Timeline


and

Jun 21, 2010:

11:24 AM Changeset [598] by duh
- improved ontology chooser, pressing the backspace also hides the …
11:20 AM Changeset [597] by duh
- improved ontology chooser -- the button (showHide element) did not …
11:10 AM Changeset [596] by duh
- removed debug line
11:09 AM Changeset [595] by duh
- binding to window events resulted in strange behaviour
8:42 AM Changeset [594] by vinlud
Dynamic simple Assays tab

Jun 19, 2010:

10:31 AM Changeset [593] by duh
- create study in study overview now links directly into the study …

Jun 18, 2010:

6:19 PM Changeset [592] by duh
- resolves issue # 107
5:27 PM Changeset [591] by duh
- spinner fix
5:20 PM Changeset [590] by duh
- small css improvement for term editor
4:51 PM Changeset [589] by duh
- removed debug line cluttering the catalina.out tomcat output…
4:41 PM Changeset [588] by duh
- general improvements to the termEditor -- feedback is more clear …
3:08 PM Ticket #76 (update ontology descriptors + exchange templates via XML or RDF) created by kees.vanbochove@…
It would be really nice if we could exchange templates via XML/RDF. We …
2:56 PM Ticket #77 (nicer error message when adding a term in de termselector that already ...) created by kees.vanbochove@…
If you use the term editor (add more... of a certain ONTOLOGYTERM …
2:31 PM Ticket #21 (adding a contact without selecting a role seems possible, but results ...) created by kees.vanbochove@…
If you add a study contact in the study create or edit wizard without …
1:02 PM Changeset [587] by duh
- removed debug line
12:50 PM Changeset [586] by duh
- and changed version to 0.3.2
12:49 PM Changeset [585] by duh
- fixed issue with the wizard not working on Apache Tomcat production …
11:39 AM Changeset [584] by duh
- small fix
11:14 AM Changeset [583] by duh
dev commit
10:48 AM Ticket #22 (create new study / edit study do not work after edit attempt) created by leny.vanwijk@…
I tried to edit the insulin resistance study. Adding a contact person …

Jun 17, 2010:

6:17 PM Changeset [582] by duh
- improved handeling of incoming requests
3:46 PM Changeset [581] by duh
- the WAR did not run on Apache Tomcat 6.0.26 on Gentoo Linux because …
3:30 PM Changeset [580] by keesvb
typing error in last commit
3:06 PM Changeset [579] by keesvb
clarified display of RELTIME to show 0s when time = 0
2:57 PM Changeset [578] by duh
- added logic to immediately edit or create a study (and hence skip …
2:39 PM Ticket #23 (deleting the last subject of a template in study edit wizard causes an ...) created by kees.vanbochove@…
If the last subject of a certain template is deleted in the study edit …
11:20 AM Changeset [577] by keesvb
reverted outcomment from #574 which caused bug #116
10:44 AM Ticket #24 (editing events is suddenly impossible) created by kees.vanbochove@…
In the study create and edit wizard, it is suddenly (#576) impossible …
10:27 AM Ticket #25 (edit link in study show does not work) created by kees.vanbochove@…
If you click edit in study/show, you get an error: HTTP Status 404 - …

Jun 16, 2010:

5:06 PM Changeset [576] by duh
- partly resolves issue # 109 - resolves: duplication of entities …
4:29 PM Changeset [575] by keesvb
additional fix for #114, unneccesary complex invoke of …
4:18 PM Changeset [574] by duh
- resolves bug # 100, not able to delete events
4:17 PM Changeset [573] by duh
- fixed issue with auto-creating ontologies when an ontology does not …
3:56 PM Ticket #26 (editing a sampling event template gives an error) created by kees.vanbochove@…
If you edit the fields of a SamplingEvent? template in the template …
3:45 PM Changeset [572] by keesvb
fixed bugs #111 and #112
3:36 PM Changeset [571] by duh
- fixed bug where sampling templates could not be editted
3:09 PM Changeset [570] by vinlud
Dynamic forms controls
2:57 PM Changeset [569] by duh
- commit related to bug # 107 -- extended Ontology domain class with a …
2:27 PM Changeset [568] by duh
- bugfix for issue #98 (person selects are empty and add/modify do not …
1:55 PM Changeset [567] by duh
- developmental commit for bug # 107 -- turning off all bootstrapping …
9:24 AM Changeset [566] by jahn
This view allows to test the searchable bug.

Jun 15, 2010:

5:45 PM Changeset [565] by duh
- upon adding a term the termEditorController now also adds the …
4:58 PM Ticket #78 (fill in unimported fields for all imported entities in simple import wizard) created by kees.vanbochove@…
It would be very nice if the import wizard contained an additional …
4:55 PM Ticket #27 (study show crashes ) created by kees.vanbochove@…
Study/show crashes now that several study members have been changed to …
4:54 PM Ticket #28 (study show stops working when a study has 0 subjects) created by kees.vanbochove@…
study/show gives an error whenever a study has 0 objects (something …
1:54 PM Ticket #29 (Searchable gives NumberFormatException, does not return correct search ...) created by j.saito@…
In revision: 556. Using Grails' Searchable plugin often results in …
1:15 PM Ticket #30 (edit study results in duplicate fields, and deleted fields do not get ...) created by leny.vanwijk@…
I added some diet treatments for 5 groups. After saving I looked at it …
10:25 AM Ticket #31 (imported subjects not accessible in edit) created by leny.vanwijk@…
If you want to edit and navigate from 2.Study to 3.Subjects by …
10:11 AM Ticket #32 (adding subjects in create study wizard doesn't work when no subjects ...) created by kees.vanbochove@…
When there are no studies in the database, the Add button in the …

Jun 14, 2010:

5:20 PM Changeset [564] by keesvb
fixed person problem in BootStrap?, added comments to Event class, …
5:07 PM Ticket #33 (simple import wizard, import subects gives some problems) created by leny.vanwijk@…
- I choose 'mouse template' but the imported data postview gives Home …
4:43 PM Ticket #79 (preview of columns in simple import wizard) created by kees.vanbochove@…
It would be nice if step 2 of the simple import wizard looks just like …
4:02 PM Ticket #34 (template order changes after every saving) created by leny.vanwijk@…
If I save a template and want to edit the study the order of the …
4:00 PM Ticket #35 (deleted groups in even template show up again after saving) created by leny.vanwijk@…
If I delete a group, save and look again at the study via editing the …
3:52 PM Ticket #80 (mark a whole row (all groups) in a template is not possible) created by leny.vanwijk@…
If I, in an event template, want to ascribe different treatments to …
3:30 PM Ticket #36 (naming groups on template impossible) created by leny.vanwijk@…
It is not possible to give your own name to groups you add in a …
3:28 PM Ticket #37 (deleting treatment impossible, system stops working) created by leny.vanwijk@…
If I accidentaly add too much treatments and I try to delete one with …
3:26 PM Ticket #81 (event template time codes) created by leny.vanwijk@…
It is not clear what codes are accepted if you want to define the …
3:18 PM Ticket #38 (add contact does not work properly) created by leny.vanwijk@…
If I try to add a contact I can only choose add/modify person for …
3:15 PM Ticket #39 (add publications does not work properly) created by leny.vanwijk@…
If I try to add a publication I can type some title-words and find the …
3:02 PM Ticket #40 (attemt to save study gives error message) created by leny.vanwijk@…
message: exception → …
1:44 PM Changeset [563] by keesvb
restored development requirement
1:36 PM Changeset [562] by keesvb
version 0.3.1: re-enabled saving and deleted >0 subjects requirement …
1:00 PM Changeset [561] by keesvb
version 0.3.0: fixed some issues with updating boolean fields, changed …
10:19 AM Changeset [560] by jahn
Fixed bug in with new identifier of domain class Study.

Jun 11, 2010:

4:22 PM Changeset [559] by roberth
Added boolean template field type
4:00 PM Changeset [558] by roberth
Improved template editor , stringlists and ontologyfields can be …
3:50 PM Changeset [557] by duh
- fixed issues with templates not refreshing properly in the wizard …

Jun 10, 2010:

4:45 PM Changeset [556] by roberth
Improved the TemplateEditor? again: templates can be created and …
4:10 PM Changeset [555] by vinlud
Improved overview + reset button
11:43 AM Changeset [554] by jahn
Refactored member 'code' of Study. Changed it from being template to …
11:21 AM Changeset [553] by jahn
Changed name of CCMCommunicationManager to CommunicationManager?.
1:36 AM Changeset [552] by keesvb
added BioPortal? Ontology add function via Ontocat, added test for that
1:34 AM Changeset [551] by keesvb
deleted obsolete tests
1:33 AM Changeset [550] by keesvb
added entity property to TemplateField?; added validator to Template to …
1:28 AM Ticket #82 (add boolean TemplateFieldType) created by kees.vanbochove@…
add a boolean field type, which is represented by a checkbox
1:26 AM Ticket #83 (use ontology to define unit in template fields) created by kees.vanbochove@…
In the template editor, use an ontology to describe the units. I would …
1:12 AM Ticket #84 (add ontologies chooser to template editor) created by kees.vanbochove@…
For ONTOLOGYTERM fields, the ontologies that the terms should come …
12:32 AM Ticket #85 (use study code for module linking) created by kees.vanbochove@…
Factor out the study code of the Academic study template and put it …

Jun 9, 2010:

5:17 PM Changeset [549] by jahn
Remvoed bug in getStudy(). If a non-valid id is passed as argument, we …
1:35 PM Changeset [548] by jahn
Cleaned up old code.
1:11 PM Changeset [547] by vinlud
Base simpleQuery
12:55 PM Changeset [546] by roberth
Fixed bug #91 (files as feature request): if user hits enter when …
12:54 PM Changeset [545] by tabma
- fixed Advanced Import Wizard (preferredIdentifier issues)
12:46 PM Changeset [544] by roberth
Template editor is now able to add, edit, move and delete fields. Also …

Jun 8, 2010:

5:17 PM Ticket #86 (publication) created by jildau.bouwman@…
A user will generally hit the enter button after including text in a …
5:14 PM Ticket #41 (publication) created by jildau.bouwman@…
The add publication feature does not work in internet explorer. If …
5:08 PM Changeset [543] by keesvb
added postgres database dump (0.2.5) to be able to track changes in …
4:36 PM Changeset [542] by keesvb
dubbed version 0.2.5
3:13 PM Changeset [541] by duh
- more indentation and documentation shite.…
1:04 PM Changeset [540] by duh
- fixed indentation shite!!! - samples dev commit
11:18 AM Changeset [539] by duh
- dev commit

Jun 7, 2010:

4:39 PM Changeset [538] by roberth
Improved template editor. Moving fields and basic editing works already.
11:13 AM Changeset [537] by jahn
Added empty method for providing query results of a query on Simple …
9:20 AM Changeset [536] by roberth
Samples are now shown in the study overview page. Also some tests are …

Jun 4, 2010:

5:06 PM Changeset [535] by duh
- removed obsolete templates - added redirect functionality
4:00 PM Changeset [534] by tabma
- rewrote MappingColumn? (and underlying methods) to have a String …
3:33 PM Changeset [533] by duh
- adding 'quicksave' option in the 'edit study' wizard
2:58 PM Changeset [532] by duh
- removed some obsolete code
2:38 PM Changeset [531] by duh
- fixed some of the indentation bootstrap hell... c'mon people make …
2:04 PM Changeset [530] by gajula
plant templates-prasad
1:01 PM Changeset [529] by duh
- updated version 0.2.4 - fixed group table not having a slider
12:49 PM Changeset [528] by duh
- minified versions of wizard.css and wizard.js
12:33 PM Ticket #42 (adding of a certain publication does not work) created by kees.vanbochove@…
Adding of publications works fine, but the publication "NuGO PPS1 …
12:15 PM Changeset [527] by roberth
Adding of contacts is made possible in the study creation wizard.
11:42 AM Changeset [526] by duh
- beta version of loading and editing a study using the wizard
11:20 AM Changeset [525] by duh
- fixed some indentation
10:42 AM Changeset [524] by duh
- renamed 'SampleProtocol?' to a more userfriendly 'Sample protocol'

Jun 3, 2010:

4:37 PM Changeset [523] by jahn
Removed superfluous output.
3:13 PM Changeset [522] by roberth
Fixed IE7 issues with studies and publications, including bug #85
1:59 PM Changeset [521] by duh
- changed index text
12:59 PM Changeset [520] by duh
- in revision #519 and #518 both wizard.js and wizard.css were …
12:31 PM Changeset [519] by roberth
Added some text in the add publication dialog
12:27 PM Changeset [518] by roberth
Publications can be added to a study in the create study wizard. …
11:07 AM Changeset [517] by duh
- minified updated CSS and JS
10:03 AM Changeset [516] by jahn
Added two externalStudyIDs.
9:48 AM Changeset [515] by jahn
REST resources for communicating with the Simple Assay Module.
9:45 AM Changeset [514] by jahn
fixed minor inconsistentcy.
9:36 AM Ticket #43 (relative time fields cause errors in production environment) created by kees.vanbochove@…
JavaScript? error: showExampleReltime is not defined on nbx14 when …
8:56 AM Ticket #44 (pressing browser buttons in the wizard does not show a warning) created by kees.vanbochove@…
when pressing the back button when on e.g. the subjects page, the …
8:12 AM Changeset [513] by keesvb
version 0.2.3, deleted sampleTemplates field in Template as it will …
8:06 AM Ticket #87 (add modify study functionality to create study wizard) created by kees.vanbochove@…
The 'modify an existing study' function does not yet work an has to be …
8:03 AM Ticket #45 (in IE7, the subjects on the timeline in the study overview do not show up) created by kees.vanbochove@…
looks like the subjects were missing on the Events study overview …
8:01 AM Ticket #46 (upload button for FILE fields does not show in production environment) created by kees.vanbochove@…
when started in production mode, the FILE field does not show up

Jun 2, 2010:

5:24 PM Changeset [512] by duh
- added 'wait' page before saving…
5:00 PM Changeset [511] by jahn
Slightly extended for REST communication.
4:38 PM Changeset [510] by duh
- wizard saving second version
4:22 PM Changeset [509] by duh
- wizard saving initial version - removed main transaction as it …

Jun 1, 2010:

2:45 PM Changeset [508] by roberth
Local file should not be committed :)
2:45 PM Changeset [507] by roberth
Implemented file upload template fields
1:09 PM Changeset [506] by keesvb
changed giveDomainFields() implementations in TemplateEntity? to static
11:30 AM Changeset [505] by vinlud
Set correct view
10:49 AM Changeset [504] by vinlud
Typo
10:32 AM Ticket #88 (add samples to study overview) created by kees.vanbochove@…
make a tab Samples to describe all Samples in the study, just like …
9:57 AM Ticket #89 (MAGETAB export) created by kees.vanbochove@…
MAGETAB export, to get both transcriptomics data and study capture …
9:56 AM Ticket #90 (export to ISATAB) created by kees.vanbochove@…
ISATAB export function to get the data of a study in ISATAB format
9:55 AM Ticket #91 (export to XML or RDF) created by kees.vanbochove@…
It would be very nice to get an output of a study in XML or RDF form, …

May 31, 2010:

4:45 PM Changeset [503] by duh
- finished off grouping page
1:53 PM Changeset [502] by roberth
RELTIME fields in the wizard now show the parsed text in blue when …
11:23 AM Changeset [501] by duh
- minor css change for textareas
10:24 AM Changeset [500] by duh
- reformatted some indentations - set svn keyword expansion
9:56 AM Changeset [499] by duh
- fixed Vincent's commit (498) which broke the repository, you need to …
9:03 AM Changeset [498] by vinlud
Base form controls and UI
8:04 AM Ticket #92 (save functionality in create study wizard) created by kees.vanbochove@…
the save function in the create study wizard should work
7:57 AM Ticket #47 (in the save step of the simple import wizard, an error is thrown) created by kees.vanbochove@…
After clicking this is OK in the third step of the simple import …
7:56 AM Ticket #48 (simple import wizard should show all fields, not only template fields) created by kees.vanbochove@…
In the second step of the simple import wizard, giveFields() should be …

May 28, 2010:

4:19 PM Changeset [497] by roberth
Implemented RELTIME parsing and showing in the wizard. Also made TEXT …
3:36 PM Ticket #93 (separate out input of Events, Sampling Events and EventGroups) created by kees.vanbochove@…
the current event input screen in the study is too complex. The new …
3:32 PM Ticket #94 (re-layout study create wizard, info boxes should stand out more and ...) created by kees.vanbochove@…
The info boxes are not being read by test users but ignored. The text …
3:30 PM Ticket #95 (ApoE3Leiden muis is niet in de strain ontology) created by kees.vanbochove@…
Is officieel ook (nog) geen strain maar dus een genotype (van Black …
3:18 PM Ticket #96 (ability to enter relative dates for events) created by kees.vanbochove@…
relative dates should be entered for Event start and end time, in …
2:25 PM Changeset [496] by duh
- set svn keyword expansion
2:19 PM Changeset [495] by duh
- increased application version to 0.2.2
2:15 PM Changeset [494] by duh
- fixed a nasty IE bug that caused select elements with onchange …
1:48 PM Ticket #97 (F5 in create study wizard does not give warning) created by kees.vanbochove@…
it returns to the first page, but the data is still preserved?
1:24 PM Ticket #98 (selecting multiple subjects in study create wizard works very bad) created by kees.vanbochove@…
- please allow deselect by clicking anywhere - allow using SHIFT to …
1:19 PM Ticket #49 (Import wizard, templatefield typecast error) created by t.w.abma@…
When importing via the Simple Import wizard and a sheet has values …
1:16 PM Ticket #99 (in study create wizard, after adding a number of species, the choices ...) created by kees.vanbochove@…
e.g. species goes back to first species, please let checkboxes stay at …
1:12 PM Ticket #100 (ability to add papers (publications) to study in study create wizard) created by kees.vanbochove@…
publications should be added in study create wizard, study step
1:06 PM Ticket #101 (ability to add contacts and roles in the study create wizard (in the ...) created by kees.vanbochove@…
Study hasMany persons: StudyPerson? should be implemented in wizard
1:03 PM Ticket #102 (show (and force) which (template) fields are mandatory in study create ...) created by kees.vanbochove@…
In template fields 'required' is set, this should be made visible with …
11:55 AM Changeset [493] by keesvb
changed SamplingEvent? definitions in Bootstrap and coupled …
11:25 AM Ticket #50 (storing TEXT fields does not work in production environment) created by kees.vanbochove@…
Storage of a TEXT field does not work in production environment. When …
11:08 AM Changeset [492] by tabma
- properties in simple import wizard now shows all template fields - …
10:36 AM Changeset [491] by jahn
Removed obvious error that led to compile-time error.
10:24 AM Changeset [490] by jahn
Added connection to test server nbx5.

May 27, 2010:

4:26 PM Changeset [489] by tabma
- simple wizard, tag library for properties added with a …
4:10 PM Changeset [488] by duh
- tweaked termEditorController (set lines in the proper order, error() …
4:03 PM Changeset [487] by roberth
Added net RELTIME template field type to contain relative times (e.g. …
3:57 PM Changeset [486] by duh
- enabled SQL logging for postgres in 'production' - added extra debug …
1:13 PM Changeset [485] by tabma
- refactored (now using configuration file where entities to be used …
11:36 AM Changeset [484] by duh
- grouping page version 0.2 (tooltips working, headers, help feedback) …
10:55 AM Changeset [483] by roberth
Improved flexibility of the publication chooser and added comments
8:36 AM Changeset [482] by keesvb
solved compilation error, added relative date type, restructured …

May 26, 2010:

6:05 PM Changeset [481] by duh
- added JavaScript? variable 'baseUrl' containing the grails base …
5:40 PM Changeset [480] by jahn
Providing some methods for showing that REST/JSON actually works for …
4:53 PM Changeset [479] by roberth
Created an interface to PubMed? for searching publications. This is …
4:36 PM Changeset [478] by vinlud
Initial structure simpleQuery
3:49 PM Changeset [477] by duh
- table columns are now dynamically scaled
3:48 PM Ticket #51 (adding new ontology terms does not work (also on ci.nmcdsp.org)) created by kees.vanbochove@…
Test with ontologyID 1314 Error message: Could not add ontology: …
3:16 PM Changeset [476] by keesvb
dub this version 0.2.1
3:13 PM Changeset [475] by duh
- borderless iFrame fix for IE
3:05 PM Changeset [474] by duh
- fixed IE7 compatibility issues (CSS & Javascript) - resolved bug #63
2:14 PM Changeset [473] by duh
- style was not passed properly after bugfix…
1:27 PM Changeset [472] by duh
- resolved bug #63
12:27 PM Changeset [471] by roberth
Adjusted the wizard css in order to render the question mark right in IE7
12:16 PM Ticket #52 (layout of study capture wizard is awful in IE7) created by kees.vanbochove@…
See screenshots. The template fields (i) items are not layouted in the …
12:16 PM Changeset [470] by duh
-removed some debug lines
12:10 PM Changeset [469] by duh
- bugfix #59, #60 & #61 --> all related to eachother - refactored …
12:04 PM Changeset [468] by roberth
Solved show method raising an exception with every call
10:50 AM Changeset [467] by roberth
Updated study view to show the events on a timeline.

May 25, 2010:

5:42 PM Changeset [466] by duh
- fixed issue with wizard.min.js
4:55 PM Changeset [465] by keesvb
typing error
4:52 PM Changeset [464] by keesvb
workaround for Postgres, TEXT field are not stored properly
3:59 PM Changeset [463] by duh
- resolved #62 changes are not saved in study create wizard
3:32 PM Ticket #53 (changes are not saved in study create wizard) created by kees.vanbochove@…
If you add some species in the study create wizard, you edit some …
3:31 PM Ticket #54 (create study wizard hangs when adding different species of one template) created by kees.vanbochove@…
If you add 42 Arabidopsis thaliana Human subjects in the create study …
3:21 PM Ticket #55 (create wizard hangs on subject species) created by kees.vanbochove@…
It is possible to confuse the wizard as to which template a certain …
3:11 PM Ticket #56 (Remove subject bug - create wizard hangs) created by kees.vanbochove@…
Adding 42 subjects, removing the first subject and then re-adding …
12:28 PM Changeset [462] by duh
- version 0.2.0 !
12:26 PM Changeset [461] by keesvb
changed Genotype field to a String field
12:06 PM Changeset [460] by duh
- fixed issue with the table editor - view for grouping page
12:05 PM Changeset [459] by vinlud
Check empty string ontology selector
11:18 AM Changeset [458] by roberth
Subject class changed again to improve performance. Also updated …
11:05 AM Changeset [457] by duh
- fixed improved tooltip functionality
9:17 AM Changeset [456] by vinlud
Messaging & checks ontology selector

May 24, 2010:

11:48 PM Changeset [455] by keesvb
Reverting Subject optimization as it breaks the study create wizard on …
Note: See TracTimeline for information about the timeline view.