Timeline


and

24-11-10:

17:21 Changeset [1198] by t.e.roos@…
Added workarounds for known template text fields bug
17:10 Changeset [1197] by business@…
deleted old clinical module stuff, don't know why it is still in…
13:57 Ticket #208 (Make breadcrumbs in study create/edit wizard clickable) created by business@…
It would be nice if the different breadcrumbs (1. Study, 2. Subjects etc) …
11:47 Changeset [1196] by j.saito@…
Streamlined CommunicationManager? and adjusted it to suit …

23-11-10:

15:38 Ticket #200 (Error met import van Samples in DCL template) closed by m.s.vanvliet@…
fixed
15:32 Ticket #176 (Unable to map samples for Pilot) closed by m.s.vanvliet@…
fixed
14:07 Changeset [1195] by j.saito@…
Fixed bug. Someone called the wrong CommunicationManager? method.
13:59 Changeset [1194] by t.w.abma@…
- removed debug line
13:50 Changeset [1193] by t.w.abma@…
- refresh error when calling savePostview now really shouldn't popup …
13:34 Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) closed by e.vansomeren@…
fixed: It works perfect now on svn r1192, thanks!
12:37 Changeset [1192] by work@…
- looking into #187 which is reproducable on ci, but not on dev. Testing …
12:15 Ticket #207 (Administrator cannot see all studies) created by work@…
I was looking into solving Eugene's issue #195 but I could not find the …
11:17 Changeset [1191] by t.w.abma@…
- calling savePostview url directly gives a warning now that the files …
11:11 Ticket #171 (remove field from template) closed by robert@…
duplicate: Duplicate of #74, which has been fixed.
11:09 Ticket #206 (Create Study fails when using non-standard Assay) created by e.vansomeren@…
I've created an Assay Template called Microarray (and Microarray2). …
11:07 Ticket #181 (Delete study fails) closed by robert@…
duplicate: Duplicate of #201. Has been fixed already
10:38 Ticket #205 (Easier renaming of subjects in study creation wizard) created by e.vansomeren@…
Currently, it is a lot of work to manually rename each subjects name. In …
10:15 Changeset [1190] by t.w.abma@…
- removed debugging info
10:11 Ticket #202 (When adding template fields, the order is not set correctly) closed by robert@…
fixed: This problem had the same cause as the first problem in ticket #14. Solved …
10:11 Changeset [1189] by robert@…
Fixed ordering of template fields when adding a new field (see ticket …
10:10 Ticket #204 (After creation of new contacts study create wizard cannot continue) closed by e.vansomeren@…
invalid: I am currently unable to recreate the error. I will close it and reopen if …
10:01 Ticket #204 (After creation of new contacts study create wizard cannot continue) created by e.vansomeren@…
During creation of a new study, I wanted to add two contacts. Because they …
09:47 Changeset [1188] by robert@…
Fixed deletion of studies (see ticket #201)
09:32 Ticket #180 (Improve navigation structure) closed by robert@…
fixed: Looks very nice. Closing this ticket

22-11-10:

19:19 Changeset [1187] by t.w.abma@…
- fixed transient and samples.name error (the latter was caused by …
19:12 Changeset [1186] by work@…
- added some more ontology fields to the demo page in the wizard to ease …
19:08 Changeset [1185] by work@…
Automated continuous integration commit of minified JS/CSS
19:07 Changeset [1184] by work@…
- extended the ontology chooser with copy / paste support. When you have …
17:28 Changeset [1183] by work@…
Automated continuous integration commit of minified JS/CSS
17:27 Changeset [1182] by robert@…
Improved file upload fields so users can delete existing files and are …
17:06 Changeset [1181] by work@…
- resolved issue #180, added links to directly edit or view studies in …
16:33 Changeset [1180] by work@…
- enabling quicksave through the wizard // since this controller was …
16:15 Ticket #170 (register for new account) closed by robert@…
fixed: This has been solved already. See ticket #188.
14:23 Ticket #193 (Entering too long text results in unrecognizable error) closed by e.vansomeren@…
fixed: Great, the error and subsequent red ! clearly indicates which field has …
14:16 Ticket #139 (When importing only information about the study itself using simple ...) closed by e.vansomeren@…
fixed: Works fine, thanks!

19-11-10:

13:34 Changeset [1179] by work@…
- set other url's in the communication manager as well, not sure if they …
13:19 Changeset [1178] by work@…
- this change is part of #185 - moved object instantes out of …
12:31 Changeset [1177] by work@…
- removed debug println
12:28 Ticket #203 (As of 18 november the Chebi Ontology (1007) fails) created by work@…
Today the BootStrapStudies? was breaking on Ontology 1007: Error: …
12:19 Changeset [1176] by work@…
- resolved issue #187 by refactoring the TermEditor? to support the ncboId …
11:51 Changeset [1175] by robert@…
The templateeditor is now capable of adding new items to a stringlist …
11:50 Ticket #202 (When adding template fields, the order is not set correctly) created by robert@…
- Add a new field to e.g. the academic study, as second field (after …
10:55 Changeset [1174] by work@…
As of 18 november the Chebi ontology has been updated to a new version. …

18-11-10:

16:31 Changeset [1173] by business@…
fix another typo which broke study edit wizard
16:27 Changeset [1172] by t.w.abma@…
- minor refresh fix
15:20 Changeset [1171] by t.w.abma@…
- added add / modify to date template chooser - added some JS to handle …
14:55 Ticket #154 (Enhance template editor template field type chooser) closed by work@…
fixed: Robert's change was in r1166 Closing issue…
14:51 Changeset [1170] by business@…
reverting the searchable property of Event, bug is still there and causes …
14:19 Ticket #196 (Error when viewing contacts) closed by business@…
fixed: Works fine now.
14:17 Ticket #128 (exception after defining a study, cannot save the study) closed by business@…
fixed: Ah, wait, I didn't see that you did not put parentEvent to nullable again …
14:16 Changeset [1169] by business@…
fix for #128 - parentEvent is now nullable
13:37 Ticket #128 (exception after defining a study, cannot save the study) reopened by business@…
Actually, I have to reopen it, because when testing on [1168], the problem …
13:22 Ticket #201 (Study deletion does not work) created by business@…
If I click delete when viewing a study (study/show), I get to an error …
13:10 Changeset [1168] by business@…
fix typo which broke study create wizard
13:00 Ticket #128 (exception after defining a study, cannot save the study) closed by business@…
worksforme: In [1161], I still get an exception in a popup after trying to save the …
12:36 Ticket #129 (Javascript error) closed by business@…
worksforme: Yes, now it works for me too. Probably a glitch.
12:31 Ticket #165 (Ability to change user password) closed by business@…
fixed: Works fine now!
12:13 Changeset [1167] by robert@…
Added a check for string template fields, because they can not exceed 255 …
11:26 Changeset [1166] by robert@…
Removed INTEGER/FLOAT templates from template editor and changed the …
11:21 Changeset [1165] by t.w.abma@…
- removed INTEGER/FLOAT support in the Import Wizard controller and …
10:14 Ticket #154 (Enhance template editor template field type chooser) reopened by work@…
Indeed a logical change, but INTEGER and FLOAT are not just in …
10:10 Changeset [1164] by t.w.abma@…
- removed INTEGER/FLOAT support in the Import Wizard and replaced them …
09:56 Ticket #200 (Error met import van Samples in DCL template) created by m.s.vanvliet@…
2010-11-18 09:42:34,978 [http-8080-1] ERROR errors.GrailsExceptionResolver?
09:35 Changeset [1163] by m.s.vanvliet@…
Wrong port + URL for metabolomics module was set in Bootstrap. Changed it …

17-11-10:

18:18 Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) closed by work@…
duplicate: duplicate of #185, closing…
18:05 Changeset [1162] by work@…
- resolves improvement #1, generating an assay id suggestion in the assay …
17:33 Changeset [1161] by work@…
- tried to reproduce issue #128 but it seems resolved, leaving nullable to …
17:31 Ticket #154 (Enhance template editor template field type chooser) closed by business@…
fixed: Great! I had to run the following query in the CI database to avoid …
17:26 Ticket #199 (enhance event table view) created by business@…
In the study overview, the events table can get quite cluttered up, see …
16:23 Changeset [1160] by robert@…
Removed printlns that were added for debugging
16:20 Changeset [1159] by robert@…
Improved the template editor so that template fields can be removed from …
14:32 Changeset [1158] by work@…
Automated continuous integration commit of minified JS/CSS
14:31 Changeset [1157] by robert@…
Removed unnecessary REST call from term editor
14:31 Changeset [1156] by robert@…
Updated ontology chooser to also return an NCBO id when no NCBO id is …
14:12 Changeset [1155] by work@…
- resolving issue #195, sample generation madness. This was partly caused …
12:07 Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) closed by work@…
fixed: setup trunk/tags/branches for each nmcdsp plugin in the grails-plugins …
11:52 Changeset [1154] by robert@…
Fixed exception when viewing the list of persons. See ticket #196.
11:34 Changeset [1153] by robert@…
Removed template field types INTEGER and FLOAT (since LONG and DOUBLE …
11:31 Ticket #198 (Error messages in study wizard should be more user friendly) created by robert@…
When you create or edit a study, and you fill in a wrong value for a …
10:45 Changeset [1152] by robert@…
Changed flash.error to flash.userError in the authentication part to …
10:44 Ticket #197 (User creation / approval process breaks the study wizard) closed by robert@…
fixed: I've changed it to flash.userError instead of flash.error. It's strange …

16-11-10:

20:34 Changeset [1151] by work@…
- removed my email address to prevent spambot hell
18:57 Ticket #99 (in study create wizard, after adding a number of species, the choices in ...) closed by work@…
worksforme: cannot reproduce... is probably already fixed
18:56 Ticket #94 (re-layout study create wizard, info boxes should stand out more and slider ...) closed by work@…
wontfix: I'm not sure if this feedback is valid anymore as it is months old... I'll …
18:48 Changeset [1150] by work@…
- resolves issue #180
18:30 Changeset [1149] by work@…
- resolving issue #197 where the study wizard breaks is flash.errors does …
18:27 Ticket #197 (User creation / approval process breaks the study wizard) created by work@…
Since #188 and #189 have been implemented, the account creation process …
17:50 Ticket #189 (Clean up unvalidated accounts & account creation) closed by work@…
fixed: Tested it except for the 3 days timeout and had a look at the change ( …
17:40 Ticket #188 (Implement rfc 2822 compliant email validation) closed by work@…
fixed: Yeah you're right, and it seems to work okay as well.. closing this issue.
16:47 Changeset [1148] by t.w.abma@…
- multiselect and add/remove added, only entity needs to be passed (todo)
15:47 Changeset [1147] by robert@…
Resolved exception with the RegisterCommand?
15:18 Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) closed by business@…
fixed: Cool! Added larger column width for sample names in [1146]. This works! …
15:16 Changeset [1146] by business@…
enlarge column width for sample name in study create/edit wizard
15:13 Changeset [1145] by work@…
- grom 0.2.0 has been published to the Grails repo, yay! Upgrading to grom …
14:57 Changeset [1144] by robert@…
Added an expiry date to the confirmation email for the user and …
14:39 Ticket #147 (Edit study wizard doesn't work anymore) closed by business@…
worksforme: Works again thanks to reverting to 1.3.4.
14:26 Ticket #196 (Error when viewing contacts) created by business@…
Choosing contacts > view persons in the menu …
14:24 Ticket #190 (Create Study seems to fail when saving, but reclicking next works) closed by business@…
duplicate: This is most likely a duplicate of #193.
14:14 Ticket #194 (Missing Samples in Create Study Wizard) closed by business@…
duplicate
13:22 Ticket #195 (Regenerate samples in study edit wizard after editing events) created by business@…
When someone edits a study in the study edit wizard, changing sampling …
11:47 Changeset [1143] by t.w.abma@…
- import wizard: fuzzy matching for column properties (step 2) implemented
10:43 Changeset [1142] by t.w.abma@…
- "go back" link not shown in the last step of the wizard, if no …
10:23 Ticket #194 (Missing Samples in Create Study Wizard) created by e.vansomeren@…
When creating a new study with the wizard, step 5 does not work properly, …

15-11-10:

23:56 Ticket #193 (Entering too long text results in unrecognizable error) created by e.vansomeren@…
While editing a study, I tried to fill in a study description that …
23:10 Changeset [1141] by t.w.abma@…
- added fuzzy matching to importer tag library
20:25 Changeset [1140] by t.w.abma@…
- added ability to add new ontologies in the "missing properties" step
16:05 Ticket #192 (Add Datatype user-extendible String list (as in ontology)) created by e.vansomeren@…
For many fields, the data manager wants the user to try to select from a …
15:57 Changeset [1139] by work@…
- fixed application.properties as it was committed with grails 1.3.5 and …
14:33 Ticket #191 (Include searchable Xrefs in Ontology terms (bv CAS for CHEBI)) created by e.vansomeren@…
CAS nr are a commonly used ID for compounds. So when looking for a …
13:36 Changeset [1138] by robert@…
Implemented ability to changed password and email address when logged in …
12:52 Changeset [1137] by t.w.abma@…
- missing properties added Add ontology…
11:51 Ticket #190 (Create Study seems to fail when saving, but reclicking next works) created by e.vansomeren@…
When creating a study, I get this error when it tries to save everything. …
11:44 Ticket #189 (Clean up unvalidated accounts & account creation) created by work@…
Currently, accounts need to be validated by clicking a confirmation link …
11:35 Ticket #188 (Implement rfc 2822 compliant email validation) created by work@…
Currently, email fields are not being checked throughout the application. …
11:22 Ticket #187 (Cannot add new term to NCI Thesaurus (Rat template, Strain field)) created by e.vansomeren@…
During study creation, I created subjects of Rat template. This template …
11:06 Changeset [1136] by robert@…
Improved template editor to show field details when a field is selected …
10:54 Ticket #186 (For a clean install in production mode, view a wizard for inserting ...) created by business@…
10:51 Ticket #185 (Set up an initial version of the 'getting started' wizard) created by work@…
Set up a 'getting started' wizard. On a clean installation of gscf the …
10:44 Ticket #184 (Unify GSCF module-side client with Michael) created by business@…
10:33 Ticket #183 (Rewrite #1 : rewrite ajaxified web flows into plugin) created by work@…
Ajaxified web flows are now being used among projects, which makes updates …
10:31 Ticket #182 (Implement the import wizard as a webflow) created by business@…
Stabilize
10:23 Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) closed by business@…
fixed
08:45 Ticket #181 (Delete study fails) created by e.vansomeren@…
When I try to delete a previously imported study, I get the message below. …

12-11-10:

18:08 Changeset [1135] by work@…
- updated dbnp vhosts -This line, and those below, will be ignored-- M …
18:05 Changeset [1134] by work@…
- check voor dbnpdemo instead of demo
15:51 Changeset [1133] by work@…
- it looks like an environment may not contain dashes?
15:31 Changeset [1132] by work@…
adding dbnp apache vhost configuration
15:31 Ticket #140 (Error when importing studies that have values that do not match a required ...) reopened by business@…
Actually there are still a number of things to be dealt with: * Right now, …
15:31 Changeset [1131] by work@…
removed obsolete files
15:10 Changeset [1130] by work@…
- changed nbx test and demo configurations to reflect dbnp.org domain …
15:01 Ticket #180 (Improve navigation structure) created by business@…
Right now, the navigation structure for editing/viewing/importing studies …
14:59 Changeset [1129] by work@…
- changed nbx test and demo configurations to reflect dbnp.org domain …
14:54 Ticket #179 (In template editor, add dropdown possibility of used fields) created by business@…
In the template editor (fields overview), when field on the right are in …
13:29 Changeset [1128] by work@…
- added demo instance introduction page
12:11 Changeset [1127] by work@…
- added demo configuration
12:08 Changeset [1126] by t.w.abma@…
- initial fuzzy logic incorporated in Importer service

11-11-10:

16:22 Ticket #178 (saveCorrectedCells breaks when importing a simple 3 column excel doc.) created by m.s.vanvliet@…
Grails Runtime Exception Error Details Error 500: Executing action …
16:05 Changeset [1125] by business@…
fix to avoid error message when trying to compare templates when none is …
14:59 Changeset [1124] by work@…
- improved deploy script
14:55 Changeset [1123] by work@…
- tiny word change
14:53 Changeset [1122] by t.w.abma@…
- preview fixed (sometimes didn't show all values read from Excel), now …
14:29 Changeset [1121] by t.w.abma@…
- rewrote part of the importer and added a ImportRecord? and ImportCell?
13:58 Changeset [1120] by work@…
- fixing springSecurityService issue in static methods
13:39 Changeset [1119] by work@…
- initial version of the setup assistant
12:18 Changeset [1118] by work@…
- cleaned up the Bootstrap

10-11-10:

17:13 Changeset [1117] by work@…
test.nmcdsp.org and ci.nmcdsp.org now also work and point to their …
12:50 Changeset [1116] by work@…
Tagging the 0.6.0 release of gscf.
12:47 Changeset [1115] by work@…
- finalized source to 0.6.0
12:30 Changeset [1114] by work@…
- added nbx14 config, we need a better solution to support multiple domain …
10:33 Changeset [1113] by work@…
some fixes / improvements in the deploy script
09:37 Changeset [1112] by adem.bilican@…
SimpleTox? exporter + ZIP file for multiple studies + error handling
09:35 Ticket #130 (SimpleTox exporter) closed by adem.bilican@…
fixed: Exporting as SimpleTox? works good : - EventGroup? properties missing (not …
00:25 Ticket #177 (Integrate importer into create study wizard) created by business@…
The importer should be integrated (via a popup, or transparently as …

09-11-10:

20:21 Ticket #175 (Move oauth plugin to grails plugins project) closed by t.w.abma@…
fixed: Moved.
19:01 Changeset [1111] by work@…
- removing debug lines that template field values are being set…
18:53 Changeset [1110] by work@…
- bootstrapping tried to insert duplicate ontologies…
18:37 Changeset [1109] by work@…
- instantiating messages are gone
18:35 Changeset [1108] by work@…
- instantiating messages go to debug loglevel
18:12 Changeset [1107] by work@…
- changed SAM url configuration - guys, bootstrap is a terrible mess... …
14:55 Changeset [1106] by work@…
- added environments used by build scripts (e.g. ci, test and www)
13:39 Ticket #176 (Unable to map samples for Pilot) reopened by t.w.abma@…
13:38 Ticket #176 (Unable to map samples for Pilot) closed by t.w.abma@…
worksforme: Tested it again here, but I cannot reproduce it here. If I have an Excel …
12:55 Changeset [1105] by work@…
- refactored ci script to allow other (test, www) deployments - refactored …
12:51 Changeset [1104] by work@…
revised virtual host configuration
10:19 Ticket #140 (Error when importing studies that have values that do not match a required ...) closed by t.w.abma@…
worksforme: Owner permission check was already there, but now when a Study is chosen …
10:14 Changeset [1103] by t.w.abma@…
- added error page for importer - empty ontologies detected in Excel still …
09:52 ScenarioEugene edited by e.vansomeren@…
(diff)
09:50 screenshot_SimpleImportWizard_UndeterminedOntologies.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? UndeterminedOntologies?
09:29 Changeset [1102] by business@…
fixed bug in confirmation step of wizard

08-11-10:

17:10 Changeset [1101] by m.s.vanvliet@…
Fixed the getSamples REST function. When with a sampleToken it returned an …
16:20 Ticket #176 (Unable to map samples for Pilot) created by m.s.vanvliet@…
When trying to map samples via an import I get this: …
15:34 ScenarioEugene edited by e.vansomeren@…
(diff)
15:27 ScenarioEugene edited by e.vansomeren@…
(diff)
15:24 screenshot_SimpleImportWizard_PropertiesColumns_deel2.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? Properties/Columns? deel2
15:24 ScenarioEugene edited by e.vansomeren@…
(diff)
15:19 ScenarioEugene edited by e.vansomeren@…
(diff)
15:18 screenshot_SimpleImportWizard_PropertiesColumns.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? Properties/Columns?
15:17 ScenarioEugene edited by e.vansomeren@…
(diff)
15:12 ScenarioEugene edited by e.vansomeren@…
(diff)
15:10 screenshot_SimpleImportWizard_SelectFile.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of SimpleImportWizard? SelectingFile?
15:09 ScenarioEugene edited by e.vansomeren@…
(diff)
15:02 ScenarioEugene edited by e.vansomeren@…
(diff)
15:00 ScenarioEugene edited by e.vansomeren@…
(diff)
14:56 ScenarioEugene edited by e.vansomeren@…
(diff)
14:56 ScenarioEugene edited by e.vansomeren@…
(diff)
14:55 ScenarioEugene edited by e.vansomeren@…
(diff)
14:53 ScenarioEugene edited by e.vansomeren@…
(diff)
14:51 ScenarioEugene edited by e.vansomeren@…
(diff)
14:34 ScenarioEugene edited by e.vansomeren@…
(diff)
14:20 screenshot_NTC_Experiment_test3_deel3.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part3, only right-most columns)
14:19 screenshot_NTC_Experiment_test3_deel2.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part2, only mid columns)
14:19 screenshot_NTC_Experiment_test3_deel1.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (part1, only left-most columns)
14:07 ScenarioEugene edited by e.vansomeren@…
(diff)
14:05 screenshot_NTCexptest3.PNG attached to ScenarioEugene by e.vansomeren@…
Screenshot of NTC Experiment test3 (only left-most columns)
13:59 NTC_Experiment_test3.xls attached to ScenarioEugene by e.vansomeren@…
Three mock NTC studies (from NTC Sharing) that should be importabel
13:55 ScenarioEugene created by business@…
12:53 Changeset [1100] by s.h.sikkema@…
Fixed 401 error
12:26 Changeset [1099] by s.h.sikkema@…
Authentication test
12:16 Changeset [1098] by s.h.sikkema@…
AuthenticationService? instantiated
12:08 Changeset [1097] by s.h.sikkema@…
A -> a
12:06 Changeset [1096] by s.h.sikkema@…
commented out authenticationservice in loadstudy method
10:59 Ticket #175 (Move oauth plugin to grails plugins project) created by business@…
10:57 Ticket #174 (Move plugins jumpbar and datatables to grails plugins project) created by business@…
10:54 Ticket #173 (Update specification of REST methods from modules to GSCF back) created by business@…
10:23 Ticket #137 (Error when comparing two studies in v0.5.0) closed by business@…
fixed
10:23 Ticket #133 (Implement module assay jump functionality) closed by business@…
fixed
10:21 Ticket #132 (Create a study generator page) closed by business@…
fixed
10:17 Ticket #131 (add/modify REST method which allows for getting metadata multiple samples) closed by business@…
fixed
10:16 Ticket #57 (enhance REST services) closed by business@…
worksforme

07-11-10:

22:57 Changeset [1095] by j.saito@…
Added access to template fields of Event and Subject in getSamples rest …
22:08 Changeset [1094] by j.saito@…
Added TemplateFields? to be returned in getSamples REST resource.

06-11-10:

16:01 Changeset [1093] by t.w.abma@…
- failed cells correction now implemented in an extra step which allows …

05-11-10:

21:11 Milestone 0.6 completed
Full implementation of Authentication and Authorization. This is a major …
21:02 Changeset [1092] by m.s.vanvliet@…
Pilot is user-aware adds a memu item Pilot
15:51 Changeset [1091] by work@…
- refactored and redesigned search page - bugfixed the build information …
13:12 Changeset [1090] by s.h.sikkema@…
oops, introduced a typo, now fixed
13:11 Changeset [1089] by s.h.sikkema@…
added xbean.jar
12:59 Changeset [1088] by s.h.sikkema@…
Upgraded poi xml libs to 3.7
12:43 Ticket #136 (Search study data does not work in v0.5.0) closed by business@…
worksforme: This should be fixed now.
11:55 Changeset [1087] by s.h.sikkema@…
Added xlsx import functionality

04-11-10:

17:33 Ticket #172 (tables of templates are not correctly shown in IE) created by jildau.bouwman@…
tables that are generated at the subject, event and samples step of the …
17:16 Changeset [1086] by work@…
- updated apache configuration
17:06 Ticket #171 (remove field from template) created by jildau.bouwman@…
Field cannot be removed from a template (even if the field is not used).
17:04 Changeset [1085] by work@…
- build info resized to the left
16:53 Changeset [1084] by work@…
- and another CSS fix
16:51 Ticket #170 (register for new account) created by jildau.bouwman@…
I created a new account, but used a none existing email-adres (jildau). …
16:49 Changeset [1083] by t.w.abma@…
- added logic for cleaning up 'failed cells' in the imported datamatrix
16:46 Changeset [1082] by work@…
- IE CSS bugfix
16:37 Ticket #169 (log in for view studies) created by jildau.bouwman@…
If you come on the GSCF website in login field is very small. Choosing …
16:28 Changeset [1081] by work@…
- updated CI script to support new build information
16:03 Changeset [1080] by work@…
- created a generic info template showing build, deploy and uptime …
14:13 Changeset [1079] by work@…
- add check tomcat script
12:25 Changeset [1078] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
12:23 Changeset [1077] by robert@…
Resolved bugs in adding ontology-template-fields to a template. See also …
12:00 Changeset [1076] by j.a.m.wesbeek@…
- removed grom from removed plugins…
11:58 Changeset [1075] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
11:35 Changeset [1074] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
11:34 Ticket #167 (Wizard sample page does not continue: Cannot invoke method giveFields() ...) closed by work@…
fixed: Resolved in r1073, please retest on ci instance…
11:33 Changeset [1073] by j.a.m.wesbeek@…
- resolves issue #167
11:12 Ticket #164 (Exception in create wizard when creating assay but no samples) closed by work@…
duplicate: This issue was also reported as duplicate issue #167, as the latter …
10:59 Ticket #158 (Create a remote logout call) closed by m.s.vanvliet@…
fixed
10:55 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by m.s.vanvliet@…
fixed
09:42 Ticket #168 (Import Study fails at Step 5: 0 out of 3 rows imported succesfully) created by e.vansomeren@…
I've tried to import studies using a simple excel sheet (attached). At …
09:37 Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) closed by work@…
invalid: Eugene, never reopen a ticket which has been resolved unless you are 100% …
09:36 Ticket #167 (Wizard sample page does not continue: Cannot invoke method giveFields() ...) created by work@…
When creating a study in the wizard, the wizard doest not continue to the …
09:26 Ticket #19 (saving new study impossible, navigating stops at tab 6.Samples) reopened by e.vansomeren@…
A very similar problem occurs again on  http://gscf.nmcdsp.org/ the …
00:02 Changeset [1072] by j.a.m.wesbeek@…
- disabled plugin debugging, seems like the grom issues have been resolved

03-11-10:

23:54 Changeset [1071] by j.a.m.wesbeek@…
- updated grom plugin to 0.1.15, this should now work properly on tomcat …
20:29 Changeset [1070] by t.w.abma@…
- ' failed cells' page form with ontology chooser implemented
20:28 Changeset [1069] by work@…
- improved grom windows support - updated grom version to 0.1.14 - added …
18:57 Changeset [1068] by j.a.m.wesbeek@…
- upgraded grom to 0.1.13 (improved growl for windows support)
17:57 Changeset [1067] by j.a.m.wesbeek@…
- authentication service was not defined in the loadStudy logic
17:31 Changeset [1066] by j.a.m.wesbeek@…
- initialize flash.errors in loadStudy logic
17:04 Changeset [1065] by business@…
changed page footer
16:58 Changeset [1064] by business@…
downgraded grails version to 1.3.4 to circumvent #147
16:53 Changeset [1063] by business@…
removed unnecessary text from home page in production version
16:30 Changeset [1062] by business@…
repaired menu item for Assay template editor
16:27 Changeset [1061] by business@…
updated ontology tests and deleted tests for REST methods that should be …
16:25 Ticket #84 (add ontologies chooser to template editor) reopened by business@…
At this point somehow it doesn't work any more. If I want to add an …
15:53 Ticket #166 (Automatically match column names to template field names in importer) created by business@…
It would be nice if the importer automatically would match e.g. column …
15:40 Ticket #165 (Ability to change user password) created by business@…
Right now I get a password emailed by the registration process, but how …
14:59 Changeset [1060] by t.w.abma@…
- updated POI library to 3.7 (2010-10-29 release) for handling Excel files
14:51 Changeset [1059] by t.w.abma@…
- only show own studies
14:26 Ticket #164 (Exception in create wizard when creating assay but no samples) created by business@…
When you specify no samples in the create study wizard, but you do add an …
14:05 Ticket #163 (After Import Study Data the new studies are not visible) closed by t.w.abma@…
worksforme: This should really be fixed now, the authenticated user is assigned to the …
14:03 Changeset [1058] by t.w.abma@…
- added failed cells view/logic - fixed Study-owner bug
13:58 Changeset [1057] by j.a.m.wesbeek@…
- upgraded grom to 0.1.12 (experimental windows support)
12:58 Changeset [1056] by robert@…
Changed template editor to be more user friendly with selecting field …
12:43 Ticket #163 (After Import Study Data the new studies are not visible) created by e.vansomeren@…
After importing study data GSCF says that x out of x rows/studies were …
11:45 Changeset [1055] by j.a.m.wesbeek@…
- reverted last dev commit…
11:43 Changeset [1054] by work@…
- fixed linux support - updated to 0.1.12
10:48 Changeset [1053] by robert@…
Fixed a bug in the remote logout call.
09:10 Changeset [1052] by adem.bilican@…
error on ExporterController?
08:48 Changeset [1051] by adem.bilican@…
error messages in ExporterController? for SimpleTox?

02-11-10:

16:48 Changeset [1050] by t.w.abma@…
- initial "failed cells" logic figured out, now extracts cells from the …
15:41 Changeset [1049] by m.s.vanvliet@…
Pilot almost there…
14:13 Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) closed by work@…
fixed: I have refactored the plugin to not use gant/ant. Because native command …
13:24 Changeset [1048] by j.a.m.wesbeek@…
- upgraded the grom plugin to 0.1.11, should fix the issues on tomcat
13:11 Ticket #162 (Add support for Office Excel 2007 Workbook format (.xlsx) files) created by business@…
Should be as easy as using this import: import …
13:06 Ticket #161 (GSCF Documentation) created by business@…
Write user documentation for GSCF, using a simple example study as guide.
11:15 Changeset [1047] by t.w.abma@…
- referer for now obtained via redirectTo param in the URL
11:01 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) reopened by m.s.vanvliet@…
The Referrer takes me back to STEP5 of the wizard... (before save), not …
10:25 Changeset [1046] by m.s.vanvliet@…
Update NMC Pilot pages
09:42 Changeset [1045] by t.w.abma@…
- temporary removed addition of failed cells to when using …

01-11-10:

21:42 Changeset [1044] by t.w.abma@…
- added record which contains failed columns, should be passed to an …
18:37 Changeset [1043] by j.a.m.wesbeek@…
- packaging Gant in the plugin seems to work, however now ant is …
18:30 Changeset [1042] by j.a.m.wesbeek@…
- upgraded grom to 0.1.9 to see if this works on tomcat
18:13 Changeset [1041] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
18:11 Changeset [1040] by j.a.m.wesbeek@…
- made column widths changeable by adding: …
17:14 Ticket #135 ([wizard] All data is returned in a random order) closed by work@…
fixed: works for me…
17:10 Changeset [1039] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
17:05 Changeset [1038] by j.a.m.wesbeek@…
- removed todo from confirmation page
17:04 Ticket #153 (Improve confirmation page of wizard) closed by work@…
fixed: improved the confirmation page in r1037
17:03 Changeset [1037] by j.a.m.wesbeek@…
- fixed issue #153, improved the confirmation page (removed dummy content …
16:49 Changeset [1036] by robert@…
Fixed the random order of templates in the study pages (#135) and created …
16:38 Changeset [1035] by adem.bilican@…
SimpleTox? exporter with file downloading system
16:18 Ticket #150 (Implement Sample.parentEventGroup) closed by work@…
fixed: - implemented in svn revision r:1034
16:17 Changeset [1034] by j.a.m.wesbeek@…
- implemented improvement #150 (  https://trac.nbic.nl/gscf/ticket/150 ), …
16:14 Changeset [1033] by j.a.m.wesbeek@…
- developmental and administration menu items are now icons to save top …
15:41 Changeset [1032] by j.a.m.wesbeek@…
- added the jquery-ui autocomplete html extention to the wizard
14:54 Changeset [1031] by robert@…
Bug in study comparison view fixed, so multiple studies can be compared
14:17 Changeset [1030] by robert@…
Extra check whether an owner has been added for a study, to prevent a …
13:17 Changeset [1029] by robert@…
Compare templates view updated.
12:48 Changeset [1028] by t.w.abma@…
- fixed NPE when empty cells were read from Excel and the property, added …
12:42 Changeset [1027] by robert@…
Implemented compare templates feature and fixed show studies overview …
12:35 Ticket #160 (Grom plugin breaks on tomcat when deployed as a war) created by work@…
On tomcat the plugin results in the following error: 2010-11-01 …
11:52 Changeset [1026] by j.a.m.wesbeek@…
- changed the CI script so that it works grails independently. This means …
11:40 Changeset [1025] by j.a.m.wesbeek@…
- forgot to remove one .grom() call…
11:30 Changeset [1024] by j.a.m.wesbeek@…
- removed the String.grom() calls as grom is not stable on tomcat: …
11:28 Changeset [1023] by j.a.m.wesbeek@…
- uninstall grom in ci build as it currently is unstable on tomcat
11:21 Changeset [1022] by j.a.m.wesbeek@…
* grom 0.1.8
10:07 Ticket #63 (importing subjects twice does not add information to existing subjects but ...) closed by t.w.abma@…
fixed: This should be fixed by now. There is being checked whether the entity …

29-10-10:

17:52 Changeset [1021] by j.a.m.wesbeek@…
- upgraded grom to 0.1.7
17:47 Changeset [1020] by j.a.m.wesbeek@…
- upgraded grom to 0.1.6
17:38 Changeset [1019] by j.a.m.wesbeek@…
- ci script should not remove the grom plugin as it extends the String …
17:34 Changeset [1018] by j.a.m.wesbeek@…
- upgraded grom plugin 0.1.5 as 0.1.4 breaks application on tomcat - …
12:56 Changeset [1017] by m.s.vanvliet@…
Fixed JSON Response of getAuthorizationLevel
12:48 Changeset [1016] by j.saito@…
Removed minor bug.
12:41 Changeset [1015] by j.a.m.wesbeek@…
- updating grom to 0.1.4 (Linux support)
11:15 Changeset [1014] by j.saito@…
Refactored AssayModule?.url to AssayModule?.consumer in all parts effected.

28-10-10:

20:05 Changeset [1013] by business@…
changed Ontology ncboId to unique, extended range of fulltext query
19:45 Changeset [1012] by j.a.m.wesbeek@…
- upgrading grom plugin to 1.1.3 - using String.grom() in bootstrap - in …
17:16 Changeset [1011] by j.saito@…
Ticket #57. Unified getStudy and getStudies. Note: Could not get …
16:39 Changeset [1010] by j.saito@…
Ticket #57 - Unified getAssays and getAssay. Also, added convenience …
16:29 Ticket #159 (Excel exporter) created by business@…
We need to implement the querying functionality as specified in the …
15:48 Changeset [1009] by s.h.sikkema@…
now really fixed backlink for jumpbar link
15:07 Changeset [1008] by s.h.sikkema@…
Upped jumpbar version and fixed backlink for jumpbar link
14:15 Changeset [1007] by j.a.m.wesbeek@…
- updated existing vhosts to reflect changes in domain naming - added new …
14:11 Ticket #158 (Create a remote logout call) created by m.s.vanvliet@…
At this moment I can Login a user via: …
10:52 Ticket #157 (Repair and test simple query wizard) created by business@…
Right now, the simple query wizard doesn't function properly and …
10:51 Ticket #156 (Repair full-text search) created by business@…
As of now, the full text search is hidden because it only searches on a …

27-10-10:

18:25 Ticket #61 (making a new template by extending an existing one ) closed by robert@…
fixed: I've added a clone template feature yesterday, and that will do the trick, …
17:57 Changeset [1006] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
17:56 Ticket #149 (termEditor autocomplete recently started escaping span elements in result ...) closed by work@…
fixed: Apparently the change to escape HTML was done by design and hence not a …
17:55 Changeset [1005] by j.a.m.wesbeek@…
resolves #149
16:58 Ticket #155 ('Show Studies' page needs to be re-developed) created by work@…
Currently the 'show studies' page is a huge legacy page and a total …
16:58 Ticket #80 (mark a whole row (all groups) in a template is not possible) closed by work@…
wontfix: I see what you mean, assigning one treatment to multiple groups at once. …
16:45 Ticket #64 (import wizard not accessible via create/edit study) closed by work@…
worksforme
16:45 Ticket #154 (Enhance template editor template field type chooser) created by business@…
Right now, the template field type chooser in the template editor contains …
16:39 Ticket #153 (Improve confirmation page of wizard) created by business@…
On the confirmation page of the study create wizard, there are some bogus …
16:38 Ticket #58 (template cannot be added or modified) closed by work@…
duplicate: duplicate to #60
16:34 Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) created by business@…
In the study create/edit wizard, when the samples are generated, it's hard …
16:15 Ticket #65 (DOB subjects with stringlist only from the year 2000 on and later) closed by work@…
fixed: Resolved in #1003. It now shows -80 and +20 years relative to the current …
16:15 Changeset [1004] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:13 Changeset [1003] by j.a.m.wesbeek@…
resolves #65, datetime picker showing only -10 + 10 years in select
16:04 Ticket #151 (Database administration) created by business@…
At the moment, any user that obtains a login is able to add new studies. …
15:50 Changeset [1002] by t.w.abma@…
- added functionality to check for existing entities when importing from …
15:29 Changeset [1001] by j.saito@…
Ticket 57. Merged getSample and getSamples into one REST resource. …
14:54 Ticket #127 (take into account ontology versioning, make more use of Ontocat) reopened by business@…
14:38 Changeset [1000] by adem.bilican@…
first version for a SimpleTox? Exporter : go to Studies > Export as …
14:27 Ticket #140 (Error when importing studies that have values that do not match a required ...) reopened by business@…
Eugene to Tjeerd (in Dutch): "Bedankt voor je aandacht aan dit probleem. …
12:21 Changeset [999] by t.w.abma@…
- fixed constraint violation error by adding parent to the entities
09:55 Ticket #150 (Implement Sample.parentEventGroup) created by business@…
Store Sample.parentEventGroup (add as nullable property to domain class) …

26-10-10:

17:08 Ticket #149 (termEditor autocomplete recently started escaping span elements in result ...) created by work@…
probably related to the recent upgrade of the jquery plugin and the …
17:03 Changeset [998] by j.a.m.wesbeek@…
- removed the identifiers from the wizard views
16:35 Ticket #127 (take into account ontology versioning, make more use of Ontocat) closed by work@…
fixed: Resolved in svn #997. Resolution: before adding a new ontology, a lookup …
16:33 Changeset [997] by j.a.m.wesbeek@…
- resolved issue #127 (  https://trac.nbic.nl/gscf/ticket/127 ): new terms …
15:19 Changeset [996] by robert@…
Implemented clone feature in template editor (ticket #6), added a rest …
15:03 Ticket #6 (clone feature) closed by robert@…
fixed: Clone feature is added to the original template editor, and the …
14:53 Changeset [995] by s.h.sikkema@…
Added jumpbar again
14:47 Changeset [994] by s.h.sikkema@…
Removed extra view table cell from assay table
14:38 Ticket #140 (Error when importing studies that have values that do not match a required ...) closed by t.w.abma@…
fixed: Fixed this exception which came when trying to import data which cannot be …
14:36 Changeset [993] by t.w.abma@…
- fixed exception which came when trying to import data which cannot be …
13:20 Ticket #14 ((re)ordering template fields doesn't work perfect) closed by robert@…
fixed: #1 was a bug, that's fixed. #2 was because the fields are reordered using …
12:54 Changeset [992] by j.a.m.wesbeek@…
- removed logfile - set all logfiles to ignore
12:44 Ticket #79 (preview of columns in simple import wizard) closed by t.w.abma@…
fixed: Old ticket, but this was implemented already a while ago. At least step …
11:46 Ticket #118 (Implement Authorization and Authentication) closed by robert@…
fixed: THis is added to the trunk. The authentication is done without oauth for …
11:31 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by t.w.abma@…
fixed: First call of the importer the referrer is stored in a session and in the …

25-10-10:

17:25 Ticket #36 (naming groups on template impossible) closed by business@…
fixed
17:21 Ticket #146 (Presentation mode of dbnp.org misses information on page 2 and 3) closed by business@…
fixed: This is now solved.
17:08 Ticket #145 (Running GSCF demo as frame inside http://dbnp.org causes inconvenient lack ...) closed by business@…
fixed: Solved by putting a direct link to the demo on dbnp.org.
17:04 Ticket #142 (Edit/create study template should be available directly from main menu) closed by business@…
duplicate: Duplicate of #7
16:32 Changeset [991] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:30 Changeset [990] by robert@…
Fixed bug #21: error when adding a person to a study without selecting a …
16:29 Ticket #21 (adding a contact without selecting a role seems possible, but results in ...) closed by robert@…
fixed: The script now checks whether a person and a role have been selected …
16:29 Changeset [989] by t.w.abma@…
- added referer to the last step of the wizard
16:25 Changeset [988] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:23 Changeset [987] by robert@…
Fixed bug #15
16:21 Ticket #15 (not possible to fill in affiliations) closed by robert@…
fixed: I've added a link to the 'affiliation-manager-screen' to - the screen …
16:07 Ticket #95 (ApoE3Leiden muis is niet in de strain ontology) closed by business@…
worksforme: Gebruik de Black Six strain en specificeer ApoE3Leiden by Genotype (wat …
16:07 Ticket #50 (storing TEXT fields does not work in production environment) closed by business@…
This depends on  http://jira.codehaus.org/browse/GRAILS-6754 being solved. …
15:56 Changeset [986] by robert@…
Added plugin famfamfam again
15:28 Changeset [985] by robert@…
Removed spring-security-ui plugin to decrease dependencies. The …
12:46 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) created by m.s.vanvliet@…
Can you make the importer to redirect to the place where you left of when …
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