# # ChangeLog for trunk # # Generated by Trac 1.0.2 # Jan 18, 2021, 10:33:02 PM Tue, 08 Mar 2011 15:02:10 GMT robert@… [1601] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleController.groovy (added) * trunk/web-app/js/simpleWizard.js (modified) Tue, 08 Mar 2011 13:16:05 GMT work@… [1600] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) added some debugging lines Tue, 08 Mar 2011 13:06:41 GMT work@… [1599] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) to e or not to e Tue, 08 Mar 2011 13:00:24 GMT work@… [1598] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) and false! Tue, 08 Mar 2011 12:59:28 GMT work@… [1597] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) uncommented try/catch block Tue, 08 Mar 2011 10:20:31 GMT robert@… [1596] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) Solved #344 - retrieving module data is now done using POST Mon, 07 Mar 2011 17:31:52 GMT work@… [1595] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - some database upgrade scripts were always being executed, ... Mon, 07 Mar 2011 14:28:25 GMT robert@… [1594] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/controllers/nmc/PilotController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/assay/create.gsp (modified) * trunk/grails-app/views/assay/edit.gsp (modified) * trunk/grails-app/views/assay/list.gsp (modified) * trunk/grails-app/views/assay/show.gsp (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) Finishing touch after refactoring entity tokens (#329) Mon, 07 Mar 2011 14:02:17 GMT s.h.sikkema@… [1593] * trunk/grails-app/controllers/RestController.groovy (modified) de-commented: def beforeInterceptor = ... Mon, 07 Mar 2011 13:23:37 GMT work@… [1592] * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) - fb only on prod Mon, 07 Mar 2011 11:01:52 GMT robert@… [1591] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/simpleWizard/assays.gsp (modified) * trunk/grails-app/views/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/complexStudy.gsp (added) * trunk/grails-app/views/simpleWizard/existingSamples.gsp (added) * trunk/grails-app/views/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/overview.gsp (modified) * trunk/grails-app/views/simpleWizard/samples.gsp (modified) * trunk/grails-app/views/simpleWizard/save.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_samples.gsp (modified) Improved simple wizard so that is can edit studies Fri, 04 Mar 2011 15:28:45 GMT work@… [1590] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (modified) * trunk/test/webtest/gscf/EditStudyWebTests.groovy (modified) - fixing remaining test issues Fri, 04 Mar 2011 11:34:04 GMT s.h.sikkema@… [1589] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) Deleted 'cd..' which somehow got in there Fri, 04 Mar 2011 11:30:52 GMT s.h.sikkema@… [1588] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LoginController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LogoutController.groovy (modified) * trunk/grails-app/controllers/dbnp/exporter/ExporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleNotificationService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/src/templates/artifacts/Service.groovy (modified) * trunk/test/integration/RestControllerIntegrationTests.groovy (modified) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) * trunk/test/integration/dbnp/studycapturing (deleted) * trunk/test/integration/gscf/EventGroupTests.groovy (modified) * trunk/test/integration/gscf/ImporterTests.groovy (modified) * trunk/test/integration/gscf/SampleTests.groovy (modified) * trunk/test/integration/gscf/StudyTests.groovy (modified) * trunk/test/unit/RestControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (modified) Fixed tests (except webtests); cleaned up ... Fri, 04 Mar 2011 11:14:10 GMT s.h.sikkema@… [1587] * trunk/grails-app/conf/application.properties (deleted) Fri, 04 Mar 2011 09:08:04 GMT work@… [1586] * trunk/grails-app/views/home/index.gsp (modified) minor css change Thu, 03 Mar 2011 19:24:14 GMT work@… [1585] * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) moved text search method into Study domain Thu, 03 Mar 2011 19:02:44 GMT work@… [1584] * trunk/application.properties (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/SimpleQueryController.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecUser.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/web-app/js/highcharts.js (added) - did some more restyling of the home page (ticket #339) - ... Wed, 02 Mar 2011 16:40:25 GMT s.h.sikkema@… [1583] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayExporterTagLib.groovy (added) * trunk/grails-app/views/assay/compileExportData.gsp (modified) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (modified) UI improvements to assay exporter (ticket #159) Wed, 02 Mar 2011 16:38:59 GMT work@… [1582] * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (deleted) removed the AssayTagLib by request of Siemen Wed, 02 Mar 2011 09:40:40 GMT work@… [1581] * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/i18n/messages-nimble.properties (modified) * trunk/grails-app/i18n/messages-nimble_de.properties (modified) * trunk/grails-app/i18n/messages-nimble_pt.properties (modified) * trunk/grails-app/i18n/messages.properties (modified) * trunk/grails-app/i18n/messages.spring-security-ui.properties (modified) * trunk/grails-app/i18n/messages_de.properties (modified) * trunk/grails-app/i18n/messages_es.properties (modified) * trunk/grails-app/i18n/messages_fr.properties (modified) * trunk/grails-app/i18n/messages_it.properties (modified) * trunk/grails-app/i18n/messages_ja.properties (modified) * trunk/grails-app/i18n/messages_nl.properties (modified) * trunk/grails-app/i18n/messages_pt_BR.properties (modified) * trunk/grails-app/i18n/messages_ru.properties (modified) * trunk/grails-app/i18n/messages_th.properties (modified) * trunk/grails-app/i18n/messages_zh_CN.properties (modified) * trunk/grails-app/i18n/shiro.properties (modified) * trunk/grails-app/services/dbnp/modules/ModuleNotificationService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/SimpleWizardTagLib.groovy (modified) * trunk/grails-app/views/advancedQuery/_criteria.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultbuttons.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultsform.gsp (modified) * trunk/grails-app/views/advancedQuery/assayresults.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/assay/compileExportData.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (modified) * trunk/grails-app/views/simpleWizard/_javascripts.gsp (modified) * trunk/grails-app/views/simpleWizard/assays.gsp (modified) * trunk/grails-app/views/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/overview.gsp (modified) * trunk/grails-app/views/simpleWizard/samples.gsp (modified) * trunk/grails-app/views/simpleWizard/save.gsp (modified) * trunk/grails-app/views/simpleWizard/study.gsp (modified) set keyword expansion Wed, 02 Mar 2011 09:38:42 GMT work@… [1580] * trunk/src/templates/artifacts/Controller.groovy (modified) * trunk/src/templates/artifacts/DomainClass.groovy (modified) * trunk/src/templates/artifacts/Filters.groovy (modified) * trunk/src/templates/artifacts/Script.groovy (modified) * trunk/src/templates/artifacts/Service.groovy (modified) * trunk/src/templates/artifacts/TagLib.groovy (modified) * trunk/src/templates/artifacts/Tests.groovy (modified) * trunk/src/templates/artifacts/WebTest.groovy (modified) removed keyword expansion for artifact templates Tue, 01 Mar 2011 10:25:37 GMT robert@… [1579] * trunk/grails-app/controllers/RestController.groovy (modified) Using params.moduleURL instead of params.consumer for checking the ... Mon, 28 Feb 2011 17:47:26 GMT work@… [1578] * trunk/grails-app/views/common/_info.gsp (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/images/default_style/body_bg_155px.gif (moved) * trunk/web-app/images/default_style/body_bg_95px.gif (added) * trunk/web-app/images/default_style/header_120px.png (moved) * trunk/web-app/images/default_style/header_60px.png (added) - made a smaller header (60px instead of 120px) Mon, 28 Feb 2011 17:04:45 GMT robert@… [1577] * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) Resolved problems with module communication Mon, 28 Feb 2011 16:44:13 GMT robert@… [1576] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) - Solved locking problems with module communication - Fixed a null ... Mon, 28 Feb 2011 16:25:10 GMT work@… [1575] * trunk/web-app/css/default_style.css (modified) * trunk/web-app/js/topnav.js (modified) - resolves #339 menu issues Mon, 28 Feb 2011 11:13:55 GMT work@… [1574] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - updated mapping name column constraint database upgrade function to ... Mon, 28 Feb 2011 11:07:37 GMT robert@… [1573] * trunk/grails-app/views/study/show_assays.gsp (modified) Check for null values in study.assays list Mon, 28 Feb 2011 10:48:38 GMT work@… [1572] * trunk/application.properties (modified) - gdt updated to 0.0.18 Fri, 25 Feb 2011 16:28:46 GMT robert@… [1571] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) Another small bugfix Fri, 25 Feb 2011 16:18:49 GMT robert@… [1570] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PublicationController.groovy (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) Small bugfixes of bugs that appeared during deployment of ... Fri, 25 Feb 2011 16:07:50 GMT work@… [1569] * trunk/application.properties (modified) - apdated grails to 1.3.7 Fri, 25 Feb 2011 15:55:05 GMT j.saito@… [1568] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Added support for matching tempaltes that are present in system. In ... Fri, 25 Feb 2011 14:06:47 GMT work@… [1566] * trunk/grails-app/views/studyWizard/pages/_assays.gsp (modified) - resolved #333 Fri, 25 Feb 2011 13:27:48 GMT robert@… [1565] * trunk/grails-app/controllers/dbnp/studycapturing/PublicationController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/simpleWizard/study.gsp (modified) * trunk/web-app/css/simplewizard.css (modified) * trunk/web-app/css/templates.css (modified) Fixed #260 (study wizard in safari) and fixed a bug when adding a ... Fri, 25 Feb 2011 11:16:35 GMT work@… [1563] * trunk/application.properties (modified) - updated version to 0.6.5, tagging release as well Fri, 25 Feb 2011 10:16:09 GMT t.w.abma@… [1562] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added extra check in mapping step for date fields, someone entering ... Fri, 25 Feb 2011 09:33:49 GMT s.h.sikkema@… [1561] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Removed some imports and a reference to dbnp.studycapturing.Book to ... Thu, 24 Feb 2011 22:59:08 GMT j.saito@… [1560] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Added import methods for XML import of studies. Still not workig ... Thu, 24 Feb 2011 16:14:08 GMT s.h.sikkema@… [1559] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (added) * trunk/grails-app/views/assay/compileExportData.gsp (added) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (added) * trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) Assay export functionality Thu, 24 Feb 2011 15:07:54 GMT work@… [1558] * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) resolves #315 Thu, 24 Feb 2011 14:06:17 GMT work@… [1557] * trunk/application.properties (modified) -gdt to 0.0.17 Thu, 24 Feb 2011 12:38:17 GMT t.w.abma@… [1556] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - wizard error showing up too early removed, now only showing after ... Thu, 24 Feb 2011 10:15:00 GMT t.w.abma@… [1555] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - disabled key to prevent submission of form (JS) - using ... Wed, 23 Feb 2011 16:09:52 GMT work@… [1554] * trunk/grails-app/views/common/_info.gsp (modified) uptime -> build age Wed, 23 Feb 2011 15:32:09 GMT robert@… [1553] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (added) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/SimpleWizardTagLib.groovy (added) * trunk/grails-app/views/simpleWizard (added) * trunk/grails-app/views/simpleWizard/_javascripts.gsp (added) * trunk/grails-app/views/simpleWizard/assays.gsp (added) * trunk/grails-app/views/simpleWizard/columns.gsp (added) * trunk/grails-app/views/simpleWizard/missingFields.gsp (added) * trunk/grails-app/views/simpleWizard/overview.gsp (added) * trunk/grails-app/views/simpleWizard/samples.gsp (added) * trunk/grails-app/views/simpleWizard/save.gsp (added) * trunk/grails-app/views/simpleWizard/study.gsp (added) * trunk/test/unit/dbnp/studycapturing/SimpleWizardControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SimpleWizardTagLibTests.groovy (added) * trunk/web-app/css/buttons.css (modified) * trunk/web-app/css/simplewizard.css (added) * trunk/web-app/js/simpleWizard.js (added) * trunk/web-app/js/studywizard.js (modified) First version of a simple wizard Wed, 23 Feb 2011 12:25:46 GMT t.w.abma@… [1552] * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - duplicate fuzzymatched properties fixed, when a fuzzy match has ... Tue, 22 Feb 2011 16:45:11 GMT work@… [1551] * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (modified) - fixed webtests to work properly in hudson (which means, they only ... Tue, 22 Feb 2011 15:48:03 GMT work@… [1550] * trunk/application.properties (modified) - gdt to 0.0.16, cleanup and improved warning if something is not right Tue, 22 Feb 2011 15:22:01 GMT work@… [1549] * trunk/application.properties (modified) - gdt updated to 0.1.15 (fix for Ubuntu's java compiler visiting the ... Tue, 22 Feb 2011 14:45:25 GMT robert@… [1548] * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/advancedQuery/assayresults.gsp (modified) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/css/buttons.css (added) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/js/advancedQueryResults.js (modified) Preparation for using a simple wizard: some changes in tag libraries ... Tue, 22 Feb 2011 14:37:54 GMT work@… [1547] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapStudies.groovy (deleted) * trunk/grails-app/conf/dbnp/configuration/BootStrapTemplates.groovy (deleted) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (added) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (added) - renamed bootstraps to example Tue, 22 Feb 2011 12:57:15 GMT work@… [1546] * trunk/grails-app/conf/BootStrap.groovy (modified) test commit to trigger hudson Tue, 22 Feb 2011 12:47:28 GMT work@… [1545] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapTemplates.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) - removed obsolete bgdt imports Tue, 22 Feb 2011 12:02:46 GMT work@… [1544] * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_four.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_one.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_three.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_two.gsp (deleted) - resolved #315 - removed obsolete templates Tue, 22 Feb 2011 11:00:44 GMT work@… [1543] * trunk/application.properties (modified) - merged bgdt back into gdt due to numerous complications - gdt up ... Mon, 21 Feb 2011 19:49:51 GMT t.w.abma@… [1542] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - "existing*" string being removed after refreshing the first step in ... Mon, 21 Feb 2011 16:47:05 GMT work@… [1541] * trunk/grails-app/conf/Config.groovy (modified) - upload dir is now /tmp by default Mon, 21 Feb 2011 16:10:50 GMT robert@… [1540] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) Refactored studyWizardController so that methods can also work ... Mon, 21 Feb 2011 11:29:42 GMT robert@… [1539] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) Fixed #299: readers and writers are not correctly saved Thu, 17 Feb 2011 16:28:06 GMT t.w.abma@… [1538] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - fixed small "existing*" bug/feature with an extra check, so after a ... Thu, 17 Feb 2011 16:01:52 GMT work@… [1537] * trunk/application.properties (modified) - GDT up to 0.0.12 (dynamic injection of templateFields through ... Thu, 17 Feb 2011 15:52:50 GMT t.w.abma@… [1536] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/importer/pages/_page_one.gsp (modified) - fixed refresh of first page in import wizard, to fix: ... Thu, 17 Feb 2011 14:36:43 GMT t.w.abma@… [1535] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - fixed typo/missing quote in SQL-query upgrade script Thu, 17 Feb 2011 14:29:16 GMT t.w.abma@… [1534] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - added check to database upgrade SQL query to drop constraint for ... Thu, 17 Feb 2011 10:41:56 GMT robert@… [1533] * trunk/web-app/css/studywizard.css (modified) input style shouldn't be restricted to .ajaxFlow divs Thu, 17 Feb 2011 10:08:04 GMT t.w.abma@… [1532] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - added database upgrade SQL query to drop constraint for field ... Thu, 17 Feb 2011 09:53:25 GMT t.w.abma@… [1531] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added more detailed SQL exception after saving mappings Wed, 16 Feb 2011 16:31:38 GMT t.w.abma@… [1530] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) - added belongsTo relation to import mapping domain Wed, 16 Feb 2011 14:59:18 GMT t.w.abma@… [1529] * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) - importmapping domain change Wed, 16 Feb 2011 13:29:52 GMT t.w.abma@… [1528] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - fixed small refresh issue (lazy loading) Wed, 16 Feb 2011 13:22:09 GMT t.w.abma@… [1527] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) - Importermappings can now be fully retrieved and stored in step 2 of ... Wed, 16 Feb 2011 10:12:14 GMT robert@… [1526] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/views/advancedQuery/_criteria.gsp (modified) * trunk/grails-app/views/advancedQuery/assayresults.gsp (added) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) * trunk/src/groovy/dbnp/query/AssaySearch.groovy (added) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/js/advancedQuery.js (modified) Added assay search and improved query form Tue, 15 Feb 2011 16:12:25 GMT t.w.abma@… [1525] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_propertiesManager.gsp (deleted) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) * trunk/test/integration/gscf/ImporterTests.groovy (modified) - Importer tests on hold due to missing parse() method in Template ... Tue, 15 Feb 2011 14:05:23 GMT robert@… [1524] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/js/advancedQueryResults.js (modified) Refactored some of the querying stuff and built in 'check all' checkboxes Tue, 15 Feb 2011 11:06:15 GMT business@… [1523] * trunk/grails-app/conf/BootStrapAuthentication.groovy (deleted) * trunk/grails-app/conf/BootStrapStudies.groovy (deleted) these 2 files were present twice in svn, leading to problems with ... Mon, 14 Feb 2011 21:48:41 GMT t.w.abma@… [1522] * trunk/test/integration/gscf/ImporterTests.groovy (added) * trunk/test/integration/testfiles (added) * trunk/test/integration/testfiles/NTC_Experiment_test4.xls (added) * trunk/test/integration/testfiles/ntc_tudy_template.xml (added) - initial Importer Wizard integration test with XML template file and ... Mon, 14 Feb 2011 15:49:54 GMT robert@… [1521] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/dbnp (added) * trunk/grails-app/conf/dbnp/configuration (added) * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (added) * trunk/grails-app/conf/dbnp/configuration/BootStrapStudies.groovy (added) * trunk/grails-app/conf/dbnp/configuration/BootStrapTemplates.groovy (moved) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) Changes in samplesearch test related to #313 Mon, 14 Feb 2011 13:31:37 GMT robert@… [1520] * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) Fixed sample search integration test Mon, 14 Feb 2011 11:42:58 GMT business@… [1519] * trunk/grails-app/conf/BootStrap.groovy (modified) moved gdt package to org.dbnp, moved tests for RelTime, ... Mon, 14 Feb 2011 10:20:09 GMT j.saito@… [1518] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Fixed bug relating to Publication and SecUser. Mon, 14 Feb 2011 09:56:17 GMT robert@… [1517] * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) Bugfix in module communication Mon, 14 Feb 2011 08:46:11 GMT j.saito@… [1516] * trunk/grails-app/services/dbnp/studyexport (added) * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (added) Exporter for representing Study objects as XML and parsing them back. ... Fri, 11 Feb 2011 13:59:27 GMT t.w.abma@… [1515] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - added load/save button to mappings page - fuzzy button applies ... Thu, 10 Feb 2011 15:30:16 GMT t.w.abma@… [1514] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - removed popup solution for properties and changed it into simple ... Thu, 10 Feb 2011 15:07:30 GMT work@… [1513] * trunk/application.properties (modified) - fixed a crucial bug in the validation of TEXT template fields - ... Thu, 10 Feb 2011 12:04:32 GMT robert@… [1512] * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/views/advancedQuery/_criteria.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultbuttons.gsp (modified) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/css/datatables/demo_table_jui.css (modified) Improved query views Wed, 09 Feb 2011 19:55:29 GMT t.w.abma@… [1511] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_propertiesManager.gsp (added) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) * trunk/web-app/css/importer.css (modified) - added initial property manager (load/save import mappings) just in case Wed, 09 Feb 2011 16:35:22 GMT work@… [1510] * trunk/test/unit/dbnp/studycapturing/FileServiceTests.groovy (deleted) - FileService is in GDT. This test was already moved locally but ... Wed, 09 Feb 2011 15:33:23 GMT work@… [1509] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/FileController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/FileService.groovy (deleted) - gdt to 0.0.10 - bgdt to 0.0.4 - ajaxflow to 0.2.0 - removed ... Wed, 09 Feb 2011 10:10:38 GMT robert@… [1508] * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/FileService.groovy (modified) * trunk/web-app/js/studywizard.js (modified) - Made file upload directory configurable (#282) - Fixed bug in ... Tue, 08 Feb 2011 15:52:28 GMT robert@… [1507] * trunk/web-app/css/datatables (added) * trunk/web-app/css/datatables/demo_table_jui.css (added) Added css for query results Tue, 08 Feb 2011 15:49:23 GMT robert@… [1506] * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) Removed some comments Tue, 08 Feb 2011 14:53:49 GMT t.w.abma@… [1505] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - fuzzy matching and `don't import` improved in the properties step ... Tue, 08 Feb 2011 09:48:41 GMT s.h.sikkema@… [1504] * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SampleTests.groovy (modified) * trunk/test/integration/gscf/StudyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/unit/dbnp/query/StudySearchTests.groovy (modified) Partially fixed the integration tests Tue, 08 Feb 2011 09:30:56 GMT j.saito@… [1503] * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (modified) Added missing import line. Mon, 07 Feb 2011 15:32:07 GMT t.w.abma@… [1502] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - uploaded file in import wizard now checked for being an Excel ... Mon, 07 Feb 2011 15:07:54 GMT robert@… [1501] * trunk/grails-app/conf/config-ci.properties (modified) * trunk/grails-app/conf/config-dbnpdemo.properties (modified) * trunk/grails-app/conf/config-dbnptest.properties (modified) * trunk/grails-app/conf/config-development.properties (modified) * trunk/grails-app/conf/config-nmcdsptest.properties (modified) * trunk/grails-app/conf/config-production.properties (modified) * trunk/grails-app/conf/config-test.properties (modified) * trunk/grails-app/conf/config-www.properties (modified) * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) * trunk/grails-app/views/advancedQuery/_criteria.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultbuttons.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultsform.gsp (added) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/js/advancedQueryResults.js (added) * trunk/web-app/js/jquery.dataTables.min.js (added) * trunk/web-app/js/paginate.js (added) - Number of seconds for the rest controller to keep data in cache is ... Mon, 07 Feb 2011 11:57:40 GMT t.w.abma@… [1500] * trunk/grails-app/views/importer/pages/_page_one.gsp (modified) - swapped study and entity selector