Ticket #203 (closed defect: fixed)

Opened 3 years ago

Last modified 3 years ago

As of 18 november the Chebi Ontology (1007) fails

Reported by: work@… Owned by: work@…
Priority: major Milestone: Should have
Component: General Version:
Keywords: Cc:
Product: Operating system:
URL: Hardware:

Description

Today the BootStrapStudies? was breaking on Ontology 1007:

Error:
2010-11-19 10:51:56,162 [main] ERROR bioportal.BioportalOntologyService? - Web service signature has changed!
2010-11-19 10:51:56,163 [main] ERROR bioportal.BioportalOntologyService? - isMetadataOnly : isMetadataOnly : isMetadataOnly : isMetadataOnly


message : isMetadataOnly : isMetadataOnly
cause-exception : com.thoughtworks.xstream.mapper.CannotResolveClassException?
cause-message : isMetadataOnly : isMetadataOnly
class : uk.ac.ebi.ontocat.bioportal.xmlbeans.OntologyBean?
required-type : uk.ac.ebi.ontocat.bioportal.xmlbeans.OntologyBean?
path : /ontologyBean/isMetadataOnly
line number : 25

When I looked at the Chebi Ontology (  http://bioportal.bioontology.org/ontologies/44746 ), it appeared the ontology had been updated on the 18th of November. I tried upgrading Ontocat from version 0.9.5.3 to the latest (0.9.6) in r1174 but it is still failing. I suspect either because of an issue with the updated Ontology itself, or that Ontocat 0.9.6 is not yet supporting it (new signature?). I also added a !=null check to Ontology.groovy in r1174 to make sure bootstrapping does not break when getBioPortalOntology fails...

For now, chebi (1007) remains broken. We need to keep a watch on Ontocat and -if nothing is fixed- file a ticket with them.

Change History

Changed 3 years ago by work@…

There are still no updated on the Ontocat side, so I created a ticket with Ontocat:

 http://www.ontocat.org/ticket/2

Changed 3 years ago by work@…

  • status changed from new to assigned
  • owner changed from business@… to work@…

Changed 3 years ago by work@…

  • status changed from assigned to closed
  • resolution set to fixed

Morris Schwertz has fixed Ontocat, included the latest version (0.9.6.1) in gscf in changelist r1228. Closing issue...

Note: See TracTickets for help on using tickets.