Timeline
Nov 24, 2010:
- 5:21 PM Changeset [1198] by
- Added workarounds for known template text fields bug
- 5:10 PM Changeset [1197] by
- deleted old clinical module stuff, don't know why it is still in…
- 1:57 PM Ticket #208 (Make breadcrumbs in study create/edit wizard clickable) created by
- It would be nice if the different breadcrumbs (1. Study, 2. Subjects …
- 11:47 AM Changeset [1196] by
- Streamlined CommunicationManager? and adjusted it to suit …
Nov 23, 2010:
- 3:38 PM Ticket #200 (Error met import van Samples in DCL template) closed by
- fixed
- 3:32 PM Ticket #176 (Unable to map samples for Pilot) closed by
- fixed
- 2:07 PM Changeset [1195] by
- Fixed bug. Someone called the wrong CommunicationManager? method.
- 1:59 PM Changeset [1194] by
- - removed debug line
- 1:50 PM Changeset [1193] by
- - refresh error when calling savePostview now really shouldn't popup …
- 1:34 PM Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) closed by
- fixed: It works perfect now on svn r1192, thanks!
- 12:37 PM Changeset [1192] by
- - looking into #187 which is reproducable on ci, but not on dev. …
- 12:15 PM Ticket #207 (Administrator cannot see all studies) created by
- I was looking into solving Eugene's issue #195 but I could not find …
- 11:17 AM Changeset [1191] by
- - calling savePostview url directly gives a warning now that the files …
- 11:11 AM Ticket #171 (remove field from template) closed by
- duplicate: Duplicate of #74, which has been fixed.
- 11:09 AM Ticket #206 (Create Study fails when using non-standard Assay) created by
- I've created an Assay Template called Microarray (and Microarray2). …
- 11:07 AM Ticket #181 (Delete study fails) closed by
- duplicate: Duplicate of #201. Has been fixed already
- 10:38 AM Ticket #205 (Easier renaming of subjects in study creation wizard) created by
- Currently, it is a lot of work to manually rename each subjects name. …
- 10:15 AM Changeset [1190] by
- - removed debugging info
- 10:11 AM Ticket #202 (When adding template fields, the order is not set correctly) closed by
- fixed: This problem had the same cause as the first problem in ticket #14. …
- 10:11 AM Changeset [1189] by
- Fixed ordering of template fields when adding a new field (see ticket #202)
- 10:10 AM Ticket #204 (After creation of new contacts study create wizard cannot continue) closed by
- invalid: I am currently unable to recreate the error. I will close it and …
- 10:01 AM Ticket #204 (After creation of new contacts study create wizard cannot continue) created by
- During creation of a new study, I wanted to add two contacts. Because …
- 9:47 AM Changeset [1188] by
- Fixed deletion of studies (see ticket #201)
- 9:32 AM Ticket #180 (Improve navigation structure) closed by
- fixed: Looks very nice. Closing this ticket
Nov 22, 2010:
- 7:19 PM Changeset [1187] by
- - fixed transient and samples.name error (the latter was caused by …
- 7:12 PM Changeset [1186] by
- - added some more ontology fields to the demo page in the wizard to …
- 7:08 PM Changeset [1185] by
- Automated continuous integration commit of minified JS/CSS
- 7:07 PM Changeset [1184] by
- - extended the ontology chooser with copy / paste support. When you …
- 5:28 PM Changeset [1183] by
- Automated continuous integration commit of minified JS/CSS
- 5:27 PM Changeset [1182] by
- Improved file upload fields so users can delete existing files and are …
- 5:06 PM Changeset [1181] by
- - resolved issue #180, added links to directly edit or view studies in …
- 4:33 PM Changeset [1180] by
- - enabling quicksave through the wizard since this controller was …
- 4:15 PM Ticket #170 (register for new account) closed by
- fixed: This has been solved already. See ticket #188.
- 2:23 PM Ticket #193 (Entering too long text results in unrecognizable error) closed by
- fixed: Great, the error and subsequent red ! clearly indicates which field …
- 2:16 PM Ticket #139 (When importing only information about the study itself using simple ...) closed by
- fixed: Works fine, thanks!
Nov 19, 2010:
- 1:34 PM Changeset [1179] by
- - set other url's in the communication manager as well, not sure if …
- 1:19 PM Changeset [1178] by
- - this change is part of #185 - moved object instantes out of …
- 12:31 PM Changeset [1177] by
- - removed debug println
- 12:28 PM Ticket #203 (As of 18 november the Chebi Ontology (1007) fails) created by
- Today the BootStrapStudies? was breaking on Ontology 1007: Error: …
- 12:19 PM Changeset [1176] by
- - resolved issue #187 by refactoring the TermEditor? to support the …
- 11:51 AM Changeset [1175] by
- The templateeditor is now capable of adding new items to a stringlist …
- 11:50 AM Ticket #202 (When adding template fields, the order is not set correctly) created by
- - Add a new field to e.g. the academic study, as second field (after …
- 10:55 AM Changeset [1174] by
- As of 18 november the Chebi ontology has been updated to a new …
Nov 18, 2010:
- 4:31 PM Changeset [1173] by
- fix another typo which broke study edit wizard
- 4:27 PM Changeset [1172] by
- - minor refresh fix
- 3:20 PM Changeset [1171] by
- - added add / modify to date template chooser - added some JS to …
- 2:55 PM Ticket #154 (Enhance template editor template field type chooser) closed by
- fixed: Robert's change was in r1166 Closing issue…
- 2:51 PM Changeset [1170] by
- reverting the searchable property of Event, bug is still there and …
- 2:19 PM Ticket #196 (Error when viewing contacts) closed by
- fixed: Works fine now.
- 2:17 PM Ticket #128 (exception after defining a study, cannot save the study) closed by
- fixed: Ah, wait, I didn't see that you did not put parentEvent to nullable …
- 2:16 PM Changeset [1169] by
- fix for #128 - parentEvent is now nullable
- 1:37 PM Ticket #128 (exception after defining a study, cannot save the study) reopened by
- Actually, I have to reopen it, because when testing on [1168], the …
- 1:22 PM Ticket #201 (Study deletion does not work) created by
- If I click delete when viewing a study (study/show), I get to an error …
- 1:10 PM Changeset [1168] by
- fix typo which broke study create wizard
- 1:00 PM Ticket #128 (exception after defining a study, cannot save the study) closed by
- worksforme: In [1161], I still get an exception in a popup after trying to save …
- 12:36 PM Ticket #129 (Javascript error) closed by
- worksforme: Yes, now it works for me too. Probably a glitch.
- 12:31 PM Ticket #165 (Ability to change user password) closed by
- fixed: Works fine now!
- 12:13 PM Changeset [1167] by
- Added a check for string template fields, because they can not exceed …
- 11:26 AM Changeset [1166] by
- Removed INTEGER/FLOAT templates from template editor and changed the …
- 11:21 AM Changeset [1165] by
- - removed INTEGER/FLOAT support in the Import Wizard controller and …
- 10:14 AM Ticket #154 (Enhance template editor template field type chooser) reopened by
- Indeed a logical change, but INTEGER and FLOAT are not just in …
- 10:10 AM Changeset [1164] by
- - removed INTEGER/FLOAT support in the Import Wizard and replaced them …
- 9:56 AM Ticket #200 (Error met import van Samples in DCL template) created by
- 2010-11-18 09:42:34,978 [http-8080-1] ERROR …
- 9:35 AM Changeset [1163] by
- Wrong port + URL for metabolomics module was set in Bootstrap. Changed …
Nov 17, 2010:
- 6:18 PM Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) closed by
- duplicate: duplicate of #185, closing…
- 6:05 PM Changeset [1162] by
- - resolves improvement #1, generating an assay id suggestion in the …
- 5:33 PM Changeset [1161] by
- - tried to reproduce issue #128 but it seems resolved, leaving …
- 5:31 PM Ticket #154 (Enhance template editor template field type chooser) closed by
- fixed: Great! I had to run the following query in the CI database to avoid …
- 5:26 PM Ticket #199 (enhance event table view) created by
- In the study overview, the events table can get quite cluttered up, …
- 4:23 PM Changeset [1160] by
- Removed printlns that were added for debugging
- 4:20 PM Changeset [1159] by
- Improved the template editor so that template fields can be removed …
- 2:32 PM Changeset [1158] by
- Automated continuous integration commit of minified JS/CSS
- 2:31 PM Changeset [1157] by
- Removed unnecessary REST call from term editor
- 2:31 PM Changeset [1156] by
- Updated ontology chooser to also return an NCBO id when no NCBO id is …
- 2:12 PM Changeset [1155] by
- - resolving issue #195, sample generation madness. This was partly …
- 12:07 PM Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) closed by
- fixed: setup trunk/tags/branches for each nmcdsp plugin in the grails-plugins …
- 11:52 AM Changeset [1154] by
- Fixed exception when viewing the list of persons. See ticket #196.
- 11:34 AM Changeset [1153] by
- Removed template field types INTEGER and FLOAT (since LONG and DOUBLE …
- 11:31 AM Ticket #198 (Error messages in study wizard should be more user friendly) created by
- When you create or edit a study, and you fill in a wrong value for a …
- 10:45 AM Changeset [1152] by
- Changed flash.error to flash.userError in the authentication part to …
- 10:44 AM Ticket #197 (User creation / approval process breaks the study wizard) closed by
- fixed: I've changed it to flash.userError instead of flash.error. It's …
Nov 16, 2010:
- 8:34 PM Changeset [1151] by
- - removed my email address to prevent spambot hell
- 6:57 PM Ticket #99 (in study create wizard, after adding a number of species, the choices ...) closed by
- worksforme: cannot reproduce... is probably already fixed
- 6:56 PM Ticket #94 (re-layout study create wizard, info boxes should stand out more and ...) closed by
- wontfix: I'm not sure if this feedback is valid anymore as it is months old... …
- 6:48 PM Changeset [1150] by
- - resolves issue #180
- 6:30 PM Changeset [1149] by
- - resolving issue #197 where the study wizard breaks is flash.errors …
- 6:27 PM Ticket #197 (User creation / approval process breaks the study wizard) created by
- Since #188 and #189 have been implemented, the account creation …
- 5:50 PM Ticket #189 (Clean up unvalidated accounts & account creation) closed by
- fixed: Tested it except for the 3 days timeout and had a look at the change ( …
- 5:40 PM Ticket #188 (Implement rfc 2822 compliant email validation) closed by
- fixed: Yeah you're right, and it seems to work okay as well.. closing this issue.
- 4:47 PM Changeset [1148] by
- - multiselect and add/remove added, only entity needs to be passed (todo)
- 3:47 PM Changeset [1147] by
- Resolved exception with the RegisterCommand?
- 3:18 PM Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) closed by
- fixed: Cool! Added larger column width for sample names in [1146]. This …
- 3:16 PM Changeset [1146] by
- enlarge column width for sample name in study create/edit wizard
- 3:13 PM Changeset [1145] by
- - grom 0.2.0 has been published to the Grails repo, yay! Upgrading to …
- 2:57 PM Changeset [1144] by
- Added an expiry date to the confirmation email for the user and …
- 2:39 PM Ticket #147 (Edit study wizard doesn't work anymore) closed by
- worksforme: Works again thanks to reverting to 1.3.4.
- 2:26 PM Ticket #196 (Error when viewing contacts) created by
- Choosing contacts > view persons in the menu …
- 2:24 PM Ticket #190 (Create Study seems to fail when saving, but reclicking next works) closed by
- duplicate: This is most likely a duplicate of #193.
- 2:14 PM Ticket #194 (Missing Samples in Create Study Wizard) closed by
- duplicate
- 1:22 PM Ticket #195 (Regenerate samples in study edit wizard after editing events) created by
- When someone edits a study in the study edit wizard, changing sampling …
- 11:47 AM Changeset [1143] by
- - import wizard: fuzzy matching for column properties (step 2) implemented
- 10:43 AM Changeset [1142] by
- - "go back" link not shown in the last step of the wizard, if no …
- 10:23 AM Ticket #194 (Missing Samples in Create Study Wizard) created by
- When creating a new study with the wizard, step 5 does not work …
Nov 15, 2010:
- 11:56 PM Ticket #193 (Entering too long text results in unrecognizable error) created by
- While editing a study, I tried to fill in a study description that …
- 11:10 PM Changeset [1141] by
- - added fuzzy matching to importer tag library
- 8:25 PM Changeset [1140] by
- - added ability to add new ontologies in the "missing properties" step
- 4:05 PM Ticket #192 (Add Datatype user-extendible String list (as in ontology)) created by
- For many fields, the data manager wants the user to try to select from …
- 3:57 PM Changeset [1139] by
- - fixed application.properties as it was committed with grails 1.3.5 …
- 2:33 PM Ticket #191 (Include searchable Xrefs in Ontology terms (bv CAS for CHEBI)) created by
- CAS nr are a commonly used ID for compounds. So when looking for a …
- 1:36 PM Changeset [1138] by
- Implemented ability to changed password and email address when logged …
- 12:52 PM Changeset [1137] by
- - missing properties added Add ontology…
- 11:51 AM Ticket #190 (Create Study seems to fail when saving, but reclicking next works) created by
- When creating a study, I get this error when it tries to save …
- 11:44 AM Ticket #189 (Clean up unvalidated accounts & account creation) created by
- Currently, accounts need to be validated by clicking a confirmation …
- 11:35 AM Ticket #188 (Implement rfc 2822 compliant email validation) created by
- Currently, email fields are not being checked throughout the …
- 11:22 AM Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) created by
- During study creation, I created subjects of Rat template. This …
- 11:06 AM Changeset [1136] by
- Improved template editor to show field details when a field is …
- 10:54 AM Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) created by
- 10:51 AM Ticket #185 (Set up an initial version of the 'getting started' wizard) created by
- Set up a 'getting started' wizard. On a clean installation of gscf the …
- 10:44 AM Ticket #184 (Unify GSCF module-side client with Michael) created by
- 10:33 AM Ticket #183 (Rewrite #1 : rewrite ajaxified web flows into plugin) created by
- Ajaxified web flows are now being used among projects, which makes …
- 10:31 AM Ticket #182 (Implement the import wizard as a webflow) created by
- Stabilize
- 10:23 AM Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) closed by
- fixed
- 8:45 AM Ticket #181 (Delete study fails) created by
- When I try to delete a previously imported study, I get the message …
Nov 12, 2010:
- 6:08 PM Changeset [1135] by
- - updated dbnp vhosts -This line, and those below, will be ignored-- …
- 6:05 PM Changeset [1134] by
- - check voor dbnpdemo instead of demo
- 3:51 PM Changeset [1133] by
- - it looks like an environment may not contain dashes?
- 3:31 PM Changeset [1132] by
- adding dbnp apache vhost configuration
- 3:31 PM Ticket #140 (Error when importing studies that have values that do not match a ...) reopened by
- Actually there are still a number of things to be dealt with: * Right …
- 3:31 PM Changeset [1131] by
- removed obsolete files
- 3:10 PM Changeset [1130] by
- - changed nbx test and demo configurations to reflect dbnp.org domain names
- 3:01 PM Ticket #180 (Improve navigation structure) created by
- Right now, the navigation structure for editing/viewing/importing …
- 2:59 PM Changeset [1129] by
- - changed nbx test and demo configurations to reflect dbnp.org domain names
- 2:54 PM Ticket #179 (In template editor, add dropdown possibility of used fields) created by
- In the template editor (fields overview), when field on the right are …
- 1:29 PM Changeset [1128] by
- - added demo instance introduction page
- 12:11 PM Changeset [1127] by
- - added demo configuration
- 12:08 PM Changeset [1126] by
- - initial fuzzy logic incorporated in Importer service
Nov 11, 2010:
- 4:22 PM Ticket #178 (saveCorrectedCells breaks when importing a simple 3 column excel doc.) created by
- Grails Runtime Exception Error Details Error 500: Executing action …
- 4:05 PM Changeset [1125] by
- fix to avoid error message when trying to compare templates when none …
- 2:59 PM Changeset [1124] by
- - improved deploy script
- 2:55 PM Changeset [1123] by
- - tiny word change
- 2:53 PM Changeset [1122] by
- - preview fixed (sometimes didn't show all values read from Excel), …
- 2:29 PM Changeset [1121] by
- - rewrote part of the importer and added a ImportRecord? and ImportCell? …
- 1:58 PM Changeset [1120] by
- - fixing springSecurityService issue in static methods
- 1:39 PM Changeset [1119] by
- - initial version of the setup assistant
- 12:18 PM Changeset [1118] by
- - cleaned up the Bootstrap
Nov 10, 2010:
- 5:13 PM Changeset [1117] by
- test.nmcdsp.org and ci.nmcdsp.org now also work and point to their …
- 12:50 PM Changeset [1116] by
- Tagging the 0.6.0 release of gscf.
- 12:47 PM Changeset [1115] by
- - finalized source to 0.6.0
- 12:30 PM Changeset [1114] by
- - added nbx14 config, we need a better solution to support multiple …
- 10:33 AM Changeset [1113] by
- some fixes / improvements in the deploy script
- 9:37 AM Changeset [1112] by
- SimpleTox? exporter + ZIP file for multiple studies + error handling
- 9:35 AM Ticket #130 (SimpleTox exporter) closed by
- fixed: Exporting as SimpleTox? works good : - EventGroup? properties missing …
- 12:25 AM Ticket #177 (Integrate importer into create study wizard) created by
- The importer should be integrated (via a popup, or transparently as …
Nov 9, 2010:
- 8:21 PM Ticket #175 (Move oauth plugin to grails plugins project) closed by
- fixed: Moved.
- 7:01 PM Changeset [1111] by
- - removing debug lines that template field values are being set…
- 6:53 PM Changeset [1110] by
- - bootstrapping tried to insert duplicate ontologies…
- 6:37 PM Changeset [1109] by
- - instantiating messages are gone
- 6:35 PM Changeset [1108] by
- - instantiating messages go to debug loglevel
- 6:12 PM Changeset [1107] by
- - changed SAM url configuration - guys, bootstrap is a terrible …
- 2:55 PM Changeset [1106] by
- - added environments used by build scripts (e.g. ci, test and www)
- 1:39 PM Ticket #176 (Unable to map samples for Pilot) reopened by
- 1:38 PM Ticket #176 (Unable to map samples for Pilot) closed by
- worksforme: Tested it again here, but I cannot reproduce it here. If I have an …
- 12:55 PM Changeset [1105] by
- - refactored ci script to allow other (test, www) deployments - …
- 12:51 PM Changeset [1104] by
- revised virtual host configuration
- 10:19 AM Ticket #140 (Error when importing studies that have values that do not match a ...) closed by
- worksforme: Owner permission check was already there, but now when a Study is …
- 10:14 AM Changeset [1103] by
- - added error page for importer - empty ontologies detected in Excel …
- 9:52 AM ScenarioEugene edited by
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- 9:29 AM Changeset [1102] by
- fixed bug in confirmation step of wizard
Nov 8, 2010:
- 5:10 PM Changeset [1101] by
- Fixed the getSamples REST function. When with a sampleToken it …
- 4:20 PM Ticket #176 (Unable to map samples for Pilot) created by
- When trying to map samples via an import I get this: …
- 3:34 PM ScenarioEugene edited by
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- 1:55 PM ScenarioEugene created by
- 12:53 PM Changeset [1100] by
- Fixed 401 error
- 12:26 PM Changeset [1099] by
- Authentication test
- 12:16 PM Changeset [1098] by
- AuthenticationService? instantiated
- 12:08 PM Changeset [1097] by
- A -> a
- 12:06 PM Changeset [1096] by
- commented out authenticationservice in loadstudy method
- 10:59 AM Ticket #175 (Move oauth plugin to grails plugins project) created by
- 10:57 AM Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) created by
- 10:54 AM Ticket #173 (Update specification of REST methods from modules to GSCF back) created by
- 10:23 AM Ticket #137 (Error when comparing two studies in v0.5.0) closed by
- fixed
- 10:23 AM Ticket #133 (Implement module assay jump functionality) closed by
- fixed
- 10:21 AM Ticket #132 (Create a study generator page) closed by
- fixed
- 10:17 AM Ticket #131 (add/modify REST method which allows for getting metadata multiple samples) closed by
- fixed
- 10:16 AM Ticket #57 (enhance REST services) closed by
- worksforme
Nov 7, 2010:
- 10:57 PM Changeset [1095] by
- Added access to template fields of Event and Subject in getSamples …
- 10:08 PM Changeset [1094] by
- Added TemplateFields? to be returned in getSamples REST resource.
Nov 6, 2010:
- 4:01 PM Changeset [1093] by
- - failed cells correction now implemented in an extra step which …
Nov 5, 2010:
- 9:11 PM Milestone 0.6 completed
- Full implementation of Authentication and Authorization. This is a …
- 9:02 PM Changeset [1092] by
- Pilot is user-aware adds a memu item Pilot
- 3:51 PM Changeset [1091] by
- - refactored and redesigned search page - bugfixed the build …
- 1:12 PM Changeset [1090] by
- oops, introduced a typo, now fixed
- 1:11 PM Changeset [1089] by
- added xbean.jar
- 12:59 PM Changeset [1088] by
- Upgraded poi xml libs to 3.7
- 12:43 PM Ticket #136 (Search study data does not work in v0.5.0) closed by
- worksforme: This should be fixed now.
- 11:55 AM Changeset [1087] by
- Added xlsx import functionality
Nov 4, 2010:
- 5:33 PM Ticket #172 (tables of templates are not correctly shown in IE) created by
- tables that are generated at the subject, event and samples step of …
- 5:16 PM Changeset [1086] by
- - updated apache configuration
- 5:06 PM Ticket #171 (remove field from template) created by
- Field cannot be removed from a template (even if the field is not used).
- 5:04 PM Changeset [1085] by
- - build info resized to the left
- 4:53 PM Changeset [1084] by
- - and another CSS fix
- 4:51 PM Ticket #170 (register for new account) created by
- I created a new account, but used a none existing email-adres …
- 4:49 PM Changeset [1083] by
- - added logic for cleaning up 'failed cells' in the imported datamatrix
- 4:46 PM Changeset [1082] by
- - IE CSS bugfix
- 4:37 PM Ticket #169 (log in for view studies) created by
- If you come on the GSCF website in login field is very small. Choosing …
- 4:28 PM Changeset [1081] by
- - updated CI script to support new build information
- 4:03 PM Changeset [1080] by
- - created a generic info template showing build, deploy and uptime …
- 2:13 PM Changeset [1079] by
- - add check tomcat script
- 12:25 PM Changeset [1078] by
- Automated continuous integration commit of minified JS/CSS
- 12:23 PM Changeset [1077] by
- Resolved bugs in adding ontology-template-fields to a template. See …
- 12:00 PM Changeset [1076] by
- - removed grom from removed plugins…
- 11:58 AM Changeset [1075] by
- Automated continuous integration commit of minified JS/CSS
- 11:35 AM Changeset [1074] by
- Automated continuous integration commit of minified JS/CSS
- 11:34 AM Ticket #167 (Wizard sample page does not continue: Cannot invoke method ...) closed by
- fixed: Resolved in r1073, please retest on ci instance…
- 11:33 AM Changeset [1073] by
- - resolves issue #167
- 11:12 AM Ticket #164 (Exception in create wizard when creating assay but no samples) closed by
- duplicate: This issue was also reported as duplicate issue #167, as the latter …
- 10:59 AM Ticket #158 (Create a remote logout call) closed by
- fixed
- 10:55 AM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by
- fixed
- 9:42 AM Ticket #168 (Import Study fails at Step 5: 0 out of 3 rows imported succesfully) created by
- I've tried to import studies using a simple excel sheet (attached). At …
- 9:37 AM Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) closed by
- invalid: Eugene, never reopen a ticket which has been resolved unless you are …
- 9:36 AM Ticket #167 (Wizard sample page does not continue: Cannot invoke method ...) created by
- When creating a study in the wizard, the wizard doest not continue to …
- 9:26 AM Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) reopened by
- A very similar problem occurs again on http://gscf.nmcdsp.org/ the …
- 12:02 AM Changeset [1072] by
- - disabled plugin debugging, seems like the grom issues have been resolved
Nov 3, 2010:
- 11:54 PM Changeset [1071] by
- - updated grom plugin to 0.1.15, this should now work properly on …
- 8:29 PM Changeset [1070] by
- - ' failed cells' page form with ontology chooser implemented
- 8:28 PM Changeset [1069] by
- - improved grom windows support - updated grom version to 0.1.14 - …
- 6:57 PM Changeset [1068] by
- - upgraded grom to 0.1.13 (improved growl for windows support)
- 5:57 PM Changeset [1067] by
- - authentication service was not defined in the loadStudy logic
- 5:31 PM Changeset [1066] by
- - initialize flash.errors in loadStudy logic
- 5:04 PM Changeset [1065] by
- changed page footer
- 4:58 PM Changeset [1064] by
- downgraded grails version to 1.3.4 to circumvent #147 …
- 4:53 PM Changeset [1063] by
- removed unnecessary text from home page in production version
- 4:30 PM Changeset [1062] by
- repaired menu item for Assay template editor
- 4:27 PM Changeset [1061] by
- updated ontology tests and deleted tests for REST methods that should …
- 4:25 PM Ticket #84 (add ontologies chooser to template editor) reopened by
- At this point somehow it doesn't work any more. If I want to add an …
- 3:53 PM Ticket #166 (Automatically match column names to template field names in importer) created by
- It would be nice if the importer automatically would match e.g. column …
- 3:40 PM Ticket #165 (Ability to change user password) created by
- Right now I get a password emailed by the registration process, but …
- 2:59 PM Changeset [1060] by
- - updated POI library to 3.7 (2010-10-29 release) for handling Excel files
- 2:51 PM Changeset [1059] by
- - only show own studies
- 2:26 PM Ticket #164 (Exception in create wizard when creating assay but no samples) created by
- When you specify no samples in the create study wizard, but you do add …
- 2:05 PM Ticket #163 (After Import Study Data the new studies are not visible) closed by
- worksforme: This should really be fixed now, the authenticated user is assigned to …
- 2:03 PM Changeset [1058] by
- - added failed cells view/logic - fixed Study-owner bug
- 1:58 PM Changeset [1057] by
- - upgraded grom to 0.1.12 (experimental windows support)
- 12:58 PM Changeset [1056] by
- Changed template editor to be more user friendly with selecting field …
- 12:43 PM Ticket #163 (After Import Study Data the new studies are not visible) created by
- After importing study data GSCF says that x out of x rows/studies were …
- 11:45 AM Changeset [1055] by
- - reverted last dev commit…
- 11:43 AM Changeset [1054] by
- - fixed linux support - updated to 0.1.12
- 10:48 AM Changeset [1053] by
- Fixed a bug in the remote logout call.
- 9:10 AM Changeset [1052] by
- error on ExporterController?
- 8:48 AM Changeset [1051] by
- error messages in ExporterController? for SimpleTox?
Nov 2, 2010:
- 4:48 PM Changeset [1050] by
- - initial "failed cells" logic figured out, now extracts cells from …
- 3:41 PM Changeset [1049] by
- Pilot almost there…
- 2:13 PM Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) closed by
- fixed: I have refactored the plugin to not use gant/ant. Because native …
- 1:24 PM Changeset [1048] by
- - upgraded the grom plugin to 0.1.11, should fix the issues on tomcat
- 1:11 PM Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) created by
- Should be as easy as using this import: import …
- 1:06 PM Ticket #161 (GSCF Documentation) created by
- Write user documentation for GSCF, using a simple example study as guide.
- 11:15 AM Changeset [1047] by
- - referer for now obtained via redirectTo param in the URL
- 11:01 AM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) reopened by
- The Referrer takes me back to STEP5 of the wizard... (before save), …
- 10:25 AM Changeset [1046] by
- Update NMC Pilot pages
- 9:42 AM Changeset [1045] by
- - temporary removed addition of failed cells to when using …
Nov 1, 2010:
- 9:42 PM Changeset [1044] by
- - added record which contains failed columns, should be passed to an …
- 6:37 PM Changeset [1043] by
- - packaging Gant in the plugin seems to work, however now ant is …
- 6:30 PM Changeset [1042] by
- - upgraded grom to 0.1.9 to see if this works on tomcat
- 6:13 PM Changeset [1041] by
- Automated continuous integration commit of minified JS/CSS
- 6:11 PM Changeset [1040] by
- - made column widths changeable by adding: …
- 5:14 PM Ticket #135 ([wizard] All data is returned in a random order) closed by
- fixed: works for me…
- 5:10 PM Changeset [1039] by
- Automated continuous integration commit of minified JS/CSS
- 5:05 PM Changeset [1038] by
- - removed todo from confirmation page
- 5:04 PM Ticket #153 (Improve confirmation page of wizard) closed by
- fixed: improved the confirmation page in r1037
- 5:03 PM Changeset [1037] by
- - fixed issue #153, improved the confirmation page (removed dummy …
- 4:49 PM Changeset [1036] by
- Fixed the random order of templates in the study pages (#135) and …
- 4:38 PM Changeset [1035] by
- SimpleTox? exporter with file downloading system
- 4:18 PM Ticket #150 (Implement Sample.parentEventGroup) closed by
- fixed: - implemented in svn revision r:1034
- 4:17 PM Changeset [1034] by
- - implemented improvement #150 ( https://trac.nbic.nl/gscf/ticket/150 …
- 4:14 PM Changeset [1033] by
- - developmental and administration menu items are now icons to save …
- 3:41 PM Changeset [1032] by
- - added the jquery-ui autocomplete html extention to the wizard
- 2:54 PM Changeset [1031] by
- Bug in study comparison view fixed, so multiple studies can be compared
- 2:17 PM Changeset [1030] by
- Extra check whether an owner has been added for a study, to prevent a …
- 1:17 PM Changeset [1029] by
- Compare templates view updated.
- 12:48 PM Changeset [1028] by
- - fixed NPE when empty cells were read from Excel and the property, …
- 12:42 PM Changeset [1027] by
- Implemented compare templates feature and fixed show studies overview …
- 12:35 PM Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) created by
- On tomcat the plugin results in the following error: 2010-11-01 …
- 11:52 AM Changeset [1026] by
- - changed the CI script so that it works grails independently. This …
- 11:40 AM Changeset [1025] by
- - forgot to remove one .grom() call…
- 11:30 AM Changeset [1024] by
- - removed the String.grom() calls as grom is not stable on tomcat: …
- 11:28 AM Changeset [1023] by
- - uninstall grom in ci build as it currently is unstable on tomcat
- 11:21 AM Changeset [1022] by
- * grom 0.1.8
- 10:07 AM Ticket #63 (importing subjects twice does not add information to existing subjects ...) closed by
- fixed: This should be fixed by now. There is being checked whether the entity …
Oct 29, 2010:
- 5:52 PM Changeset [1021] by
- - upgraded grom to 0.1.7
- 5:47 PM Changeset [1020] by
- - upgraded grom to 0.1.6
- 5:38 PM Changeset [1019] by
- - ci script should not remove the grom plugin as it extends the String …
- 5:34 PM Changeset [1018] by
- - upgraded grom plugin 0.1.5 as 0.1.4 breaks application on tomcat - …
- 12:56 PM Changeset [1017] by
- Fixed JSON Response of getAuthorizationLevel
- 12:48 PM Changeset [1016] by
- Removed minor bug.
- 12:41 PM Changeset [1015] by
- - updating grom to 0.1.4 (Linux support)
- 11:15 AM Changeset [1014] by
- Refactored AssayModule?.url to AssayModule?.consumer in all parts effected.
Oct 28, 2010:
- 8:05 PM Changeset [1013] by
- changed Ontology ncboId to unique, extended range of fulltext query
- 7:45 PM Changeset [1012] by
- - upgrading grom plugin to 1.1.3 - using String.grom() in bootstrap - …
- 5:16 PM Changeset [1011] by
- Ticket #57. Unified getStudy and getStudies. Note: Could not get …
- 4:39 PM Changeset [1010] by
- Ticket #57 - Unified getAssays and getAssay. Also, added convenience …
- 4:29 PM Ticket #159 (Excel exporter) created by
- We need to implement the querying functionality as specified in the …
- 3:48 PM Changeset [1009] by
- now really fixed backlink for jumpbar link
- 3:07 PM Changeset [1008] by
- Upped jumpbar version and fixed backlink for jumpbar link
- 2:15 PM Changeset [1007] by
- - updated existing vhosts to reflect changes in domain naming - added …
- 2:11 PM Ticket #158 (Create a remote logout call) created by
- At this moment I can Login a user via: …
- 10:52 AM Ticket #157 (Repair and test simple query wizard) created by
- Right now, the simple query wizard doesn't function properly and …
- 10:51 AM Ticket #156 (Repair full-text search) created by
- As of now, the full text search is hidden because it only searches on …
Oct 27, 2010:
- 6:25 PM Ticket #61 (making a new template by extending an existing one ) closed by
- fixed: I've added a clone template feature yesterday, and that will do the …
- 5:57 PM Changeset [1006] by
- Automated continuous integration commit of minified JS/CSS
- 5:56 PM Ticket #149 (termEditor autocomplete recently started escaping span elements in ...) closed by
- fixed: Apparently the change to escape HTML was done by design and hence not …
- 5:55 PM Changeset [1005] by
- resolves #149
- 4:58 PM Ticket #155 ('Show Studies' page needs to be re-developed) created by
- Currently the 'show studies' page is a huge legacy page and a total …
- 4:58 PM Ticket #80 (mark a whole row (all groups) in a template is not possible) closed by
- wontfix: I see what you mean, assigning one treatment to multiple groups at …
- 4:45 PM Ticket #64 (import wizard not accessible via create/edit study) closed by
- worksforme
- 4:45 PM Ticket #154 (Enhance template editor template field type chooser) created by
- Right now, the template field type chooser in the template editor …
- 4:39 PM Ticket #153 (Improve confirmation page of wizard) created by
- On the confirmation page of the study create wizard, there are some …
- 4:38 PM Ticket #58 (template cannot be added or modified) closed by
- duplicate: duplicate to #60
- 4:34 PM Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) created by
- In the study create/edit wizard, when the samples are generated, it's …
- 4:15 PM Ticket #65 (DOB subjects with stringlist only from the year 2000 on and later) closed by
- fixed: Resolved in #1003. It now shows -80 and +20 years relative to the …
- 4:15 PM Changeset [1004] by
- Automated continuous integration commit of minified JS/CSS
- 4:13 PM Changeset [1003] by
- resolves #65, datetime picker showing only -10 + 10 years in select
- 4:04 PM Ticket #151 (Database administration) created by
- At the moment, any user that obtains a login is able to add new …
- 3:50 PM Changeset [1002] by
- - added functionality to check for existing entities when importing …
- 3:29 PM Changeset [1001] by
- Ticket 57. Merged getSample and getSamples into one REST resource. …
- 2:54 PM Ticket #127 (take into account ontology versioning, make more use of Ontocat) reopened by
- 2:38 PM Changeset [1000] by
- first version for a SimpleTox? Exporter : go to Studies > Export as …
- 2:27 PM Ticket #140 (Error when importing studies that have values that do not match a ...) reopened by
- Eugene to Tjeerd (in Dutch): "Bedankt voor je aandacht aan dit …
- 12:21 PM Changeset [999] by
- - fixed constraint violation error by adding parent to the entities
- 9:55 AM Ticket #150 (Implement Sample.parentEventGroup) created by
- Store Sample.parentEventGroup (add as nullable property to domain …
Oct 26, 2010:
- 5:08 PM Ticket #149 (termEditor autocomplete recently started escaping span elements in ...) created by
- probably related to the recent upgrade of the jquery plugin and the …
- 5:03 PM Changeset [998] by
- - removed the identifiers from the wizard views
- 4:35 PM Ticket #127 (take into account ontology versioning, make more use of Ontocat) closed by
- fixed: Resolved in svn #997. Resolution: before adding a new ontology, a …
- 4:33 PM Changeset [997] by
- - resolved issue #127 ( https://trac.nbic.nl/gscf/ticket/127 ): new …
- 3:19 PM Changeset [996] by
- Implemented clone feature in template editor (ticket #6), added a rest …
- 3:03 PM Ticket #6 (clone feature) closed by
- fixed: Clone feature is added to the original template editor, and the …
- 2:53 PM Changeset [995] by
- Added jumpbar again
- 2:47 PM Changeset [994] by
- Removed extra view table cell from assay table
- 2:38 PM Ticket #140 (Error when importing studies that have values that do not match a ...) closed by
- fixed: Fixed this exception which came when trying to import data which …
- 2:36 PM Changeset [993] by
- - fixed exception which came when trying to import data which cannot …
- 1:20 PM Ticket #14 ((re)ordering template fields doesn't work perfect) closed by
- fixed: #1 was a bug, that's fixed. #2 was because the fields are reordered …
- 12:54 PM Changeset [992] by
- - removed logfile - set all logfiles to ignore
- 12:44 PM Ticket #79 (preview of columns in simple import wizard) closed by
- fixed: Old ticket, but this was implemented already a while ago. At least …
- 11:46 AM Ticket #118 (Implement Authorization and Authentication) closed by
- fixed: THis is added to the trunk. The authentication is done without oauth …
- 11:31 AM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by
- fixed: First call of the importer the referrer is stored in a session and in …
Oct 25, 2010:
- 5:25 PM Ticket #36 (naming groups on template impossible) closed by
- fixed
- 5:21 PM Ticket #146 (Presentation mode of dbnp.org misses information on page 2 and 3) closed by
- fixed: This is now solved.
- 5:08 PM Ticket #145 (Running GSCF demo as frame inside http://dbnp.org causes inconvenient ...) closed by
- fixed: Solved by putting a direct link to the demo on dbnp.org.
- 5:04 PM Ticket #142 (Edit/create study template should be available directly from main menu) closed by
- duplicate: Duplicate of #7
- 4:32 PM Changeset [991] by
- Automated continuous integration commit of minified JS/CSS
- 4:30 PM Changeset [990] by
- Fixed bug #21: error when adding a person to a study without selecting …
- 4:29 PM Ticket #21 (adding a contact without selecting a role seems possible, but results ...) closed by
- fixed: The script now checks whether a person and a role have been selected …
- 4:29 PM Changeset [989] by
- - added referer to the last step of the wizard
- 4:25 PM Changeset [988] by
- Automated continuous integration commit of minified JS/CSS
- 4:23 PM Changeset [987] by
- Fixed bug #15
- 4:21 PM Ticket #15 (not possible to fill in affiliations) closed by
- fixed: I've added a link to the 'affiliation-manager-screen' to - the screen …
- 4:07 PM Ticket #95 (ApoE3Leiden muis is niet in de strain ontology) closed by
- worksforme: Gebruik de Black Six strain en specificeer ApoE3Leiden by Genotype …
- 4:07 PM Ticket #50 (storing TEXT fields does not work in production environment) closed by
- This depends on http://jira.codehaus.org/browse/GRAILS-6754 being …
- 3:56 PM Changeset [986] by
- Added plugin famfamfam again
- 3:28 PM Changeset [985] by
- Removed spring-security-ui plugin to decrease dependencies. The …
- 12:46 PM Ticket #148 (Import - Store referrer to continue where you were when going to the ...) created by
- Can you make the importer to redirect to the place where you left of …
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