 Ticket #155 ('Show Studies' page needs to be re-developed) closed by work@…
fixed: Thanks Robert, closing this issue…
18:04 Ticket #207 (Administrator cannot see all studies) closed by work@…
fixed: It seems to work well on ci... closing the issue.
17:59 Changeset [1227] by work@…
- improved in-code comment
17:41 Changeset [1226] by work@…
- issue #147 and issue #223 were resolved in changelist 1225, which means …
17:37 Ticket #147 (Edit study wizard doesn't work anymore) reopened by work@…
17:26 Changeset [1225] by work@…
- resolved issue #223
17:12 Changeset [1224] by robert@…
Fixed issue in study overview with double columns. See ticket #155
15:56 Changeset [1223] by t.w.abma@…
- improved error messaging in the last step of the wizard
15:48 Ticket #221 (Column numbers fail to import) reopened by business@…
Great, that explains it. It would however be nice if either some kind of …
15:37 Ticket #221 (Column numbers fail to import) closed by t.w.abma@…
fixed: Light intensity numbers should be numeric before the importer can parse it …
14:10 Changeset [1222] by robert@…
Implemented improved authorisation to give administrators all permissions …
13:47 Ticket #223 (Deleting a subject which has samples causes problems at the event stage) created by business@…
Steps to reproduce: 1. Go to test.nmcdsp.org and login as user 2. Edit …
13:37 Ticket #222 (Delete subject in IE didn't work one time) closed by business@…
invalid
13:37 Ticket #222 (Delete subject in IE didn't work one time) created by business@…
Today at the demo at WUR I was unable to delete a subject in IE 8, however …
13:30 Changeset [1221] by work@…
- improved build header
11:39 Ticket #221 (Column numbers fail to import) created by business@…
In the test.nmcdsp.org instance, user 'user', study 123.example, the …
11:31 Ticket #220 (timeline missing in nmcdsp test instance) created by business@…
On test.nmcdsp.org, example study in account 'user', no timeline is …
10:57 Ticket #218 (SimpleTox exporter gives error) closed by adem.bilican@…
fixed: resolved in revision 1220. It was a bug due to the parentSubject attribut.
10:53 Changeset [1220] by adem.bilican@…
error in the SimpleTox? exporter for parentSubject attribut
10:50 Changeset [1219] by adem.bilican@…
error in the SimpleTox? exporter for parentSubject attribut
10:45 Changeset [1218] by adem.bilican@…
error in the SimpleTox? exporter
10:40 Changeset [1217] by adem.bilican@…
error in the SimpleTox? exporter
09:37 Changeset [1216] by t.w.abma@…
- step 3 (mapping properties) added simple error message telling what went …
09:28 Changeset [1215] by t.w.abma@…
- step 3 (mapping properties) now requires all fields to be valid before …
Note: See TracTimeline for information about the timeline view.