Timeline


and

29-10-10:

17:52 Changeset [1021] by j.a.m.wesbeek@…
- upgraded grom to 0.1.7
17:47 Changeset [1020] by j.a.m.wesbeek@…
- upgraded grom to 0.1.6
17:38 Changeset [1019] by j.a.m.wesbeek@…
- ci script should not remove the grom plugin as it extends the String …
17:34 Changeset [1018] by j.a.m.wesbeek@…
- upgraded grom plugin 0.1.5 as 0.1.4 breaks application on tomcat - …
12:56 Changeset [1017] by m.s.vanvliet@…
Fixed JSON Response of getAuthorizationLevel
12:48 Changeset [1016] by j.saito@…
Removed minor bug.
12:41 Changeset [1015] by j.a.m.wesbeek@…
- updating grom to 0.1.4 (Linux support)
11:15 Changeset [1014] by j.saito@…
Refactored AssayModule?.url to AssayModule?.consumer in all parts effected.

28-10-10:

20:05 Changeset [1013] by business@…
changed Ontology ncboId to unique, extended range of fulltext query
19:45 Changeset [1012] by j.a.m.wesbeek@…
- upgrading grom plugin to 1.1.3 - using String.grom() in bootstrap - in …
17:16 Changeset [1011] by j.saito@…
Ticket #57. Unified getStudy and getStudies. Note: Could not get …
16:39 Changeset [1010] by j.saito@…
Ticket #57 - Unified getAssays and getAssay. Also, added convenience …
16:29 Ticket #159 (Excel exporter) created by business@…
We need to implement the querying functionality as specified in the …
15:48 Changeset [1009] by s.h.sikkema@…
now really fixed backlink for jumpbar link
15:07 Changeset [1008] by s.h.sikkema@…
Upped jumpbar version and fixed backlink for jumpbar link
14:15 Changeset [1007] by j.a.m.wesbeek@…
- updated existing vhosts to reflect changes in domain naming - added new …
14:11 Ticket #158 (Create a remote logout call) created by m.s.vanvliet@…
At this moment I can Login a user via: …
10:52 Ticket #157 (Repair and test simple query wizard) created by business@…
Right now, the simple query wizard doesn't function properly and …
10:51 Ticket #156 (Repair full-text search) created by business@…
As of now, the full text search is hidden because it only searches on a …

27-10-10:

18:25 Ticket #61 (making a new template by extending an existing one ) closed by robert@…
fixed: I've added a clone template feature yesterday, and that will do the trick, …
17:57 Changeset [1006] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
17:56 Ticket #149 (termEditor autocomplete recently started escaping span elements in result ...) closed by work@…
fixed: Apparently the change to escape HTML was done by design and hence not a …
17:55 Changeset [1005] by j.a.m.wesbeek@…
resolves #149
16:58 Ticket #155 ('Show Studies' page needs to be re-developed) created by work@…
Currently the 'show studies' page is a huge legacy page and a total …
16:58 Ticket #80 (mark a whole row (all groups) in a template is not possible) closed by work@…
wontfix: I see what you mean, assigning one treatment to multiple groups at once. …
16:45 Ticket #64 (import wizard not accessible via create/edit study) closed by work@…
worksforme
16:45 Ticket #154 (Enhance template editor template field type chooser) created by business@…
Right now, the template field type chooser in the template editor contains …
16:39 Ticket #153 (Improve confirmation page of wizard) created by business@…
On the confirmation page of the study create wizard, there are some bogus …
16:38 Ticket #58 (template cannot be added or modified) closed by work@…
duplicate: duplicate to #60
16:34 Ticket #152 (clarify sample generation / adjust column widths in study create/edit ...) created by business@…
In the study create/edit wizard, when the samples are generated, it's hard …
16:15 Ticket #65 (DOB subjects with stringlist only from the year 2000 on and later) closed by work@…
fixed: Resolved in #1003. It now shows -80 and +20 years relative to the current …
16:15 Changeset [1004] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:13 Changeset [1003] by j.a.m.wesbeek@…
resolves #65, datetime picker showing only -10 + 10 years in select
16:04 Ticket #151 (Database administration) created by business@…
At the moment, any user that obtains a login is able to add new studies. …
15:50 Changeset [1002] by t.w.abma@…
- added functionality to check for existing entities when importing from …
15:29 Changeset [1001] by j.saito@…
Ticket 57. Merged getSample and getSamples into one REST resource. …
14:54 Ticket #127 (take into account ontology versioning, make more use of Ontocat) reopened by business@…
14:38 Changeset [1000] by adem.bilican@…
first version for a SimpleTox? Exporter : go to Studies > Export as …
14:27 Ticket #140 (Error when importing studies that have values that do not match a required ...) reopened by business@…
Eugene to Tjeerd (in Dutch): "Bedankt voor je aandacht aan dit probleem. …
12:21 Changeset [999] by t.w.abma@…
- fixed constraint violation error by adding parent to the entities
09:55 Ticket #150 (Implement Sample.parentEventGroup) created by business@…
Store Sample.parentEventGroup (add as nullable property to domain class) …

26-10-10:

17:08 Ticket #149 (termEditor autocomplete recently started escaping span elements in result ...) created by work@…
probably related to the recent upgrade of the jquery plugin and the …
17:03 Changeset [998] by j.a.m.wesbeek@…
- removed the identifiers from the wizard views
16:35 Ticket #127 (take into account ontology versioning, make more use of Ontocat) closed by work@…
fixed: Resolved in svn #997. Resolution: before adding a new ontology, a lookup …
16:33 Changeset [997] by j.a.m.wesbeek@…
- resolved issue #127 (  https://trac.nbic.nl/gscf/ticket/127 ): new terms …
15:19 Changeset [996] by robert@…
Implemented clone feature in template editor (ticket #6), added a rest …
15:03 Ticket #6 (clone feature) closed by robert@…
fixed: Clone feature is added to the original template editor, and the …
14:53 Changeset [995] by s.h.sikkema@…
Added jumpbar again
14:47 Changeset [994] by s.h.sikkema@…
Removed extra view table cell from assay table
14:38 Ticket #140 (Error when importing studies that have values that do not match a required ...) closed by t.w.abma@…
fixed: Fixed this exception which came when trying to import data which cannot be …
14:36 Changeset [993] by t.w.abma@…
- fixed exception which came when trying to import data which cannot be …
13:20 Ticket #14 ((re)ordering template fields doesn't work perfect) closed by robert@…
fixed: #1 was a bug, that's fixed. #2 was because the fields are reordered using …
12:54 Changeset [992] by j.a.m.wesbeek@…
- removed logfile - set all logfiles to ignore
12:44 Ticket #79 (preview of columns in simple import wizard) closed by t.w.abma@…
fixed: Old ticket, but this was implemented already a while ago. At least step …
11:46 Ticket #118 (Implement Authorization and Authentication) closed by robert@…
fixed: THis is added to the trunk. The authentication is done without oauth for …
11:31 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) closed by t.w.abma@…
fixed: First call of the importer the referrer is stored in a session and in the …

25-10-10:

17:25 Ticket #36 (naming groups on template impossible) closed by business@…
fixed
17:21 Ticket #146 (Presentation mode of dbnp.org misses information on page 2 and 3) closed by business@…
fixed: This is now solved.
17:08 Ticket #145 (Running GSCF demo as frame inside http://dbnp.org causes inconvenient lack ...) closed by business@…
fixed: Solved by putting a direct link to the demo on dbnp.org.
17:04 Ticket #142 (Edit/create study template should be available directly from main menu) closed by business@…
duplicate: Duplicate of #7
16:32 Changeset [991] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:30 Changeset [990] by robert@…
Fixed bug #21: error when adding a person to a study without selecting a …
16:29 Ticket #21 (adding a contact without selecting a role seems possible, but results in ...) closed by robert@…
fixed: The script now checks whether a person and a role have been selected …
16:29 Changeset [989] by t.w.abma@…
- added referer to the last step of the wizard
16:25 Changeset [988] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:23 Changeset [987] by robert@…
Fixed bug #15
16:21 Ticket #15 (not possible to fill in affiliations) closed by robert@…
fixed: I've added a link to the 'affiliation-manager-screen' to - the screen …
16:07 Ticket #95 (ApoE3Leiden muis is niet in de strain ontology) closed by business@…
worksforme: Gebruik de Black Six strain en specificeer ApoE3Leiden by Genotype (wat …
16:07 Ticket #50 (storing TEXT fields does not work in production environment) closed by business@…
This depends on  http://jira.codehaus.org/browse/GRAILS-6754 being solved. …
15:56 Changeset [986] by robert@…
Added plugin famfamfam again
15:28 Changeset [985] by robert@…
Removed spring-security-ui plugin to decrease dependencies. The …
12:46 Ticket #148 (Import - Store referrer to continue where you were when going to the ...) created by m.s.vanvliet@…
Can you make the importer to redirect to the place where you left of when …

22-10-10:

16:52 Changeset [984] by robert@…
Using the login panel for logging in, instead of the ugly …
16:18 Changeset [983] by robert@…
New type of authentication and authorization added to the rest controller. …
14:27 Ticket #98 (selecting multiple subjects in study create wizard works very bad) closed by j.a.m.wesbeek@…
worksforme
13:25 Changeset [982] by business@…
updated study show to also display parent event and subject of a sample
13:14 Changeset [981] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
13:12 Changeset [980] by j.a.m.wesbeek@…
- rewrote the css, javascript and views to use the famfamfam plugin …
12:38 Changeset [979] by j.a.m.wesbeek@…
- again remove nadd-neutralizer - reverted the jquery downgrade caused by …
12:19 Changeset [978] by j.a.m.wesbeek@…
- fixed indentation

21-10-10:

18:52 Ticket #147 (Edit study wizard doesn't work anymore) created by business@…
Since Grails 1.3.5, the edit study wizard stops functioning after the …
17:30 Changeset [977] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
17:28 Changeset [976] by robert@…
Authentication and authorization for studies is added, according to ticket …
16:53 Changeset [975] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:51 Changeset [974] by j.a.m.wesbeek@…
- removed the 'required' keyword from the Study's domainFields for the …
16:42 Changeset [973] by j.a.m.wesbeek@…
Automated continuous integration commit of minified JS/CSS
16:40 Ticket #146 (Presentation mode of dbnp.org misses information on page 2 and 3) created by e.vansomeren@…
On the dbno.org site, home page a link is available: "Also available in …
16:40 Changeset [972] by j.a.m.wesbeek@…
- and hibernate and tomcat were also wrong version - added revision …
16:39 Changeset [971] by s.h.sikkema@…
Included jumpbar plugin again
16:36 Changeset [970] by j.a.m.wesbeek@…
- version was changed to 1.3.4, changed it back to grails 1.3.5
16:35 Ticket #145 (Running GSCF demo as frame inside http://dbnp.org causes inconvenient lack ...) created by e.vansomeren@…
When on dbnp.org and clicking demo, GSCF is run as a frame inside website, …
16:35 Changeset [969] by j.a.m.wesbeek@…
- changed feedback behaviour - added a beta image
16:28 Ticket #144 (Improve GSCF to work with large numbers (e.g. searchboxes instead of ...) created by e.vansomeren@…
Dropdown of contacts will be problematic when there are > 50 contacts in …
16:23 Changeset [968] by s.h.sikkema@…
Included jumpbar plugin
16:23 Ticket #143 (Import Contacts) created by e.vansomeren@…
Besides study data, it would be very convenient to allow the import of …
16:18 Ticket #142 (Edit/create study template should be available directly from main menu) created by e.vansomeren@…
Currently you can only edit/create a study template when creating/editing …
16:13 Changeset [967] by business@…
added Study 'published' field to domainFields
16:12 Ticket #141 (Explain prefix for creating contacts) created by e.vansomeren@…
The term prefix is not always clear. Please give hint, e.g. "van" in case …
16:09 Ticket #140 (Error when importing studies that have values that do not match a required ...) created by e.vansomeren@…
I've created the NTC study template 2 that contains a field "Sample …
16:00 Ticket #139 (When importing only information about the study itself using simple ...) created by e.vansomeren@…
When importing only information about the study itself using simple …
15:59 Ticket #138 (Implement study quality criteria for publication) created by business@…
A study should only be published if it meets certain criteria: * It …
15:54 Changeset [966] by business@…
also added assays check in Study.deleteEventGroup, added test to check …
15:51 Ticket #137 (Error when comparing two studies in v0.5.0) created by e.vansomeren@…
When viewing studies. Select first two studies and press "compare selected …
15:44 Ticket #136 (Search study data does not work in v0.5.0) created by e.vansomeren@…
Searching for studies doesn't work. For example, "PPS" results in no …
15:38 Changeset [965] by business@…
fix Study.deleteEventGroup to correctly delete samples (still TODO: …
15:04 Changeset [964] by business@…
changed SampleTests? to comply with parentEvent being nullable, delete via …
14:49 Changeset [963] by business@…
added parentStudyToken to getAssay REST call
13:17 Changeset [962] by j.a.m.wesbeek@…
- assay page in the wizard did not properly displayed the required fields …
12:42 Changeset [961] by t.w.abma@…
- removed Entity references completely and removed display of members in …
12:24 Changeset [960] by business@…
changed parentEvent in Sample to nullable. Please make sure that any code …

20-10-10:

21:13 Changeset [959] by j.a.m.wesbeek@…
- set keyword expansion
20:45 Changeset [958] by root
test for properties
19:14 Changeset [957] by j.a.m.wesbeek@…
- fixed the continuous integration script which was broken on previous …
18:30 Changeset [956] by j.a.m.wesbeek@…
- added jquery-ui 1.8.5 css / images
18:29 Changeset [955] by j.a.m.wesbeek@…
- removed jquery-ui 1.8.2 css / images
18:27 Changeset [954] by j.a.m.wesbeek@…
- upgraded webflow plugin - upgraded jquery - removed jquery-ui 1.8.2 - …
18:16 Ticket #125 (Issue warning when no events are assigned to EventGroups or samples to ...) closed by j.a.m.wesbeek@…
fixed: resolved in svn #953, added a warning page to the wizard whenever a …
18:16 Changeset [953] by j.a.m.wesbeek@…
- resolved issue #125 (  https://trac.nbic.nl/gscf/ticket/125 ); introduced …
17:39 Changeset [952] by j.a.m.wesbeek@…
- fixed references to handleSamples() which should have been samplePage()
17:30 Ticket #124 (add new events to a stored study does not work) closed by j.a.m.wesbeek@…
duplicate: duplicate to #2
17:25 Ticket #135 ([wizard] All data is returned in a random order) created by j.a.m.wesbeek@…
Currently, all data on pages is randomized. For example, subjects, events, …
17:22 Ticket #123 (order of samples in assay tab) closed by j.a.m.wesbeek@…
wontfix: currently everything is randomized in the wizard pages, so this is not an …
16:51 Ticket #2 (new sample events are not added to sample list) closed by j.a.m.wesbeek@…
fixed: resolved in svn #951 Samples were generated once upon entering the …
16:48 Changeset [951] by j.a.m.wesbeek@…
- resolved #2 ( https://trac.nbic.nl/gscf/ticket/2): "new samples are not …
15:54 Changeset [950] by j.a.m.wesbeek@…
- Tjeerd change broke the wizard, reverted... (should probably work fine …
12:20 Changeset [949] by j.a.m.wesbeek@…
- removed nadd-neutralizer - added grom-1.1.2

19-10-10:

16:06 Ticket #20 (save of subjects does not work) closed by business@…
14:19 Changeset [948] by business@…
corrected errors introduced in #944, metabolomics module in development …
11:55 Changeset [947] by m.s.vanvliet@…
Initial NMC-DSP/GSCF Pilot page
11:36 Ticket #107 (Adjust validate() in TemplateEntity to also check template field value ...) closed by business@…
fixed
10:44 WikiStart edited by business@…
(diff)
10:43 WikiStart edited by business@…
(diff)
10:03 Ticket #134 (Convenience URLs to expose to modules - e.g. importing samples for a ...) created by business@…
To make it more easy for modules to link directly to for example the …

18-10-10:

17:54 Ticket #133 (Implement module assay jump functionality) created by business@…
In the study/show code, in the Assays tab, update the link to work with …
16:39 Ticket #132 (Create a study generator page) created by business@…
Insert a new menu item in GSCF under Studies: 'Generate new studies'. You …
15:44 Ticket #131 (add/modify REST method which allows for getting metadata multiple samples) created by business@…
Currently, for getting information about samples, there only exist two …
14:43 Changeset [946] by j.a.m.wesbeek@…
* upgraded project to Grails 1.3.5

14-10-10:

19:57 Changeset [945] by j.saito@…
Sorted out sources for null-pointer exceptions.
18:06 Ticket #130 (SimpleTox exporter) created by business@…
We need a SimpleTox? exporter to get metadata into ArrayTrack?. This is an …
17:44 Changeset [944] by j.saito@…
Slightly modified Bootstrap for TEST_ENV.
16:34 Changeset [943] by t.w.abma@…
- new version of AAA-plugin
13:06 Changeset [942] by business@…
added a showByToken for assays, updated generated assay view
12:23 Changeset [941] by business@…
added a showByToken action to the study controller
11:05 Ticket #129 (Javascript error) created by business@…
JavaScript? error on the nbx3 instance in study/show/25 if you go to Events …

13-10-10:

15:43 Ticket #128 (exception after defining a study, cannot save the study) created by business@…
When creating a study with some generated samples, a popup box is shown …
15:40 Ticket #127 (take into account ontology versioning, make more use of Ontocat) created by business@…
Problem that originally raised versioning: When I click add more... to add …
15:37 Ticket #126 (exception after importing subjects sheet) created by business@…
After importing the example subjects sheet, I got an error: …

12-10-10:

16:17 Changeset [940] by t.w.abma@…
- REST-controller should return correct authorization level back
12:19 Changeset [939] by t.w.abma@…
- added SpringSecurity? 'admin' and 'test' user to the bootstrap
12:11 Changeset [938] by t.w.abma@…
- GSCF working with AAAA-plugin, removed Melody-plugin which gave …
11:22 Changeset [937] by t.w.abma@…
- fixed (hopefully) integrity contraints error

11-10-10:

22:23 Changeset [936] by t.w.abma@…
- Nimble removed, AAAA-plugin installed (based on Spring Security), login …
12:48 Changeset [935] by j.saito@…
Added dummy REST resource for getAuthorizationLevel.

08-10-10:

16:02 WikiStart edited by business@…
(diff)
15:43 Ticket #125 (Issue warning when no events are assigned to EventGroups or samples to ...) created by business@…
When a sampling event is not assigned to any EventGroup?, no samples will …
14:47 Changeset [934] by j.saito@…
Adjusted CommunicationManager? to match closer with CommunicationManager? in …
14:41 Ticket #124 (add new events to a stored study does not work) created by jildau.bouwman@…
If a study is already stored and smaples automatically created from the …
14:37 Ticket #123 (order of samples in assay tab) created by jildau.bouwman@…
in the study capture tab assays, the samples seem to be randomly ordered. …
13:56 Ticket #122 (test) closed by support@…
fixed
13:44 Ticket #122 (test) created by support@…
13:31 WikiStart edited by support@…
(diff)

07-10-10:

13:08 Changeset [933] by business@…
fixed a bug in the belongsToGroup functions in Event and SamplingEvent?
10:51 Changeset [932] by j.a.m.wesbeek@…
- Added GSCF-specific check for the Config.groovy patch

06-10-10:

10:52 Changeset [931] by t.w.abma@…
- Configuration dummy update to trigger rebuild
10:43 Changeset [930] by t.w.abma@…
- Configuration dummy update to trigger rebuild
10:30 Changeset [929] by t.w.abma@…
- Configuration dummy update to trigger rebuild
10:22 Changeset [928] by t.w.abma@…
- Configuration dummy update to trigger rebuild
10:03 Changeset [927] by t.w.abma@…
- Configuration dummy update to trigger rebuild
08:47 TracFastCgi created by trac
08:47 InterMapTxt created by trac
08:47 CamelCase created by trac
08:47 TracWiki created by trac
08:47 WikiHtml created by trac
08:47 WikiProcessors created by trac
08:47 WikiFormatting created by trac
08:47 TracAccessibility created by trac
08:47 TracTimeline created by trac
08:47 TracAdmin created by trac
08:47 WikiMacros created by trac
08:47 TracPlugins created by trac
08:47 TracBrowser created by trac
08:47 TracBackup created by trac
08:47 SandBox created by trac
08:47 TracIni created by trac
08:47 WikiRestructuredText created by trac
08:47 PageTemplates created by trac
08:47 TracLogging created by trac
08:47 TracUpgrade created by trac
08:47 WikiNewPage created by trac
08:47 TracSyntaxColoring created by trac
08:47 WikiPageNames created by trac
08:47 TracSearch created by trac
08:47 TitleIndex created by trac
08:47 TracChangeset created by trac
08:47 TracWorkflow created by trac
08:47 TracSupport created by trac
08:47 TracInterfaceCustomization created by trac
08:47 TracTicketsCustomFields created by trac
08:47 TracUnicode created by trac
08:47 TracRevisionLog created by trac
08:47 TracReports created by trac
08:47 TracModWSGI created by trac
08:47 TracGuide created by trac
08:47 TracImport created by trac
08:47 TracRss created by trac
08:47 TracTickets created by trac
08:47 TracPermissions created by trac
08:47 TracNotification created by trac
08:47 TracStandalone created by trac
08:47 WikiDeletePage created by trac
08:47 TracQuery created by trac
08:47 TracInstall created by trac
08:47 TracEnvironment created by trac
08:47 TracRoadmap created by trac
08:47 WikiRestructuredTextLinks created by trac
08:47 InterWiki created by trac
08:47 InterTrac created by trac
08:47 TracCgi created by trac
08:47 RecentChanges created by trac
08:47 TracFineGrainedPermissions created by trac
08:47 TracLinks created by trac
08:47 TracNavigation created by trac
08:47 TracModPython created by trac
08:47 WikiStart created by trac

05-10-10:

11:32 Changeset [926] by tabma
- Sandbox update to OAuth
11:27 Changeset [925] by tabma
- Sandbox update to OAuth
11:18 Changeset [924] by tabma
- Sandbox update to OAuth
11:10 Changeset [923] by tabma
- Sandbox update to OAuth
10:25 Changeset [922] by tabma
- Configuration dummy submit
10:21 Changeset [921] by tabma
- Configuration dummy submit
09:52 Changeset [920] by tabma
- Configuration dummy submit

04-10-10:

18:56 Changeset [919] by tabma
- added oauth method to Sandbox-controller to test
16:59 Changeset [918] by tabma
- added oauth method to Sandbox-controller to test
16:10 Changeset [917] by tabma
Added OAuth key and secret patch
16:08 Changeset [916] by tabma
15:55 Changeset [915] by tabma
- added production server URL (used by the OAuth-plugin for Grails) to …
15:47 Changeset [914] by tabma
- fixed OAuth tag for the index page
15:24 Changeset [913] by tabma
- fixed OAuth tag for the index page
14:49 Changeset [912] by tabma
- fixed OAuth tag for the index page
14:34 Changeset [911] by tabma
- fixed OAuth tag for the index page
12:20 Changeset [910] by tabma
-added Authorization-method to REST-controller
12:16 Changeset [909] by tabma
-added Authorization-method to REST-controller
12:09 Changeset [908] by tabma
-added Authorization-method to REST-controller
11:20 Changeset [907] by tabma
- added OAuth-link to index page of GSCF
11:10 Changeset [906] by tabma
-changed name to sampleToken in GetSamples? REST-call
11:05 Changeset [905] by tabma
- added OAauth plugin and Configuration variables (keys should be added …

01-10-10:

11:46 Changeset [904] by jahn
Adjusted to new covention of using '...Token' instead of 'extenal...ID'.

30-09-10:

15:35 Changeset [903] by keesvb
Changed JSON name for study title to title in getStudies REST method
Note: See TracTimeline for information about the timeline view.