Ticket #264 (assigned defect)

Opened 3 years ago

Last modified 2 years ago

After importing samples into a study the Sample step in the wizard is broken

Reported by: business@… Owned by: business@…
Priority: major Milestone: Should have
Component: Study create/edit wizard Version:
Keywords: Cc:
Product: Operating system:
URL: Hardware:

Description (last modified by business@…) (diff)

If you create a new study, import Samples afterwards (which then don't have any parent events or subjects), the wizard Sample step gives an error:

2011-01-07 19:00:12,640 [TP-Processor9] ERROR view.GroovyPageView  - Error processing GroovyPageView: Error executing tag <af:page>: null at /home/tomcat/apache-tomcat-ci/webapps/gscf-0.6.1-ci/WEB-INF/grails-app/views/studyWizard/pages/_samples.gsp:1
org.codehaus.groovy.grails.web.taglib.exceptions.GrailsTagException: Error executing tag <af:page>: null at /home/tomcat/apache-tomcat-ci/webapps/gscf-0.6.1-ci/WEB-INF/grails-app/views/studyWizard/pages/_samples.gsp:1
	at home_tomcat_apache_tomcat_ci_webapps_gscf_0_6_1_ci_WEB_INF_grails_app_views_studyWizard_pages__samples_gsp.run(home_tomcat_apache_tomcat_ci_webapps_gscf_0_6_1_ci_WEB_INF_grails_app_views_studyWizard_pages__samples_gsp:150)
	at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
	at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291)
	at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:774)
	at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
	at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:896)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NullPointerException
2011-01-07 19:00:12,668 [TP-Processor9] ERROR errors.GrailsExceptionResolver  - Exception occurred when processing request: [GET] /gscf-0.6.1-ci/studyWizard/pages - parameters:
execution: e14s4
Stacktrace follows:
org.springframework.webflow.execution.FlowExecutionException: Exception thrown in state 'samples' of flow 'studyWizard/pages'
	at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
	at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291)
	at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:774)
	at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
	at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:896)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.IllegalStateException: Exception occurred rendering view org.codehaus.groovy.grails.web.servlet.view.GroovyPageView: unnamed; URL [/WEB-INF/grails-app/views//studyWizard/pages/_samples.gsp]
	... 6 more
Caused by: org.codehaus.groovy.grails.web.pages.exceptions.GroovyPagesException: Error processing GroovyPageView: Error executing tag <af:page>: null at /home/tomcat/apache-tomcat-ci/webapps/gscf-0.6.1-ci/WEB-INF/grails-app/views/studyWizard/pages/_samples.gsp:1
	... 6 more
Caused by: org.codehaus.groovy.grails.web.taglib.exceptions.GrailsTagException: Error executing tag <af:page>: null at /home/tomcat/apache-tomcat-ci/webapps/gscf-0.6.1-ci/WEB-INF/grails-app/views/studyWizard/pages/_samples.gsp:1
	at home_tomcat_apache_tomcat_ci_webapps_gscf_0_6_1_ci_WEB_INF_grails_app_views_studyWizard_pages__samples_gsp.run(home_tomcat_apache_tomcat_ci_webapps_gscf_0_6_1_ci_WEB_INF_grails_app_views_studyWizard_pages__samples_gsp:150)
	... 6 more
Caused by: java.lang.NullPointerException
2011-01-07 19:00:12,671 [TP-Processor9] ERROR servlet.GrailsDispatcherServlet  - HandlerInterceptor.afterCompletion threw exception
java.lang.NullPointerException
	at BaseFilters$_closure1_closure3_closure7.doCall(BaseFilters.groovy:42)
	at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
	at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291)
	at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:774)
	at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
	at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:896)
	at java.lang.Thread.run(Thread.java:662)

To be discussed further, this also relates to the import wizard.

The issue can be demonstrated in CI by clicking on the Sample step of the studies GSE5509_2 and TESTSAMPLE.

Change History

Changed 3 years ago by business@…

  • description modified (diff)

Changed 3 years ago by work@…

  • status changed from new to assigned
  • owner changed from work@… to kees.vanbochove@…

this is actually by design and I do not consider this as a bug... we need to discuss this 'issue' with Jildau...

Changed 3 years ago by work@…

  • component changed from Unknown to Study create/edit wizard

Changed 3 years ago by work@…

  • owner changed from kees.vanbochove@… to jildau.bouwman@…

Changed 2 years ago by work@…

  • owner changed from jildau.bouwman@… to business@…
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