# # ChangeLog for trunk # # Generated by Trac 1.0.2 # May 25, 2022, 3:22:16 AM Mon, 08 Feb 2010 11:42:46 GMT keesvb [176] * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/importer (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) added first version of importer data model, added helper methods to ... Mon, 08 Feb 2010 10:49:37 GMT duh [175] * trunk/grails-app/conf/BootStrap.groovy (copied) - reverted Jahn's revision 174 where he deleted BootStrap.groovy Mon, 08 Feb 2010 09:45:27 GMT jahn [174] * trunk/grails-app/conf/BootStrap.groovy (deleted) Added extra treatment. Mon, 08 Feb 2010 07:23:33 GMT tabma [173] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/test/unit/dbnp/importer/ImporterControllerTests.groovy (added) * trunk/web-app/css/importer.css (modified) - created taglibrary for importer and first implementation detection ... Thu, 04 Feb 2010 16:50:31 GMT duh [172] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/grouping.js (added) * trunk/web-app/js/table-editor.js (added) * trunk/web-app/js/wizard.js (modified) - added table-editor.js which makes tables multi editable (see the ... Thu, 04 Feb 2010 13:34:56 GMT ademcan [171] * trunk/application.properties (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) new view for studies comparison and study details Wed, 03 Feb 2010 17:08:33 GMT jahn [170] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Fixed a bug in save(). Wed, 03 Feb 2010 14:50:14 GMT tabma [169] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer (added) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (added) * trunk/grails-app/views/importer/common (added) * trunk/grails-app/views/importer/common/_preview.gsp (added) * trunk/grails-app/views/importer/step1.gsp (moved) * trunk/test/unit/dbnp/importer (added) * trunk/test/unit/dbnp/importer/ImporterServiceTests.groovy (added) * trunk/test/unit/importer (added) * trunk/test/unit/importer/ImporterTagLibTests.groovy (added) * trunk/web-app/css/importer.css (added) - created taglibrary for importer and first implementation detection ... Wed, 03 Feb 2010 13:53:08 GMT jahn [168] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (deleted) Removed ProtocolInstance and ProtocolParameterInstance. Wed, 03 Feb 2010 13:49:30 GMT jahn [167] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Events have a convenience method for formating Durations Strings now. ... Wed, 03 Feb 2010 13:46:39 GMT jahn [166] * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) Samples have names now. Wed, 03 Feb 2010 09:09:19 GMT ademcan [165] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Studies comparaison view Tue, 02 Feb 2010 15:15:56 GMT duh [164] * trunk/web-app/js/wizard.js (modified) - removed console.log lines Tue, 02 Feb 2010 15:13:17 GMT duh [163] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/js/wizard.js (modified) - added some dummy youtube videos (see the help icon for the ethical ... Tue, 02 Feb 2010 14:07:02 GMT duh [162] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (modified) * trunk/grails-app/conf/NimbleUrlMappings.groovy (modified) * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/conf/spring/resources.groovy (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/ProtocolController.groovy (modified) * trunk/grails-app/controllers/ProtocolParameterController.groovy (modified) * trunk/grails-app/controllers/QueryController.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (modified) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (modified) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/MAGEAssay.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/development.js (modified) * trunk/web-app/js/login_panel.js (modified) * trunk/web-app/js/topnav.js (modified) * trunk/web-app/js/wizard.js (modified) - set keyword expansion Tue, 02 Feb 2010 13:08:16 GMT jahn [161] * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) SubjectGroups need names in order to be displayed as query resutlts. Tue, 02 Feb 2010 13:06:56 GMT jahn [160] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Added empty method. Tue, 02 Feb 2010 12:58:18 GMT duh [159] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/development.js (modified) * trunk/web-app/js/wizard.js (modified) - tag library now handles (INT and STRINGLIST) templateFields ... Tue, 02 Feb 2010 09:40:17 GMT keesvb [158] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) add values to stringlist template fields Tue, 02 Feb 2010 09:31:25 GMT duh [157] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (modified) - temporary commit Tue, 02 Feb 2010 09:31:18 GMT ademcan [156] * trunk/grails-app/views/study/list_extended.gsp (modified) comparaison of studies overview Tue, 02 Feb 2010 09:31:02 GMT jahn [155] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Tue, 02 Feb 2010 09:30:47 GMT jahn [154] * trunk/grails-app/views/event/edit.gsp (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 18:38:15 GMT jahn [153] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 18:38:01 GMT jahn [152] * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) Currently Sample extends Event. The Sample class might better be ... Fri, 29 Jan 2010 17:26:23 GMT jahn [151] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) Some cleaning up done. Fri, 29 Jan 2010 17:08:49 GMT jahn [150] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (modified) * trunk/grails-app/views/event/edit.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (modified) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (modified) Updated editing of Events. RemoteFunction calls work. Still needs ... Fri, 29 Jan 2010 12:43:38 GMT jahn [149] * trunk/grails-app/conf/BootStrap.groovy (modified) Added another protocol and related protocol parameter types for testing. Fri, 29 Jan 2010 11:51:25 GMT ademcan [148] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) reorganization of the study views : template and protocol views in ... Thu, 28 Jan 2010 20:22:59 GMT tabma [147] * trunk/grails-app/controllers/dbnp/importer (added) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (added) * trunk/grails-app/services/dbnp/importer (added) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (added) * trunk/grails-app/views/importer (added) * trunk/grails-app/views/importer/index.gsp (added) * trunk/grails-app/views/importer/preview.gsp (added) * trunk/lib/poi-3.6-20091214.jar (added) - basic skeleton for the importer/previewer Thu, 28 Jan 2010 17:42:30 GMT keesvb [146] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/views/sandbox/index.gsp (modified) added helper functions to Subject and Template classes to easily get ... Thu, 28 Jan 2010 16:34:50 GMT duh [145] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_navigation.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_groups.gsp (added) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/development.js (added) * trunk/web-app/js/swfobject.js (added) * trunk/web-app/js/wizard.js (modified) - wizard subjects page now build a table with features, does not work ... Thu, 28 Jan 2010 13:45:10 GMT keesvb [144] * trunk/grails-app/controllers/SandboxController.groovy (added) * trunk/grails-app/views/sandbox (added) * trunk/grails-app/views/sandbox/index.gsp (added) * trunk/test/unit/SandboxControllerTests.groovy (added) added sandbox to facilitate easy code example communcation Thu, 28 Jan 2010 12:38:24 GMT keesvb [143] * trunk/grails-app/conf/BootStrap.groovy (modified) added template to example study Wed, 27 Jan 2010 16:17:59 GMT ademcan [142] * trunk/grails-app/views/study/show.gsp (modified) show selected study information in a tab view : reorganized events, ... Wed, 27 Jan 2010 15:12:20 GMT ademcan [141] * trunk/grails-app/views/study/show.gsp (modified) show in tab views : new organization Wed, 27 Jan 2010 12:32:41 GMT duh [140] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (modified) - temporary backup commit Wed, 27 Jan 2010 08:58:59 GMT keesvb [139] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) * trunk/grails-app/views/query/index.gsp (modified) * trunk/grails-app/views/study/create.gsp (modified) changed domain model for events and protocol parameters, and for ... Tue, 26 Jan 2010 15:46:01 GMT duh [138] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/data/Term.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/pages/_subjects.gsp (moved) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/css/wizard.css (modified) - added development version of wizard subjects page and logic - ... Tue, 26 Jan 2010 14:53:40 GMT ademcan [137] * trunk/grails-app/views/study/list_extended.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) "compare selected studies" option with tabs view Tue, 26 Jan 2010 09:48:51 GMT keesvb [136] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) added start of NuGO PPS3 to BootStrap Tue, 26 Jan 2010 09:09:30 GMT ademcan [135] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/list_extended.gsp (added) * trunk/grails-app/views/study/show.gsp (modified) "compare selected studies" option, with some examples studies, ... Mon, 25 Jan 2010 12:26:28 GMT duh [134] * trunk/web-app/js/timepicker-0.2.1.js (moved) - moved timepicker.js to timepicker-0.2.1.js (seems a bit more logical) Mon, 25 Jan 2010 12:23:21 GMT duh [133] * trunk/web-app/js/timepicker (added) * trunk/web-app/js/timepicker/timepicker.js (added) * trunk/web-app/js/tm.js (deleted) - removed tm.js - added timepicker/timepicker.js to replace tm.js - ... Mon, 25 Jan 2010 12:18:34 GMT duh [132] * trunk/grails-app/views/load/index.gsp (modified) * trunk/grails-app/views/query/index.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_backup.gsp (modified) - removed references as they are obsolete Mon, 25 Jan 2010 11:48:07 GMT duh [131] * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (added) - re-added TemplateSubjectField.groovy which was deleted in revision 126 Mon, 25 Jan 2010 11:36:49 GMT duh [130] * trunk/application.properties (modified) - reinstalled jquery plugin Mon, 25 Jan 2010 11:34:12 GMT duh [129] * trunk/web-app/js/jquery (deleted) * trunk/web-app/js/tm.js (copied) previous commit broke jquery. We use the jquery plugin which is now ... Mon, 25 Jan 2010 11:31:31 GMT duh [128] * trunk/web-app/js/jquery/jquery-1.3.2.min.js (deleted) previous commit broke jquery. We use the jquery plugin which is now ... Mon, 25 Jan 2010 11:30:48 GMT duh [127] * trunk/web-app/js/jquery/jquery-1.3.2.js (deleted) previous commit broke jquery. We use the jquery plugin which is now ... Mon, 25 Jan 2010 08:50:29 GMT jahn [126] * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (deleted) Mon, 25 Jan 2010 08:48:51 GMT jahn [125] * trunk/web-app/js/jquery (added) * trunk/web-app/js/jquery/jquery-1.3.2.js (added) * trunk/web-app/js/jquery/jquery-1.3.2.min.js (added) * trunk/web-app/js/jquery/tm.js (added) Unignore this for convenience. Also, added tm.js. If you don't like ... Mon, 25 Jan 2010 08:31:34 GMT jahn [124] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) The Term class has been seperately created in ... Mon, 25 Jan 2010 08:30:50 GMT jahn [123] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (modified) The Term class has been seperately created in ... Mon, 25 Jan 2010 08:14:13 GMT jahn [122] * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (deleted) The Term class has been seperately created in ... Mon, 25 Jan 2010 07:49:37 GMT jahn [121] * trunk/grails-app/views/event/createForEventDescription.gsp (added) * trunk/grails-app/views/event/create_1.gsp (added) * trunk/grails-app/views/event/create_auto.gsp (added) * trunk/grails-app/views/event/create_timepicker.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:49:27 GMT jahn [120] * trunk/grails-app/views/eventDescription (added) * trunk/grails-app/views/eventDescription/create.gsp (added) * trunk/grails-app/views/eventDescription/edit.gsp (added) * trunk/grails-app/views/eventDescription/list.gsp (added) * trunk/grails-app/views/eventDescription/show.gsp (added) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (added) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:49:05 GMT jahn [119] * trunk/grails-app/views/event (added) * trunk/grails-app/views/event/create.gsp (added) * trunk/grails-app/views/event/edit.gsp (added) * trunk/grails-app/views/event/list.gsp (added) * trunk/grails-app/views/event/partial.gsp (added) * trunk/grails-app/views/event/show.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:48:37 GMT jahn [118] * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (added) * trunk/grails-app/views/common/_jquerytmsetup.gsp (added) * trunk/grails-app/views/common/_partial.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:46:25 GMT jahn [117] * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:45:11 GMT jahn [116] * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:45:00 GMT jahn [115] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:44:20 GMT jahn [114] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:43:05 GMT jahn [113] * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:42:50 GMT jahn [112] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:40:43 GMT jahn [111] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:38:19 GMT jahn [110] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:38:03 GMT jahn [109] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (added) Submitted as part of Event editing. Mon, 25 Jan 2010 07:37:37 GMT jahn [108] * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (added) Submitted as part of Event editing. Fri, 22 Jan 2010 17:37:01 GMT duh [107] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (modified) - worked on the wizard inner workings - added date field element ... Fri, 22 Jan 2010 12:02:40 GMT keesvb [106] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (added) * trunk/grails-app/domain/dbnp/data (added) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (added) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (moved) * trunk/grails-app/domain/dbnp/data/Term.groovy (moved) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp (added) * trunk/grails-app/services/dbnp/clinicaldata (added) * trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (added) * trunk/grails-app/views/clinicalAssay (added) * trunk/grails-app/views/clinicalData (added) * trunk/src/java/dbnp (added) * trunk/src/java/dbnp/data (added) * trunk/src/java/dbnp/data/CleanDataLayer.java (added) * trunk/test/unit/dbnp/clinicaldata (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayInstanceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalDataLayerServiceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalFloatDataTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalStringDataTests.groovy (added) * trunk/test/unit/dbnp/data (added) * trunk/test/unit/dbnp/data/FeatureBaseTests.groovy (added) added first version of clean data layer specification and clinical ... Fri, 22 Jan 2010 11:37:14 GMT duh [105] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/web-app/js/wizard.js (modified) - Firefox 3.6 + firebug's XMLHttpRequest option break the wizard, ... Thu, 21 Jan 2010 13:01:09 GMT duh [104] * trunk/web-app/css/jquery-ui/images (added) * trunk/web-app/css/jquery-ui/images/ui-bg_flat_0_aaaaaa_40x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_flat_55_fbec88_40x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_75_d0e5f5_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_85_dfeffc_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_95_fef1ec_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_gloss-wave_55_5c9ccc_500x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_inset-hard_100_f5f8f9_1x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_inset-hard_100_fcfdfd_1x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_217bc0_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_2e83ff_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_469bdd_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_6da8d5_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_cd0a0a_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_d8e7f3_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_f9bd01_256x240.png (added) - added the jquery-ui 'Redmon' images Thu, 21 Jan 2010 12:56:10 GMT duh [103] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/elements (deleted) * trunk/grails-app/views/wizard/pages/_study.gsp (moved) * trunk/web-app/css/jquery-ui/images (deleted) * trunk/web-app/css/jquery-ui/jquery-ui-1.7.2.custom.css (added) - added error handling to the wizard - changed jquery-ui interface ... Wed, 20 Jan 2010 16:10:37 GMT duh [102] * trunk/application.properties (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) - forgot to rename the afterSuccess argument from handleHelpTooltips ... Wed, 20 Jan 2010 16:01:26 GMT duh [101] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_navigation.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/js/wizard.js (modified) - refactored the wizard initial page to dynamically load pageOne, ... Wed, 20 Jan 2010 13:50:23 GMT keesvb [100] * trunk/application.properties (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) small cosmetic changes, enabled Study list menu link Tue, 19 Jan 2010 16:38:50 GMT duh [99] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/wizard.css (modified) - created nicer tooltips Tue, 19 Jan 2010 16:18:30 GMT duh [98] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/web-app/js/jquery.qtip-1.0.0-rc3.min.js (added) * trunk/web-app/js/wizard.js (modified) - created nicer tooltips Tue, 19 Jan 2010 15:26:24 GMT duh [97] * trunk/grails-app/conf/BootStrap.groovy (modified) - moved study bootstrap data down into the development if statement Tue, 19 Jan 2010 15:18:33 GMT duh [96] * trunk/grails-app/taglib/GSCFTagLib.groovy (deleted) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_jquerysetup.gsp (deleted) * trunk/grails-app/views/common/_jqueryuisetup.gsp (deleted) * trunk/grails-app/views/layouts/main.gsp (modified) - as of jQuery 1.4.0.1 the submitToRemote behaviour has changed which ... Tue, 19 Jan 2010 14:39:33 GMT ademcan [95] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) list and show for the studies list Tue, 19 Jan 2010 14:05:59 GMT duh [94] * trunk/grails-app/conf/DataSource.groovy (modified) - made development datasource system dependent (so Adem can use his ... Tue, 19 Jan 2010 13:56:22 GMT duh [93] * trunk/grails-app/conf/DataSource.groovy (modified) - made development datasource system dependent (so Adem can use his ... Tue, 19 Jan 2010 13:25:45 GMT duh [92] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_jquerysetup.gsp (modified) * trunk/grails-app/views/subject (added) * trunk/grails-app/views/template (added) * trunk/grails-app/views/templateSubjectField (added) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/test/unit/dbnp/studycapturing/SubjectControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldControllerTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) - added sample template data in bootstrap - upgraded jQuery - ... Tue, 19 Jan 2010 13:11:11 GMT ademcan [91] * trunk/application.properties (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_backup.gsp (added) list and show for the studies list Fri, 15 Jan 2010 14:10:15 GMT duh [90] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (added) - refactered wizard prototype - added tooltip / help support Thu, 14 Jan 2010 16:44:28 GMT duh [89] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/wizard/elements (added) * trunk/grails-app/views/wizard/elements/_text.gsp (added) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/images/icons/famfamfam/help.png (added) - refactored some wizard code - templatizing and standardizing form ... Thu, 14 Jan 2010 14:00:05 GMT duh [88] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (added) * trunk/grails-app/views/wizard/common/_navigation.gsp (moved) * trunk/grails-app/views/wizard/common/_tabs.gsp (moved) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/grails-app/views/wizard/pages/_two.gsp (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/css/wizard.css (added) * trunk/web-app/images/spinner.gif (added) - refactored the wizard code a bit Wed, 13 Jan 2010 15:54:59 GMT duh [87] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_buttons.gsp (modified) * trunk/grails-app/views/wizard/common/_header.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/grails-app/views/wizard/pages/_two.gsp (modified) - set keyword expansion Wed, 13 Jan 2010 15:53:32 GMT duh [86] * trunk (modified) * trunk/application.properties (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (added) * trunk/grails-app/taglib/GSCFTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp (added) * trunk/grails-app/taglib/dbnp/studycapturing (added) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (added) * trunk/grails-app/views/wizard (added) * trunk/grails-app/views/wizard/common (added) * trunk/grails-app/views/wizard/common/_buttons.gsp (added) * trunk/grails-app/views/wizard/common/_header.gsp (added) * trunk/grails-app/views/wizard/common/_wizard.gsp (added) * trunk/grails-app/views/wizard/index.gsp (added) * trunk/grails-app/views/wizard/pages (added) * trunk/grails-app/views/wizard/pages/_one.gsp (added) * trunk/grails-app/views/wizard/pages/_three.gsp (added) * trunk/grails-app/views/wizard/pages/_two.gsp (added) * trunk/test/unit/dbnp/studycapturing/WizardControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/WizardTagLibTests.groovy (added) - proof of concept AJAX-ified Grails WebFlow based wizard - @see ... Wed, 13 Jan 2010 14:25:28 GMT ademcan [85] * trunk/grails-app/controllers/dbnp (added) * trunk/grails-app/controllers/dbnp/studycapturing (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/language (added) * trunk/grails-app/views/language/create.gsp (added) * trunk/grails-app/views/language/edit.gsp (added) * trunk/grails-app/views/language/list.gsp (added) * trunk/grails-app/views/language/show.gsp (added) * trunk/grails-app/views/study (added) * trunk/grails-app/views/study/create.gsp (added) * trunk/grails-app/views/study/edit.gsp (added) * trunk/grails-app/views/study/list.gsp (added) * trunk/grails-app/views/study/list_backup.gsp (added) * trunk/grails-app/views/study/show.gsp (added) * trunk/src/templates (added) * trunk/src/templates/artifacts (added) * trunk/src/templates/scaffolding (added) * trunk/src/templates/war (added) the templates for the Study class, I have modified the scaffolding view. Wed, 13 Jan 2010 12:55:45 GMT keesvb [84] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateFieldTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldsTests.groovy (added) updated domain classes: added comments, carried out some normalization Mon, 11 Jan 2010 13:44:03 GMT ademcan [83] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/TemplateController.groovy (deleted) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/test/unit/magetab/adf/TermsourceTests.groovy (added) * trunk/test/unit/magetab/idf/ExperimentalInfoTests.groovy (added) modification of some magetab domain classes Mon, 11 Jan 2010 09:37:17 GMT keesvb [82] * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/MAGEAssay.groovy (moved) renamed magetab Assay class to avoid name conflicts Mon, 11 Jan 2010 09:33:01 GMT keesvb [81] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (added) * trunk/test/unit/dbnp/studycapturing/AssayTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventDescriptionTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SampleTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SamplingEventTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) updated domain classes: added event description, sample and assay Thu, 07 Jan 2010 12:38:25 GMT keesvb [80] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (added) * trunk/grails-app/controllers/ProtocolController.groovy (added) * trunk/grails-app/controllers/ProtocolParameterController.groovy (added) * trunk/grails-app/controllers/TermController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/test/unit/OntologyControllerTests.groovy (added) * trunk/test/unit/ProtocolControllerTests.groovy (added) * trunk/test/unit/ProtocolParameterControllerTests.groovy (added) * trunk/test/unit/TermControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolInstanceTests.groovy (added) * trunk/tests (added) * trunk/tests/create_protocol_parameter (added) * trunk/tests/create_template_study (added) added Event and ProtocolInstance classes, updated DataSource to work ... Tue, 05 Jan 2010 16:32:25 GMT robertkerkhoven [79] * trunk/grails-app/domain/dbnp/transcriptomics/data (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (added) Added three domain classes for the storage of micro-array data. - ... Tue, 05 Jan 2010 10:55:20 GMT keesvb [78] * trunk/grails-app/controllers/TemplateController.groovy (added) * trunk/test/unit/TemplateControllerTests.groovy (added) added template controller Tue, 05 Jan 2010 10:54:42 GMT keesvb [77] * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (added) * trunk/test/unit/dbnp (added) * trunk/test/unit/dbnp/studycapturing (added) * trunk/test/unit/dbnp/studycapturing/GroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolParameterTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectGroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics (added) * trunk/test/unit/dbnp/transcriptomics/magetab (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ArrayDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/CompositeElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/DesignElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/FeatureTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixColumnTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowIdTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ReporterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/CommentTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/FactorTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/InvestigationDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ParameterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PersonTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PublicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/UserDefinedAttributeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/AssayTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DataObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/EdgeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/FactorValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/HybridizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ImageTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/LabeledExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/MaterialTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeListTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NormalizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ParameterValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProtocolApplicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProviderTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationshipTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ScanTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/URIValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/UserDefinedValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ValueTests.groovy (added) sorry, forgot to commit the classes