Ticket #203 (closed defect: fixed)

Opened 6 years ago

Last modified 6 years ago

As of 18 november the Chebi Ontology (1007) fails

Reported by: work@… Owned by: work@…
Priority: major Milestone: Should have
Component: General Version:
Keywords: Cc:
Hardware: Operating system:
Product: URL:


Today the BootStrapStudies? was breaking on Ontology 1007:

2010-11-19 10:51:56,162 [main] ERROR bioportal.BioportalOntologyService? - Web service signature has changed!
2010-11-19 10:51:56,163 [main] ERROR bioportal.BioportalOntologyService? - isMetadataOnly : isMetadataOnly : isMetadataOnly : isMetadataOnly

message : isMetadataOnly : isMetadataOnly
cause-exception : com.thoughtworks.xstream.mapper.CannotResolveClassException?
cause-message : isMetadataOnly : isMetadataOnly
class : uk.ac.ebi.ontocat.bioportal.xmlbeans.OntologyBean?
required-type : uk.ac.ebi.ontocat.bioportal.xmlbeans.OntologyBean?
path : /ontologyBean/isMetadataOnly
line number : 25

When I looked at the Chebi Ontology ( http://bioportal.bioontology.org/ontologies/44746 ), it appeared the ontology had been updated on the 18th of November. I tried upgrading Ontocat from version to the latest (0.9.6) in r1174 but it is still failing. I suspect either because of an issue with the updated Ontology itself, or that Ontocat 0.9.6 is not yet supporting it (new signature?). I also added a !=null check to Ontology.groovy in r1174 to make sure bootstrapping does not break when getBioPortalOntology fails...

For now, chebi (1007) remains broken. We need to keep a watch on Ontocat and -if nothing is fixed- file a ticket with them.

Change History

comment:1 Changed 6 years ago by work@…

There are still no updated on the Ontocat side, so I created a ticket with Ontocat:


comment:2 Changed 6 years ago by work@…

  • Status changed from new to assigned
  • Owner changed from business@… to work@…

comment:3 Changed 6 years ago by work@…

  • Status changed from assigned to closed
  • Resolution set to fixed

Morris Schwertz has fixed Ontocat, included the latest version ( in gscf in changelist r1228. Closing issue...

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