# # ChangeLog for trunk # # Generated by Trac 1.0.2 # Jan 15, 2021, 3:34:38 PM Mon, 08 Mar 2010 23:03:22 GMT jahn [249] * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) Made controller for saving action used by create and edit. Still ... Mon, 08 Mar 2010 22:58:23 GMT jahn [248] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) Made controller for saving action used by create and edit. Still ... Mon, 08 Mar 2010 17:29:14 GMT duh [247] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (modified) * trunk/grails-app/conf/NimbleUrlMappings.groovy (modified) * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/conf/spring/resources.groovy (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/ProtocolController.groovy (modified) * trunk/grails-app/controllers/ProtocolParameterController.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/controllers/SearchableController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/QueryController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureType.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/importer/Column.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Compound.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ParameterStringListItem.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Person.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonAffiliation.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonRole.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/StudyPerson.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldListItem.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (modified) * trunk/grails-app/views/common/_jquerytmsetup.gsp (modified) * trunk/grails-app/views/common/_login_panel.gsp (modified) * trunk/grails-app/views/common/_partial.gsp (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/error.gsp (modified) * trunk/grails-app/views/event/create.gsp (modified) * trunk/grails-app/views/event/createForEventDescription.gsp (modified) * trunk/grails-app/views/event/create_1.gsp (modified) * trunk/grails-app/views/event/create_auto.gsp (modified) * trunk/grails-app/views/event/create_timepicker.gsp (modified) * trunk/grails-app/views/event/edit.gsp (modified) * trunk/grails-app/views/event/list.gsp (modified) * trunk/grails-app/views/event/partial.gsp (modified) * trunk/grails-app/views/event/show.gsp (modified) * trunk/grails-app/views/eventDescription/create.gsp (modified) * trunk/grails-app/views/eventDescription/edit.gsp (modified) * trunk/grails-app/views/eventDescription/list.gsp (modified) * trunk/grails-app/views/eventDescription/show.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) * trunk/grails-app/views/eventDescription/showProtocolParameters.gsp (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties.gsp (modified) * trunk/grails-app/views/importer/index.gsp (modified) * trunk/grails-app/views/importer/step1.gsp (modified) * trunk/grails-app/views/importer/step2.gsp (modified) * trunk/grails-app/views/language/create.gsp (modified) * trunk/grails-app/views/language/edit.gsp (modified) * trunk/grails-app/views/language/list.gsp (modified) * trunk/grails-app/views/language/show.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/layouts/nimble.gsp (modified) * trunk/grails-app/views/load/index.gsp (modified) * trunk/grails-app/views/query/index.gsp (modified) * trunk/grails-app/views/query/results.gsp (modified) * trunk/grails-app/views/query/selectsample.gsp (modified) * trunk/grails-app/views/sandbox/index.gsp (modified) * trunk/grails-app/views/searchable/index.gsp (modified) * trunk/grails-app/views/study/create.gsp (modified) * trunk/grails-app/views/study/edit.gsp (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_backup.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_backup.gsp (modified) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (modified) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (modified) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (modified) * trunk/grails-app/views/templates/nimble/login/_login.gsp (modified) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (modified) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (modified) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (modified) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (modified) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (modified) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_navigation.gsp (modified) * trunk/grails-app/views/wizard/common/_tabs.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_assays.gsp (modified) * trunk/grails-app/views/wizard/pages/_confirmation.gsp (modified) * trunk/grails-app/views/wizard/pages/_done.gsp (modified) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/grails-app/views/wizard/pages/_events.gsp (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/grails-app/views/wizard/pages/_protocols.gsp (modified) * trunk/grails-app/views/wizard/pages/_samples.gsp (modified) * trunk/grails-app/views/wizard/pages/_start.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_templates.gsp (modified) * trunk/grails-app/views/wizard/pages/_timeline.gsp (modified) * trunk/web-app/js/development.js (modified) * trunk/web-app/js/jquery-ui-1.7.2.custom.min.js (modified) * trunk/web-app/js/jquery.qtip-1.0.0-rc3.min.js (modified) * trunk/web-app/js/login_panel.js (modified) * trunk/web-app/js/swfobject.js (modified) * trunk/web-app/js/table-editor.js (modified) * trunk/web-app/js/timeline.js (modified) * trunk/web-app/js/timepicker-0.2.1.js (modified) * trunk/web-app/js/topnav.js (modified) * trunk/web-app/js/wizard.js (modified) - set keyword expansion Mon, 08 Mar 2010 17:25:07 GMT duh [246] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) - increased session lifetime to 7 days - improved wizard study ... Mon, 08 Mar 2010 16:53:30 GMT tabma [245] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties.gsp (modified) - columnmapping added Mon, 08 Mar 2010 00:41:43 GMT jahn [244] * trunk/grails-app/views/eventDescription/edit.gsp (modified) Minor edit. Mon, 08 Mar 2010 00:41:15 GMT jahn [243] * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) Fixed bug in dialog: newly added lines can now be removed too (as the ... Mon, 08 Mar 2010 00:10:54 GMT jahn [242] * trunk/grails-app/views/eventDescription/edit.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) Functionality of dynamic protocol parameter selection improved ... Sun, 07 Mar 2010 23:19:54 GMT jahn [241] * trunk/grails-app/views/eventDescription/edit.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) * trunk/grails-app/views/eventDescription/showProtocolParameters.gsp (modified) Functionality of dynamic protocol parameter selection improved. The ... Fri, 05 Mar 2010 16:26:05 GMT duh [240] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) - added ajaxOnChange parameter support for elements. ... Fri, 05 Mar 2010 15:46:29 GMT keesvb [239] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) updated TemplateEntity with a correct setFieldValue, also added ... Fri, 05 Mar 2010 14:21:52 GMT duh [238] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldListItem.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/grails-app/views/wizard/pages/_start.gsp (added) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_templates.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (modified) Refectored version of the wizard - initial template page has been ... Fri, 05 Mar 2010 14:08:28 GMT ademcan [237] * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) EventGroup in study view Fri, 05 Mar 2010 13:20:10 GMT keesvb [236] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) updated TemplateEntity to include empty maps, also added the ... Fri, 05 Mar 2010 11:32:58 GMT jahn [235] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ParameterStringListItem.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) The options that protocol parameters can take on are no longer ... Fri, 05 Mar 2010 08:27:57 GMT jahn [234] * trunk/grails-app/domain/dbnp/studycapturing/ParameterStringListItem.groovy (added) The options that parameters can take on are no longer represented by ... Fri, 05 Mar 2010 08:08:23 GMT jahn [233] * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) * trunk/grails-app/views/eventDescription/showProtocolParameters.gsp (modified) Functionality for dynamically adding parameters included. Dialog for ... Wed, 03 Mar 2010 16:18:22 GMT keesvb [232] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) adjusted Event-Sample relationship to go into EventGroup, added ... Wed, 03 Mar 2010 14:50:32 GMT tabma [231] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_properties.gsp (modified) - property page contains columns and field identifiers combined in ... Wed, 03 Mar 2010 11:53:38 GMT keesvb [230] * trunk/grails-app/conf/BootStrap.groovy (modified) deleted old study template references from BootStrap Wed, 03 Mar 2010 11:50:40 GMT keesvb [229] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) updated study/show to show multiple subject templates Wed, 03 Mar 2010 11:17:06 GMT keesvb [228] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldListItem.groovy (modified) study template convenience methods Wed, 03 Mar 2010 11:06:00 GMT duh [227] * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) - Template::findAllByEntity(..) did not work as expected. Now you are ... Wed, 03 Mar 2010 10:42:39 GMT ademcan [226] * trunk/grails-app/domain/dbnp/studycapturing (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Study List and Study Comparaison with new Template version Wed, 03 Mar 2010 08:20:12 GMT keesvb [225] * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldListItem.groovy (added) commit of missing file Tue, 02 Mar 2010 17:10:52 GMT keesvb [224] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateStudyField.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (deleted) revised templating system: templates are now per entity rather than ... Tue, 02 Mar 2010 12:37:40 GMT ademcan [223] * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Study List and Study Comparaison Tue, 02 Mar 2010 10:06:39 GMT duh [222] * trunk/application.properties (modified) - updated project to Grails 1.2.1 Mon, 01 Mar 2010 16:48:56 GMT jahn [221] * trunk/grails-app/views/eventDescription/showProtocolParameters.gsp (added) EventDescription in progress. This is still ugly, because it uses a ... Mon, 01 Mar 2010 16:48:25 GMT jahn [220] * trunk/grails-app/views/eventDescription/edit.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) EventDescription in progress. This is still ugly, because it uses a ... Mon, 01 Mar 2010 16:47:26 GMT jahn [219] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) EventDescription in progress. This is still ugly, because it uses a ... Mon, 01 Mar 2010 13:12:55 GMT jahn [218] * trunk/grails-app/controllers/QueryController.groovy (deleted) The query controller moved to ... Fri, 26 Feb 2010 15:32:43 GMT duh [217] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/grails-app/views/wizard/pages/_events.gsp (modified) * trunk/web-app/css/wizard.css (modified) - adding support for event deletion Fri, 26 Feb 2010 14:23:03 GMT duh [216] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_events.gsp (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/table-editor.js (modified) - event grouping data is now handled properly - added image support ... Fri, 26 Feb 2010 11:26:29 GMT tabma [215] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties.gsp (modified) * trunk/grails-app/views/importer/index.gsp (modified) * trunk/grails-app/views/importer/step1.gsp (modified) * trunk/grails-app/views/importer/step2.gsp (modified) - added Template chooser, used in the properties page Fri, 26 Feb 2010 10:52:38 GMT duh [214] * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/web-app/js/timepicker (deleted) * trunk/web-app/js/timepicker-0.2.1.js (modified) - timepicker did not show correctly on initial show due to the fact ... Thu, 25 Feb 2010 15:18:22 GMT duh [213] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/pages/_confirmation.gsp (added) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (modified) * trunk/grails-app/views/wizard/pages/_events.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_templates.gsp (modified) * trunk/grails-app/views/wizard/pages/_timeline.gsp (added) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/images/icons/famfamfam/add.png (added) * trunk/web-app/images/icons/famfamfam/exclamation.png (added) * trunk/web-app/images/icons/famfamfam/eye.png (added) * trunk/web-app/images/icons/famfamfam/information.png (added) * trunk/web-app/js/grouping.js (deleted) * trunk/web-app/js/table-editor.js (modified) * trunk/web-app/js/timeline.js (added) * trunk/web-app/js/wizard.js (modified) - restructured wizard - added information boxes - improved error ... Thu, 25 Feb 2010 14:06:16 GMT keesvb [212] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateStudyField.groovy (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) refactored template entity code into TemplateEntity, added more ... Wed, 24 Feb 2010 12:04:40 GMT ademcan [211] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/test/unit/SearchableControllerTests.groovy (added) Study List and Study Overview with Events, eventDescripiton, assays ... Tue, 23 Feb 2010 09:23:37 GMT ademcan [210] * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Study List and Study Overview with Events, eventDescripiton and assays Mon, 22 Feb 2010 17:35:37 GMT duh [209] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventGroup.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_eventDescriptions.gsp (added) * trunk/grails-app/views/wizard/pages/_events.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/table-editor.js (modified) * trunk/web-app/js/wizard.js (modified) - added events, eventDescriptions, etc Thu, 18 Feb 2010 13:53:05 GMT keesvb [208] * trunk/grails-app/domain/dbnp/studycapturing/EventGroup.groovy (added) added EventGroup entity Thu, 18 Feb 2010 11:17:37 GMT jahn [207] * trunk/grails-app/views/searchable/selectsample.gsp (deleted) Everything related to search and querying is moved in to ... Thu, 18 Feb 2010 10:52:35 GMT jahn [206] * trunk/grails-app/views/query/index.gsp (modified) * trunk/grails-app/views/query/results.gsp (copied) * trunk/grails-app/views/query/selectsample.gsp (added) Everything related to search and querying is moved in to ... Thu, 18 Feb 2010 10:51:36 GMT jahn [205] * trunk/grails-app/controllers/dbnp/query (added) * trunk/grails-app/controllers/dbnp/query/QueryController.groovy (added) Everything related to search and querying is moved in to ... Thu, 18 Feb 2010 09:41:10 GMT duh [204] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/images/wizard (added) * trunk/web-app/images/wizard/add-hover.png (added) * trunk/web-app/images/wizard/add.png (added) * trunk/web-app/images/wizard/remove-hover.png (added) * trunk/web-app/images/wizard/remove.png (added) * trunk/web-app/js/grouping.js (modified) * trunk/web-app/js/wizard.js (modified) - temporary commit Thu, 18 Feb 2010 07:10:35 GMT tabma [203] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/Column.groovy (added) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties.gsp (modified) * trunk/grails-app/views/importer/step1.gsp (modified) * trunk/grails-app/views/importer/step2.gsp (modified) * trunk/grails-app/views/sandbox/index.gsp (modified) * trunk/test/unit/dbnp/importer/ColumnTests.groovy (added) - rewrote to HashMap based columns (columns are always unique, ... Wed, 17 Feb 2010 13:24:32 GMT jahn [202] * trunk/grails-app/views/searchable/selectsample.gsp (modified) Updated checkbox functionality. Tue, 16 Feb 2010 14:13:09 GMT jahn [201] * trunk/grails-app/controllers/SearchableController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/views/searchable/selectsample.gsp (modified) Added some features: subgrouping by event groups and times, select ... Mon, 15 Feb 2010 20:38:24 GMT tabma [200] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties.gsp (added) * trunk/grails-app/views/importer/step2.gsp (added) - properties template Mon, 15 Feb 2010 15:50:34 GMT jahn [199] * trunk/grails-app/views/searchable/selectsample.gsp (modified) Still trying to build a proper overview of the samples. jquery's ... Mon, 15 Feb 2010 15:48:36 GMT jahn [198] * trunk/grails-app/controllers/SearchableController.groovy (modified) Towards finishing the subGrouping for subjects. Mon, 15 Feb 2010 15:29:55 GMT jahn [197] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Modified convenience function for displaying date differences to ... Fri, 12 Feb 2010 18:56:06 GMT jahn [196] * trunk/grails-app/controllers/SearchableController.groovy (modified) * trunk/grails-app/views/searchable/index.gsp (modified) * trunk/grails-app/views/searchable/selectsample.gsp (modified) Sample selection of the query controller: added buttons for subgroup ... Fri, 12 Feb 2010 12:11:52 GMT duh [195] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/pages/_assays.gsp (added) * trunk/grails-app/views/wizard/pages/_done.gsp (added) * trunk/grails-app/views/wizard/pages/_events.gsp (added) * trunk/grails-app/views/wizard/pages/_protocols.gsp (added) * trunk/grails-app/views/wizard/pages/_samples.gsp (added) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_templates.gsp (added) * trunk/grails-app/views/wizard/pages/_three.gsp (deleted) - seperated template page from study page - seperated study logic ... Fri, 12 Feb 2010 09:30:12 GMT ademcan [194] * trunk/grails-app/views/searchable (added) * trunk/grails-app/views/searchable/index.gsp (added) * trunk/grails-app/views/searchable/selectsample.gsp (added) the Searchable views for the querying part Fri, 12 Feb 2010 09:29:40 GMT ademcan [193] * trunk/grails-app/controllers/SearchableController.groovy (added) the Searchable controller for querying Thu, 11 Feb 2010 16:47:49 GMT duh [192] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/grouping.js (modified) * trunk/web-app/js/wizard.js (modified) - temporary commit - rewriting grouping javascript - uncommented ... Wed, 10 Feb 2010 16:55:24 GMT duh [191] * trunk/grails-app/conf/BootStrap.groovy (modified) - added bootstrap feedback about disabling study Wed, 10 Feb 2010 16:36:10 GMT duh [190] * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureType.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Compound.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Person.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonAffiliation.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonRole.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/StudyPerson.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateStudyField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) - set keyword expansion Wed, 10 Feb 2010 16:35:11 GMT duh [189] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/js/grouping.js (modified) * trunk/web-app/js/wizard.js (modified) - previous commits broke application bootstrapping: - fixed some ... Wed, 10 Feb 2010 15:21:55 GMT keesvb [188] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) clarified clean data feature example in sandbox Wed, 10 Feb 2010 15:09:52 GMT keesvb [187] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (deleted) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureType.groovy (copied) * trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (modified) * trunk/src/java/dbnp/data/CleanDataLayer.java (modified) changed definition of clean data layer, implemented it for the ... Wed, 10 Feb 2010 12:55:45 GMT keesvb [186] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) added samples, assays and clinical data to bootstrap, modified clean ... Wed, 10 Feb 2010 08:14:52 GMT keesvb [185] * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (added) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (added) data classes for persisting import mappings Tue, 09 Feb 2010 16:01:03 GMT keesvb [184] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Compound.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Person.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/PersonAffiliation.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/PersonRole.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Publication.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/StudyPerson.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics (deleted) Deleted transcriptomics data model: moved some classes to study ... Tue, 09 Feb 2010 15:46:18 GMT duh [183] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) - removed some debugging lines Tue, 09 Feb 2010 15:21:01 GMT keesvb [182] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) small change to importer to avoid cross-platform issues (now works ... Tue, 09 Feb 2010 15:13:42 GMT duh [181] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) - seperated wizard subject handling logic out of the webflow to make ... Tue, 09 Feb 2010 14:22:46 GMT duh [180] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/js/grouping.js (modified) - wizard subject page now mainains state and stores form data in flow ... Tue, 09 Feb 2010 10:53:21 GMT keesvb [179] * trunk/grails-app/domain/dbnp/studycapturing/TemplateStudyField.groovy (copied) added missing class for study template Mon, 08 Feb 2010 14:25:44 GMT duh [178] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/grouping.js (modified) * trunk/web-app/js/wizard.js (modified) - refactoring grouping functionality Mon, 08 Feb 2010 11:46:19 GMT keesvb [177] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) added mouse genotype fields to bootstrap, replaced giveAllFields in ... Mon, 08 Feb 2010 11:42:46 GMT keesvb [176] * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/importer (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) added first version of importer data model, added helper methods to ... Mon, 08 Feb 2010 10:49:37 GMT duh [175] * trunk/grails-app/conf/BootStrap.groovy (copied) - reverted Jahn's revision 174 where he deleted BootStrap.groovy Mon, 08 Feb 2010 09:45:27 GMT jahn [174] * trunk/grails-app/conf/BootStrap.groovy (deleted) Added extra treatment. Mon, 08 Feb 2010 07:23:33 GMT tabma [173] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/test/unit/dbnp/importer/ImporterControllerTests.groovy (added) * trunk/web-app/css/importer.css (modified) - created taglibrary for importer and first implementation detection ... Thu, 04 Feb 2010 16:50:31 GMT duh [172] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/grouping.js (added) * trunk/web-app/js/table-editor.js (added) * trunk/web-app/js/wizard.js (modified) - added table-editor.js which makes tables multi editable (see the ... Thu, 04 Feb 2010 13:34:56 GMT ademcan [171] * trunk/application.properties (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) new view for studies comparison and study details Wed, 03 Feb 2010 17:08:33 GMT jahn [170] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Fixed a bug in save(). Wed, 03 Feb 2010 14:50:14 GMT tabma [169] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer (added) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (added) * trunk/grails-app/views/importer/common (added) * trunk/grails-app/views/importer/common/_preview.gsp (added) * trunk/grails-app/views/importer/step1.gsp (moved) * trunk/test/unit/dbnp/importer (added) * trunk/test/unit/dbnp/importer/ImporterServiceTests.groovy (added) * trunk/test/unit/importer (added) * trunk/test/unit/importer/ImporterTagLibTests.groovy (added) * trunk/web-app/css/importer.css (added) - created taglibrary for importer and first implementation detection ... Wed, 03 Feb 2010 13:53:08 GMT jahn [168] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (deleted) Removed ProtocolInstance and ProtocolParameterInstance. Wed, 03 Feb 2010 13:49:30 GMT jahn [167] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Events have a convenience method for formating Durations Strings now. ... Wed, 03 Feb 2010 13:46:39 GMT jahn [166] * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) Samples have names now. Wed, 03 Feb 2010 09:09:19 GMT ademcan [165] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Studies comparaison view Tue, 02 Feb 2010 15:15:56 GMT duh [164] * trunk/web-app/js/wizard.js (modified) - removed console.log lines Tue, 02 Feb 2010 15:13:17 GMT duh [163] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/js/wizard.js (modified) - added some dummy youtube videos (see the help icon for the ethical ... Tue, 02 Feb 2010 14:07:02 GMT duh [162] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (modified) * trunk/grails-app/conf/NimbleUrlMappings.groovy (modified) * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/conf/spring/resources.groovy (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/ProtocolController.groovy (modified) * trunk/grails-app/controllers/ProtocolParameterController.groovy (modified) * trunk/grails-app/controllers/QueryController.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/MAGEAssay.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/development.js (modified) * trunk/web-app/js/login_panel.js (modified) * trunk/web-app/js/topnav.js (modified) * trunk/web-app/js/wizard.js (modified) - set keyword expansion Tue, 02 Feb 2010 13:08:16 GMT jahn [161] * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) SubjectGroups need names in order to be displayed as query resutlts. Tue, 02 Feb 2010 13:06:56 GMT jahn [160] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Added empty method. Tue, 02 Feb 2010 12:58:18 GMT duh [159] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/development.js (modified) * trunk/web-app/js/wizard.js (modified) - tag library now handles (INT and STRINGLIST) templateFields ... Tue, 02 Feb 2010 09:40:17 GMT keesvb [158] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) add values to stringlist template fields Tue, 02 Feb 2010 09:31:25 GMT duh [157] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (modified) - temporary commit Tue, 02 Feb 2010 09:31:18 GMT ademcan [156] * trunk/grails-app/views/study/list_extended.gsp (modified) comparaison of studies overview Tue, 02 Feb 2010 09:31:02 GMT jahn [155] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Tue, 02 Feb 2010 09:30:47 GMT jahn [154] * trunk/grails-app/views/event/edit.gsp (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 18:38:15 GMT jahn [153] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 18:38:01 GMT jahn [152] * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 17:26:23 GMT jahn [151] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) Some cleaning up done. Fri, 29 Jan 2010 17:08:49 GMT jahn [150] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (modified) * trunk/grails-app/views/event/edit.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) Updated editing of Events. RemoteFunction calls work. Still needs ...