Timeline


and

Nov 26, 2010:

7:18 PM Changeset [1209] by work@…
- ajax-flow plugin version 0.1.1
6:36 PM Changeset [1208] by work@…
- obsolete import in sanbox controller broke gscf - added ajax-flow …
1:02 PM Changeset [1207] by t.w.abma@…
- added an initial simple overview in last step of import wizard …
12:33 PM Changeset [1206] by robert@…
Removed sorting of subjects in study page and added units to the …
12:08 PM Ticket #213 (Exception in saving step of wizard) created by guido.hooiveld@…
After creating and describing a new study in detail, and also …
11:42 AM Ticket #212 (search on PubMed ID) created by guido.hooiveld@…
in study page of the creator, plz add the option to also search on …
11:41 AM Ticket #211 (possiblity to connect to chemspider for compounds) created by guido.hooiveld@…
Some compounds (such as …
11:39 AM Ticket #210 (option to copy event template fields) created by guido.hooiveld@…
When editing e.g. an event in the study create/edit wizard, it would …
10:43 AM Changeset [1205] by t.w.abma@…
- removed obsolete code

Nov 25, 2010:

9:10 PM Milestone 0.5.1 completed
There are a number of annoying bugs that prevent users from being able …
5:33 PM Changeset [1204] by m.s.vanvliet@…
Syncs all samples for assays on load Pilot/Show?
5:26 PM Changeset [1203] by robert@…
Updated the events timeline in the study view, according to ticket #72
4:08 PM Ticket #49 (Import wizard, templatefield typecast error) closed by t.w.abma@…
Already solved a long while ago.
3:51 PM Changeset [1202] by t.w.abma@…
- removed extra step and implemented a failed cells check in step 3 …
3:09 PM Ticket #199 (enhance event table view) closed by business@…
fixed: Great work! The table looks much more clear now.
2:50 PM Ticket #209 (Label / reference of the study in wizard pages) created by m.s.vanvliet@…
When I'm in the wizard I can only see what study I'm in on the "Study" …
2:25 PM Ticket #112 (Input of study design using timeline) closed by business@…
worksforme: The timeline seems to work for our current users apart from minor …
2:11 PM Changeset [1201] by robert@…
Made the size of the subjects column in the events table overview …
1:56 PM Changeset [1200] by robert@…
Improved study overview of events according to ticket #199
12:51 PM Ticket #117 (Design interface for plugins) closed by j.saito@…
invalid: This is totally outdated. Can this be closed?
12:25 PM Ticket #179 (In template editor, add dropdown possibility of used fields) closed by business@…
fixed: This is fixed now. Thanks!
12:22 PM Ticket #195 (Regenerate samples in study edit wizard after editing events) closed by business@…
fixed: Thanks, Eugene and Jeroen, for working this out. It seems to me that …
10:56 AM Changeset [1199] by j.saito@…
Further streamlined CommunicationManager?. It now builds fetches its …

Nov 24, 2010:

5:21 PM Changeset [1198] by t.e.roos@…
Added workarounds for known template text fields bug
5:10 PM Changeset [1197] by business@…
deleted old clinical module stuff, don't know why it is still in…
1:57 PM Ticket #208 (Make breadcrumbs in study create/edit wizard clickable) created by business@…
It would be nice if the different breadcrumbs (1. Study, 2. Subjects …
11:47 AM Changeset [1196] by j.saito@…
Streamlined CommunicationManager? and adjusted it to suit …

Nov 23, 2010:

3:38 PM Ticket #200 (Error met import van Samples in DCL template) closed by m.s.vanvliet@…
fixed
3:32 PM Ticket #176 (Unable to map samples for Pilot) closed by m.s.vanvliet@…
fixed
2:07 PM Changeset [1195] by j.saito@…
Fixed bug. Someone called the wrong CommunicationManager? method.
1:59 PM Changeset [1194] by t.w.abma@…
- removed debug line
1:50 PM Changeset [1193] by t.w.abma@…
- refresh error when calling savePostview now really shouldn't popup …
1:34 PM Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) closed by e.vansomeren@…
fixed: It works perfect now on svn r1192, thanks!
12:37 PM Changeset [1192] by work@…
- looking into #187 which is reproducable on ci, but not on dev. …
12:15 PM Ticket #207 (Administrator cannot see all studies) created by work@…
I was looking into solving Eugene's issue #195 but I could not find …
11:17 AM Changeset [1191] by t.w.abma@…
- calling savePostview url directly gives a warning now that the files …
11:11 AM Ticket #171 (remove field from template) closed by robert@…
duplicate: Duplicate of #74, which has been fixed.
11:09 AM Ticket #206 (Create Study fails when using non-standard Assay) created by e.vansomeren@…
I've created an Assay Template called Microarray (and Microarray2). …
11:07 AM Ticket #181 (Delete study fails) closed by robert@…
duplicate: Duplicate of #201. Has been fixed already
10:38 AM Ticket #205 (Easier renaming of subjects in study creation wizard) created by e.vansomeren@…
Currently, it is a lot of work to manually rename each subjects name. …
10:15 AM Changeset [1190] by t.w.abma@…
- removed debugging info
10:11 AM Ticket #202 (When adding template fields, the order is not set correctly) closed by robert@…
fixed: This problem had the same cause as the first problem in ticket #14. …
10:11 AM Changeset [1189] by robert@…
Fixed ordering of template fields when adding a new field (see ticket #202)
10:10 AM Ticket #204 (After creation of new contacts study create wizard cannot continue) closed by e.vansomeren@…
invalid: I am currently unable to recreate the error. I will close it and …
10:01 AM Ticket #204 (After creation of new contacts study create wizard cannot continue) created by e.vansomeren@…
During creation of a new study, I wanted to add two contacts. Because …
9:47 AM Changeset [1188] by robert@…
Fixed deletion of studies (see ticket #201)
9:32 AM Ticket #180 (Improve navigation structure) closed by robert@…
fixed: Looks very nice. Closing this ticket

Nov 22, 2010:

7:19 PM Changeset [1187] by t.w.abma@…
- fixed transient and samples.name error (the latter was caused by …
7:12 PM Changeset [1186] by work@…
- added some more ontology fields to the demo page in the wizard to …
7:08 PM Changeset [1185] by work@…
Automated continuous integration commit of minified JS/CSS
7:07 PM Changeset [1184] by work@…
- extended the ontology chooser with copy / paste support. When you …
5:28 PM Changeset [1183] by work@…
Automated continuous integration commit of minified JS/CSS
5:27 PM Changeset [1182] by robert@…
Improved file upload fields so users can delete existing files and are …
5:06 PM Changeset [1181] by work@…
- resolved issue #180, added links to directly edit or view studies in …
4:33 PM Changeset [1180] by work@…
- enabling quicksave through the wizard since this controller was …
4:15 PM Ticket #170 (register for new account) closed by robert@…
fixed: This has been solved already. See ticket #188.
2:23 PM Ticket #193 (Entering too long text results in unrecognizable error) closed by e.vansomeren@…
fixed: Great, the error and subsequent red ! clearly indicates which field …
2:16 PM Ticket #139 (When importing only information about the study itself using simple ...) closed by e.vansomeren@…
fixed: Works fine, thanks!

Nov 19, 2010:

1:34 PM Changeset [1179] by work@…
- set other url's in the communication manager as well, not sure if …
1:19 PM Changeset [1178] by work@…
- this change is part of #185 - moved object instantes out of …
12:31 PM Changeset [1177] by work@…
- removed debug println
12:28 PM Ticket #203 (As of 18 november the Chebi Ontology (1007) fails) created by work@…
Today the BootStrapStudies? was breaking on Ontology 1007: Error: …
12:19 PM Changeset [1176] by work@…
- resolved issue #187 by refactoring the TermEditor? to support the …
11:51 AM Changeset [1175] by robert@…
The templateeditor is now capable of adding new items to a stringlist …
11:50 AM Ticket #202 (When adding template fields, the order is not set correctly) created by robert@…
- Add a new field to e.g. the academic study, as second field (after …
10:55 AM Changeset [1174] by work@…
As of 18 november the Chebi ontology has been updated to a new …

Nov 18, 2010:

4:31 PM Changeset [1173] by business@…
fix another typo which broke study edit wizard
4:27 PM Changeset [1172] by t.w.abma@…
- minor refresh fix
3:20 PM Changeset [1171] by t.w.abma@…
- added add / modify to date template chooser - added some JS to …
2:55 PM Ticket #154 (Enhance template editor template field type chooser) closed by work@…
fixed: Robert's change was in r1166 Closing issue…
2:51 PM Changeset [1170] by business@…
reverting the searchable property of Event, bug is still there and …
2:19 PM Ticket #196 (Error when viewing contacts) closed by business@…
fixed: Works fine now.
2:17 PM Ticket #128 (exception after defining a study, cannot save the study) closed by business@…
fixed: Ah, wait, I didn't see that you did not put parentEvent to nullable …
2:16 PM Changeset [1169] by business@…
fix for #128 - parentEvent is now nullable
1:37 PM Ticket #128 (exception after defining a study, cannot save the study) reopened by business@…
Actually, I have to reopen it, because when testing on [1168], the …
1:22 PM Ticket #201 (Study deletion does not work) created by business@…
If I click delete when viewing a study (study/show), I get to an error …
1:10 PM Changeset [1168] by business@…
fix typo which broke study create wizard
1:00 PM Ticket #128 (exception after defining a study, cannot save the study) closed by business@…
worksforme: In [1161], I still get an exception in a popup after trying to save …
12:36 PM Ticket #129 (Javascript error) closed by business@…
worksforme: Yes, now it works for me too. Probably a glitch.
12:31 PM Ticket #165 (Ability to change user password) closed by business@…
fixed: Works fine now!
12:13 PM Changeset [1167] by robert@…
Added a check for string template fields, because they can not exceed …
11:26 AM Changeset [1166] by robert@…
Removed INTEGER/FLOAT templates from template editor and changed the …
11:21 AM Changeset [1165] by t.w.abma@…
- removed INTEGER/FLOAT support in the Import Wizard controller and …
10:14 AM Ticket #154 (Enhance template editor template field type chooser) reopened by work@…
Indeed a logical change, but INTEGER and FLOAT are not just in …
10:10 AM Changeset [1164] by t.w.abma@…
- removed INTEGER/FLOAT support in the Import Wizard and replaced them …
9:56 AM Ticket #200 (Error met import van Samples in DCL template) created by m.s.vanvliet@…
2010-11-18 09:42:34,978 [http-8080-1] ERROR …
9:35 AM Changeset [1163] by m.s.vanvliet@…
Wrong port + URL for metabolomics module was set in Bootstrap. Changed …

Nov 17, 2010:

6:18 PM Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) closed by work@…
duplicate: duplicate of #185, closing…
6:05 PM Changeset [1162] by work@…
- resolves improvement #1, generating an assay id suggestion in the …
5:33 PM Changeset [1161] by work@…
- tried to reproduce issue #128 but it seems resolved, leaving …
5:31 PM Ticket #154 (Enhance template editor template field type chooser) closed by business@…
fixed: Great! I had to run the following query in the CI database to avoid …
5:26 PM Ticket #199 (enhance event table view) created by business@…
In the study overview, the events table can get quite cluttered up, …
4:23 PM Changeset [1160] by robert@…
Removed printlns that were added for debugging
4:20 PM Changeset [1159] by robert@…
Improved the template editor so that template fields can be removed …
2:32 PM Changeset [1158] by work@…
Automated continuous integration commit of minified JS/CSS
2:31 PM Changeset [1157] by robert@…
Removed unnecessary REST call from term editor
2:31 PM Changeset [1156] by robert@…
Updated ontology chooser to also return an NCBO id when no NCBO id is …
2:12 PM Changeset [1155] by work@…
- resolving issue #195, sample generation madness. This was partly …
12:07 PM Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) closed by work@…
fixed: setup trunk/tags/branches for each nmcdsp plugin in the grails-plugins …
11:52 AM Changeset [1154] by robert@…
Fixed exception when viewing the list of persons. See ticket #196.
11:34 AM Changeset [1153] by robert@…
Removed template field types INTEGER and FLOAT (since LONG and DOUBLE …
11:31 AM Ticket #198 (Error messages in study wizard should be more user friendly) created by robert@…
When you create or edit a study, and you fill in a wrong value for a …
10:45 AM Changeset [1152] by robert@…
Changed flash.error to flash.userError in the authentication part to …
10:44 AM Ticket #197 (User creation / approval process breaks the study wizard) closed by robert@…
fixed: I've changed it to flash.userError instead of flash.error. It's …

Nov 16, 2010:

8:34 PM Changeset [1151] by work@…
- removed my email address to prevent spambot hell
6:57 PM Ticket #99 (in study create wizard, after adding a number of species, the choices ...) closed by work@…
worksforme: cannot reproduce... is probably already fixed
6:56 PM Ticket #94 (re-layout study create wizard, info boxes should stand out more and ...) closed by work@…
wontfix: I'm not sure if this feedback is valid anymore as it is months old... …
6:48 PM Changeset [1150] by work@…
- resolves issue #180
6:30 PM Changeset [1149] by work@…
- resolving issue #197 where the study wizard breaks is flash.errors …
6:27 PM Ticket #197 (User creation / approval process breaks the study wizard) created by work@…
Since #188 and #189 have been implemented, the account creation …
5:50 PM Ticket #189 (Clean up unvalidated accounts & account creation) closed by work@…
fixed: Tested it except for the 3 days timeout and had a look at the change ( …
5:40 PM Ticket #188 (Implement rfc 2822 compliant email validation) closed by work@…
fixed: Yeah you're right, and it seems to work okay as well.. closing this issue.
4:47 PM Changeset [1148] by t.w.abma@…
- multiselect and add/remove added, only entity needs to be passed (todo)
3:47 PM Changeset [1147] by robert@…
Resolved exception with the RegisterCommand?
3:18 PM Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) closed by business@…
fixed: Cool! Added larger column width for sample names in [1146]. This …
3:16 PM Changeset [1146] by business@…
enlarge column width for sample name in study create/edit wizard
3:13 PM Changeset [1145] by work@…
- grom 0.2.0 has been published to the Grails repo, yay! Upgrading to …
2:57 PM Changeset [1144] by robert@…
Added an expiry date to the confirmation email for the user and …
2:39 PM Ticket #147 (Edit study wizard doesn't work anymore) closed by business@…
worksforme: Works again thanks to reverting to 1.3.4.
2:26 PM Ticket #196 (Error when viewing contacts) created by business@…
Choosing contacts > view persons in the menu …
2:24 PM Ticket #190 (Create Study seems to fail when saving, but reclicking next works) closed by business@…
duplicate: This is most likely a duplicate of #193.
2:14 PM Ticket #194 (Missing Samples in Create Study Wizard) closed by business@…
duplicate
1:22 PM Ticket #195 (Regenerate samples in study edit wizard after editing events) created by business@…
When someone edits a study in the study edit wizard, changing sampling …
11:47 AM Changeset [1143] by t.w.abma@…
- import wizard: fuzzy matching for column properties (step 2) implemented
10:43 AM Changeset [1142] by t.w.abma@…
- "go back" link not shown in the last step of the wizard, if no …
10:23 AM Ticket #194 (Missing Samples in Create Study Wizard) created by e.vansomeren@…
When creating a new study with the wizard, step 5 does not work …

Nov 15, 2010:

11:56 PM Ticket #193 (Entering too long text results in unrecognizable error) created by e.vansomeren@…
While editing a study, I tried to fill in a study description that …
11:10 PM Changeset [1141] by t.w.abma@…
- added fuzzy matching to importer tag library
8:25 PM Changeset [1140] by t.w.abma@…
- added ability to add new ontologies in the "missing properties" step
4:05 PM Ticket #192 (Add Datatype user-extendible String list (as in ontology)) created by e.vansomeren@…
For many fields, the data manager wants the user to try to select from …
3:57 PM Changeset [1139] by work@…
- fixed application.properties as it was committed with grails 1.3.5 …
2:33 PM Ticket #191 (Include searchable Xrefs in Ontology terms (bv CAS for CHEBI)) created by e.vansomeren@…
CAS nr are a commonly used ID for compounds. So when looking for a …
1:36 PM Changeset [1138] by robert@…
Implemented ability to changed password and email address when logged …
12:52 PM Changeset [1137] by t.w.abma@…
- missing properties added Add ontology…
11:51 AM Ticket #190 (Create Study seems to fail when saving, but reclicking next works) created by e.vansomeren@…
When creating a study, I get this error when it tries to save …
11:44 AM Ticket #189 (Clean up unvalidated accounts & account creation) created by work@…
Currently, accounts need to be validated by clicking a confirmation …
11:35 AM Ticket #188 (Implement rfc 2822 compliant email validation) created by work@…
Currently, email fields are not being checked throughout the …
11:22 AM Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) created by e.vansomeren@…
During study creation, I created subjects of Rat template. This …
11:06 AM Changeset [1136] by robert@…
Improved template editor to show field details when a field is …
10:54 AM Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) created by business@…
10:51 AM Ticket #185 (Set up an initial version of the 'getting started' wizard) created by work@…
Set up a 'getting started' wizard. On a clean installation of gscf the …
10:44 AM Ticket #184 (Unify GSCF module-side client with Michael) created by business@…
10:33 AM Ticket #183 (Rewrite #1 : rewrite ajaxified web flows into plugin) created by work@…
Ajaxified web flows are now being used among projects, which makes …
10:31 AM Ticket #182 (Implement the import wizard as a webflow) created by business@…
Stabilize
10:23 AM Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) closed by business@…
fixed
8:45 AM Ticket #181 (Delete study fails) created by e.vansomeren@…
When I try to delete a previously imported study, I get the message …

Nov 12, 2010:

6:08 PM Changeset [1135] by work@…
- updated dbnp vhosts -This line, and those below, will be ignored-- …
6:05 PM Changeset [1134] by work@…
- check voor dbnpdemo instead of demo
3:51 PM Changeset [1133] by work@…
- it looks like an environment may not contain dashes?
3:31 PM Changeset [1132] by work@…
adding dbnp apache vhost configuration
3:31 PM Ticket #140 (Error when importing studies that have values that do not match a ...) reopened by business@…
Actually there are still a number of things to be dealt with: * Right …
3:31 PM Changeset [1131] by work@…
removed obsolete files
3:10 PM Changeset [1130] by work@…
- changed nbx test and demo configurations to reflect dbnp.org domain names
3:01 PM Ticket #180 (Improve navigation structure) created by business@…
Right now, the navigation structure for editing/viewing/importing …
2:59 PM Changeset [1129] by work@…
- changed nbx test and demo configurations to reflect dbnp.org domain names
2:54 PM Ticket #179 (In template editor, add dropdown possibility of used fields) created by business@…
In the template editor (fields overview), when field on the right are …
1:29 PM Changeset [1128] by work@…
- added demo instance introduction page
12:11 PM Changeset [1127] by work@…
- added demo configuration
12:08 PM Changeset [1126] by t.w.abma@…
- initial fuzzy logic incorporated in Importer service

Nov 11, 2010:

4:22 PM Ticket #178 (saveCorrectedCells breaks when importing a simple 3 column excel doc.) created by m.s.vanvliet@…
Grails Runtime Exception Error Details Error 500: Executing action …
4:05 PM Changeset [1125] by business@…
fix to avoid error message when trying to compare templates when none …
2:59 PM Changeset [1124] by work@…
- improved deploy script
2:55 PM Changeset [1123] by work@…
- tiny word change
2:53 PM Changeset [1122] by t.w.abma@…
- preview fixed (sometimes didn't show all values read from Excel), …
2:29 PM Changeset [1121] by t.w.abma@…
- rewrote part of the importer and added a ImportRecord? and ImportCell?
1:58 PM Changeset [1120] by work@…
- fixing springSecurityService issue in static methods
1:39 PM Changeset [1119] by work@…
- initial version of the setup assistant
12:18 PM Changeset [1118] by work@…
- cleaned up the Bootstrap

Nov 10, 2010:

5:13 PM Changeset [1117] by work@…
test.nmcdsp.org and ci.nmcdsp.org now also work and point to their …
12:50 PM Changeset [1116] by work@…
Tagging the 0.6.0 release of gscf.
12:47 PM Changeset [1115] by work@…
- finalized source to 0.6.0
12:30 PM Changeset [1114] by work@…
- added nbx14 config, we need a better solution to support multiple …
10:33 AM Changeset [1113] by work@…
some fixes / improvements in the deploy script
9:37 AM Changeset [1112] by adem.bilican@…
SimpleTox? exporter + ZIP file for multiple studies + error handling
9:35 AM Ticket #130 (SimpleTox exporter) closed by adem.bilican@…
fixed: Exporting as SimpleTox? works good : - EventGroup? properties missing …
12:25 AM Ticket #177 (Integrate importer into create study wizard) created by business@…
The importer should be integrated (via a popup, or transparently as …

Nov 9, 2010:

8:21 PM Ticket #175 (Move oauth plugin to grails plugins project) closed by t.w.abma@…
fixed: Moved.
7:01 PM Changeset [1111] by work@…
- removing debug lines that template field values are being set…
6:53 PM Changeset [1110] by work@…
- bootstrapping tried to insert duplicate ontologies…
6:37 PM Changeset [1109] by work@…
- instantiating messages are gone
6:35 PM Changeset [1108] by work@…
- instantiating messages go to debug loglevel
6:12 PM Changeset [1107] by work@…
- changed SAM url configuration - guys, bootstrap is a terrible …
2:55 PM Changeset [1106] by work@…
- added environments used by build scripts (e.g. ci, test and www)
1:39 PM Ticket #176 (Unable to map samples for Pilot) reopened by t.w.abma@…
1:38 PM Ticket #176 (Unable to map samples for Pilot) closed by t.w.abma@…
worksforme: Tested it again here, but I cannot reproduce it here. If I have an …
12:55 PM Changeset [1105] by work@…
- refactored ci script to allow other (test, www) deployments - …
12:51 PM Changeset [1104] by work@…
revised virtual host configuration
10:19 AM Ticket #140 (Error when importing studies that have values that do not match a ...) closed by t.w.abma@…
worksforme: Owner permission check was already there, but now when a Study is …
10:14 AM Changeset [1103] by t.w.abma@…
- added error page for importer - empty ontologies detected in Excel …
9:52 AM ScenarioEugene edited by e.vansomeren@…
(diff)
9:50 AM screenshot_SimpleImportWizard_UndeterminedOntologies.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? UndeterminedOntologies?
9:29 AM Changeset [1102] by business@…
fixed bug in confirmation step of wizard

Nov 8, 2010:

5:10 PM Changeset [1101] by m.s.vanvliet@…
Fixed the getSamples REST function. When with a sampleToken it …
4:20 PM Ticket #176 (Unable to map samples for Pilot) created by m.s.vanvliet@…
When trying to map samples via an import I get this: …
3:34 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:27 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:24 PM screenshot_SimpleImportWizard_PropertiesColumns_deel2.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? Properties/Columns? deel2
3:24 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:19 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:18 PM screenshot_SimpleImportWizard_PropertiesColumns.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? Properties/Columns?
3:17 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:12 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:10 PM screenshot_SimpleImportWizard_SelectFile.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? SelectingFile?
3:09 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:02 PM ScenarioEugene edited by e.vansomeren@…
(diff)
3:00 PM ScenarioEugene edited by e.vansomeren@…
(diff)
2:56 PM ScenarioEugene edited by e.vansomeren@…
(diff)
2:56 PM ScenarioEugene edited by e.vansomeren@…
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2:55 PM ScenarioEugene edited by e.vansomeren@…
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2:53 PM ScenarioEugene edited by e.vansomeren@…
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2:51 PM ScenarioEugene edited by e.vansomeren@…
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2:34 PM ScenarioEugene edited by e.vansomeren@…
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2:20 PM screenshot_NTC_Experiment_test3_deel3.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part3, only right-most columns)
2:19 PM screenshot_NTC_Experiment_test3_deel2.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part2, only mid columns)
2:19 PM screenshot_NTC_Experiment_test3_deel1.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part1, only left-most columns)
2:07 PM ScenarioEugene edited by e.vansomeren@…
(diff)
2:05 PM screenshot_NTCexptest3.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (only left-most columns)
1:59 PM NTC_Experiment_test3.xls attached to ScenarioEugene by e.vansomeren@…
Three mock NTC studies (from NTC Sharing) that should be importabel
1:55 PM ScenarioEugene created by business@…
12:53 PM Changeset [1100] by s.h.sikkema@…
Fixed 401 error
12:26 PM Changeset [1099] by s.h.sikkema@…
Authentication test
12:16 PM Changeset [1098] by s.h.sikkema@…
AuthenticationService? instantiated
12:08 PM Changeset [1097] by s.h.sikkema@…
A -> a
12:06 PM Changeset [1096] by s.h.sikkema@…
commented out authenticationservice in loadstudy method
10:59 AM Ticket #175 (Move oauth plugin to grails plugins project) created by business@…
10:57 AM Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) created by business@…
10:54 AM Ticket #173 (Update specification of REST methods from modules to GSCF back) created by business@…
10:23 AM Ticket #137 (Error when comparing two studies in v0.5.0) closed by business@…
fixed
10:23 AM Ticket #133 (Implement module assay jump functionality) closed by business@…
fixed
10:21 AM Ticket #132 (Create a study generator page) closed by business@…
fixed
10:17 AM Ticket #131 (add/modify REST method which allows for getting metadata multiple samples) closed by business@…
fixed
10:16 AM Ticket #57 (enhance REST services) closed by business@…
worksforme

Nov 7, 2010:

10:57 PM Changeset [1095] by j.saito@…
Added access to template fields of Event and Subject in getSamples …
10:08 PM Changeset [1094] by j.saito@…
Added TemplateFields? to be returned in getSamples REST resource.

Nov 6, 2010:

4:01 PM Changeset [1093] by t.w.abma@…
- failed cells correction now implemented in an extra step which …

Nov 5, 2010:

9:11 PM Milestone 0.6 completed
Full implementation of Authentication and Authorization. This is a …
9:02 PM Changeset [1092] by m.s.vanvliet@…
Pilot is user-aware adds a memu item Pilot
3:51 PM Changeset [1091] by work@…
- refactored and redesigned search page - bugfixed the build …
1:12 PM Changeset [1090] by s.h.sikkema@…
oops, introduced a typo, now fixed
1:11 PM Changeset [1089] by s.h.sikkema@…
added xbean.jar
12:59 PM Changeset [1088] by s.h.sikkema@…
Upgraded poi xml libs to 3.7
12:43 PM Ticket #136 (Search study data does not work in v0.5.0) closed by business@…
worksforme: This should be fixed now.
11:55 AM Changeset [1087] by s.h.sikkema@…
Added xlsx import functionality

Nov 4, 2010:

5:33 PM Ticket #172 (tables of templates are not correctly shown in IE) created by jildau.bouwman@…
tables that are generated at the subject, event and samples step of …
5:16 PM Changeset [1086] by work@…
- updated apache configuration
5:06 PM Ticket #171 (remove field from template) created by jildau.bouwman@…
Field cannot be removed from a template (even if the field is not used).
5:04 PM Changeset [1085] by work@…
- build info resized to the left
4:53 PM Changeset [1084] by work@…
- and another CSS fix
4:51 PM Ticket #170 (register for new account) created by jildau.bouwman@…
I created a new account, but used a none existing email-adres …
4:49 PM Changeset [1083] by t.w.abma@…
- added logic for cleaning up 'failed cells' in the imported datamatrix
4:46 PM Changeset [1082] by work@…
- IE CSS bugfix
4:37 PM Ticket #169 (log in for view studies) created by jildau.bouwman@…
If you come on the GSCF website in login field is very small. Choosing …
4:28 PM Changeset [1081] by work@…
- updated CI script to support new build information
4:03 PM Changeset [1080] by work@…
- created a generic info template showing build, deploy and uptime …
2:13 PM Changeset [1079] by work@…
- add check tomcat script
12:25 PM Changeset [1078] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
12:23 PM Changeset [1077] by robert@…
Resolved bugs in adding ontology-template-fields to a template. See …
12:00 PM Changeset [1076] by j.a.m.wesbeek@…
- removed grom from removed plugins…
11:58 AM Changeset [1075] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
11:35 AM Changeset [1074] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
11:34 AM Ticket #167 (Wizard sample page does not continue: Cannot invoke method ...) closed by work@…
fixed: Resolved in r1073, please retest on ci instance…
11:33 AM Changeset [1073] by j.a.m.wesbeek@…
- resolves issue #167
11:12 AM Ticket #164 (Exception in create wizard when creating assay but no samples) closed by work@…
duplicate: This issue was also reported as duplicate issue #167, as the latter …
10:59 AM Ticket #158 (Create a remote logout call) closed by m.s.vanvliet@…
fixed
10:55 AM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by m.s.vanvliet@…
fixed
9:42 AM Ticket #168 (Import Study fails at Step 5: 0 out of 3 rows imported succesfully) created by e.vansomeren@…
I've tried to import studies using a simple excel sheet (attached). At …
9:37 AM Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) closed by work@…
invalid: Eugene, never reopen a ticket which has been resolved unless you are …
9:36 AM Ticket #167 (Wizard sample page does not continue: Cannot invoke method ...) created by work@…
When creating a study in the wizard, the wizard doest not continue to …
9:26 AM Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) reopened by e.vansomeren@…
A very similar problem occurs again on http://gscf.nmcdsp.org/ the …
12:02 AM Changeset [1072] by j.a.m.wesbeek@…
- disabled plugin debugging, seems like the grom issues have been resolved

Nov 3, 2010:

11:54 PM Changeset [1071] by j.a.m.wesbeek@…
- updated grom plugin to 0.1.15, this should now work properly on …
8:29 PM Changeset [1070] by t.w.abma@…
- ' failed cells' page form with ontology chooser implemented
8:28 PM Changeset [1069] by work@…
- improved grom windows support - updated grom version to 0.1.14 - …
6:57 PM Changeset [1068] by j.a.m.wesbeek@…
- upgraded grom to 0.1.13 (improved growl for windows support)
5:57 PM Changeset [1067] by j.a.m.wesbeek@…
- authentication service was not defined in the loadStudy logic
5:31 PM Changeset [1066] by j.a.m.wesbeek@…
- initialize flash.errors in loadStudy logic
5:04 PM Changeset [1065] by business@…
changed page footer
4:58 PM Changeset [1064] by business@…
downgraded grails version to 1.3.4 to circumvent #147
4:53 PM Changeset [1063] by business@…
removed unnecessary text from home page in production version
4:30 PM Changeset [1062] by business@…
repaired menu item for Assay template editor
4:27 PM Changeset [1061] by business@…
updated ontology tests and deleted tests for REST methods that should …
4:25 PM Ticket #84 (add ontologies chooser to template editor) reopened by business@…
At this point somehow it doesn't work any more. If I want to add an …
3:53 PM Ticket #166 (Automatically match column names to template field names in importer) created by business@…
It would be nice if the importer automatically would match e.g. column …
3:40 PM Ticket #165 (Ability to change user password) created by business@…
Right now I get a password emailed by the registration process, but …
2:59 PM Changeset [1060] by t.w.abma@…
- updated POI library to 3.7 (2010-10-29 release) for handling Excel files
2:51 PM Changeset [1059] by t.w.abma@…
- only show own studies
2:26 PM Ticket #164 (Exception in create wizard when creating assay but no samples) created by business@…
When you specify no samples in the create study wizard, but you do add …
2:05 PM Ticket #163 (After Import Study Data the new studies are not visible) closed by t.w.abma@…
worksforme: This should really be fixed now, the authenticated user is assigned to …
2:03 PM Changeset [1058] by t.w.abma@…
- added failed cells view/logic - fixed Study-owner bug
1:58 PM Changeset [1057] by j.a.m.wesbeek@…
- upgraded grom to 0.1.12 (experimental windows support)
12:58 PM Changeset [1056] by robert@…
Changed template editor to be more user friendly with selecting field …
12:43 PM Ticket #163 (After Import Study Data the new studies are not visible) created by e.vansomeren@…
After importing study data GSCF says that x out of x rows/studies were …
11:45 AM Changeset [1055] by j.a.m.wesbeek@…
- reverted last dev commit…
11:43 AM Changeset [1054] by work@…
- fixed linux support - updated to 0.1.12
10:48 AM Changeset [1053] by robert@…
Fixed a bug in the remote logout call.
9:10 AM Changeset [1052] by adem.bilican@…
error on ExporterController?
8:48 AM Changeset [1051] by adem.bilican@…
error messages in ExporterController? for SimpleTox?

Nov 2, 2010:

4:48 PM Changeset [1050] by t.w.abma@…
- initial "failed cells" logic figured out, now extracts cells from …
3:41 PM Changeset [1049] by m.s.vanvliet@…
Pilot almost there…
2:13 PM Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) closed by work@…
fixed: I have refactored the plugin to not use gant/ant. Because native …
1:24 PM Changeset [1048] by j.a.m.wesbeek@…
- upgraded the grom plugin to 0.1.11, should fix the issues on tomcat
1:11 PM Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) created by business@…
Should be as easy as using this import: import …
1:06 PM Ticket #161 (GSCF Documentation) created by business@…
Write user documentation for GSCF, using a simple example study as guide.
11:15 AM Changeset [1047] by t.w.abma@…
- referer for now obtained via redirectTo param in the URL
11:01 AM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) reopened by m.s.vanvliet@…
The Referrer takes me back to STEP5 of the wizard... (before save), …
10:25 AM Changeset [1046] by m.s.vanvliet@…
Update NMC Pilot pages
9:42 AM Changeset [1045] by t.w.abma@…
- temporary removed addition of failed cells to when using …

Nov 1, 2010:

9:42 PM Changeset [1044] by t.w.abma@…
- added record which contains failed columns, should be passed to an …
6:37 PM Changeset [1043] by j.a.m.wesbeek@…
- packaging Gant in the plugin seems to work, however now ant is …
6:30 PM Changeset [1042] by j.a.m.wesbeek@…
- upgraded grom to 0.1.9 to see if this works on tomcat
6:13 PM Changeset [1041] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
6:11 PM Changeset [1040] by j.a.m.wesbeek@…
- made column widths changeable by adding: …
5:14 PM Ticket #135 ([wizard] All data is returned in a random order) closed by work@…
fixed: works for me…
5:10 PM Changeset [1039] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
5:05 PM Changeset [1038] by j.a.m.wesbeek@…
- removed todo from confirmation page
5:04 PM Ticket #153 (Improve confirmation page of wizard) closed by work@…
fixed: improved the confirmation page in r1037
5:03 PM Changeset [1037] by j.a.m.wesbeek@…
- fixed issue #153, improved the confirmation page (removed dummy …
4:49 PM Changeset [1036] by robert@…
Fixed the random order of templates in the study pages (#135) and …
4:38 PM Changeset [1035] by adem.bilican@…
SimpleTox? exporter with file downloading system
4:18 PM Ticket #150 (Implement Sample.parentEventGroup) closed by work@…
fixed: - implemented in svn revision r:1034
4:17 PM Changeset [1034] by j.a.m.wesbeek@…
- implemented improvement #150 ( https://trac.nbic.nl/gscf/ticket/150
4:14 PM Changeset [1033] by j.a.m.wesbeek@…
- developmental and administration menu items are now icons to save …
3:41 PM Changeset [1032] by j.a.m.wesbeek@…
- added the jquery-ui autocomplete html extention to the wizard
2:54 PM Changeset [1031] by robert@…
Bug in study comparison view fixed, so multiple studies can be compared
2:17 PM Changeset [1030] by robert@…
Extra check whether an owner has been added for a study, to prevent a …
1:17 PM Changeset [1029] by robert@…
Compare templates view updated.
12:48 PM Changeset [1028] by t.w.abma@…
- fixed NPE when empty cells were read from Excel and the property, …
12:42 PM Changeset [1027] by robert@…
Implemented compare templates feature and fixed show studies overview …
12:35 PM Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) created by work@…
On tomcat the plugin results in the following error: 2010-11-01 …
11:52 AM Changeset [1026] by j.a.m.wesbeek@…
- changed the CI script so that it works grails independently. This …
11:40 AM Changeset [1025] by j.a.m.wesbeek@…
- forgot to remove one .grom() call…
11:30 AM Changeset [1024] by j.a.m.wesbeek@…
- removed the String.grom() calls as grom is not stable on tomcat: …
11:28 AM Changeset [1023] by j.a.m.wesbeek@…
- uninstall grom in ci build as it currently is unstable on tomcat
11:21 AM Changeset [1022] by j.a.m.wesbeek@…
* grom 0.1.8
10:07 AM Ticket #63 (importing subjects twice does not add information to existing subjects ...) closed by t.w.abma@…
fixed: This should be fixed by now. There is being checked whether the entity …

Oct 29, 2010:

5:52 PM Changeset [1021] by j.a.m.wesbeek@…
- upgraded grom to 0.1.7
5:47 PM Changeset [1020] by j.a.m.wesbeek@…
- upgraded grom to 0.1.6
5:38 PM Changeset [1019] by j.a.m.wesbeek@…
- ci script should not remove the grom plugin as it extends the String …
5:34 PM Changeset [1018] by j.a.m.wesbeek@…
- upgraded grom plugin 0.1.5 as 0.1.4 breaks application on tomcat - …
12:56 PM Changeset [1017] by m.s.vanvliet@…
Fixed JSON Response of getAuthorizationLevel
12:48 PM Changeset [1016] by j.saito@…
Removed minor bug.
12:41 PM Changeset [1015] by j.a.m.wesbeek@…
- updating grom to 0.1.4 (Linux support)
11:15 AM Changeset [1014] by j.saito@…
Refactored AssayModule?.url to AssayModule?.consumer in all parts effected.

Oct 28, 2010:

8:05 PM Changeset [1013] by business@…
changed Ontology ncboId to unique, extended range of fulltext query
7:45 PM Changeset [1012] by j.a.m.wesbeek@…
- upgrading grom plugin to 1.1.3 - using String.grom() in bootstrap - …
5:16 PM Changeset [1011] by j.saito@…
Ticket #57. Unified getStudy and getStudies. Note: Could not get …
4:39 PM Changeset [1010] by j.saito@…
Ticket #57 - Unified getAssays and getAssay. Also, added convenience …
4:29 PM Ticket #159 (Excel exporter) created by business@…
We need to implement the querying functionality as specified in the …
3:48 PM Changeset [1009] by s.h.sikkema@…
now really fixed backlink for jumpbar link
3:07 PM Changeset [1008] by s.h.sikkema@…
Upped jumpbar version and fixed backlink for jumpbar link
2:15 PM Changeset [1007] by j.a.m.wesbeek@…
- updated existing vhosts to reflect changes in domain naming - added …
2:11 PM Ticket #158 (Create a remote logout call) created by m.s.vanvliet@…
At this moment I can Login a user via: …
10:52 AM Ticket #157 (Repair and test simple query wizard) created by business@…
Right now, the simple query wizard doesn't function properly and …
10:51 AM Ticket #156 (Repair full-text search) created by business@…
As of now, the full text search is hidden because it only searches on …
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