# # ChangeLog for trunk/grails-app # # Generated by Trac 1.0.2 # Oct 29, 2020, 1:16:37 AM Thu, 27 Jan 2011 16:48:47 GMT work@… [1450] * trunk/grails-app/conf/Searchable.groovy (modified) - changed searchable config Thu, 27 Jan 2011 15:11:19 GMT work@… [1447] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) resolves issue #256 Thu, 27 Jan 2011 13:34:41 GMT robert@… [1446] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/services/dbnp/modules (added) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (moved) * trunk/grails-app/services/dbnp/modules/ModuleNotificationService.groovy (added) Implemented convenience method to call rest methods on modules Thu, 27 Jan 2011 12:43:36 GMT s.h.sikkema@… [1445] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (added) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) Rudimentary assay export functionality Wed, 26 Jan 2011 21:10:21 GMT work@… [1444] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - changed the view to use the static variable from gdt instead of ... Wed, 26 Jan 2011 20:47:40 GMT work@… [1443] * trunk/application.properties (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) * trunk/grails-app/views/importer/pages/_page_one.gsp (modified) * trunk/lib/xbean.jar (added) - refactored the importer to use the dynamic entities of gdt, instead ... Wed, 26 Jan 2011 16:02:05 GMT robert@… [1442] * trunk/grails-app/services/dbnp/studycapturing/SynchronizationService.groovy (modified) The new stable identifiers (see r1440 and #255) were not yet used ... Tue, 25 Jan 2011 16:57:37 GMT robert@… [1440] * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) Made the studytoken, assaytoken and sampletoken stable identifiers, ... Tue, 25 Jan 2011 15:39:18 GMT work@… [1439] * trunk/application.properties (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateEditorController.groovy (deleted) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/templateEditor (deleted) * trunk/web-app/css/templateEditor.css (deleted) * trunk/web-app/images/icons (deleted) * trunk/web-app/js/jquery.dataTables.min.js (deleted) * trunk/web-app/js/templateEditor.js (deleted) - move templateEditor into gdt plugin - refactored templateEditor - ... Mon, 24 Jan 2011 14:48:46 GMT robert@… [1436] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/lib/jaxrpc.jar (added) * trunk/lib/ols-client.jar (added) * trunk/src/groovy/dbnp/query/Criterion.groovy (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) Improved querying, fixed some tests and added imports of the GDT plugin Mon, 24 Jan 2011 11:12:21 GMT work@… [1435] * trunk/grails-app/conf/config-ci.properties (moved) * trunk/grails-app/conf/config-dbnpdemo.properties (moved) * trunk/grails-app/conf/config-dbnptest.properties (moved) * trunk/grails-app/conf/config-development.properties (moved) * trunk/grails-app/conf/config-nmcdsptest.properties (moved) * trunk/grails-app/conf/config-production.properties (moved) * trunk/grails-app/conf/config-test.properties (moved) * trunk/grails-app/conf/config-www.properties (moved) - moved configuration back to grails-app/conf Mon, 24 Jan 2011 10:50:20 GMT work@… [1434] * trunk/grails-app/views/layouts/main.gsp (modified) - no facebook like in development :) Sat, 22 Jan 2011 15:07:36 GMT robert@… [1432] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/lib (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SampleTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) Made querying aware of the templates being moved to a plugin. Also ... Fri, 21 Jan 2011 20:05:36 GMT work@… [1430] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/BootStrapStudies.groovy (modified) * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) * trunk/grails-app/conf/GrailsMelodyConfig.groovy (modified) * trunk/grails-app/conf/Searchable.groovy (modified) * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/conf/application.properties (modified) * trunk/grails-app/conf/spring/resources.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/controllers/SearchableController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LoginController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LogoutController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/RegisterController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/UserController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/UserRegistrationController.groovy (modified) * trunk/grails-app/controllers/dbnp/exporter/ExporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/QueryController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/SimpleQueryController.groovy (modified) * trunk/grails-app/controllers/dbnp/setup/SetupController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/AssayModuleController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/FileController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PersonAffiliationController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PersonController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PersonRoleController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PublicationController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateEditorController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TermEditorController.groovy (modified) * trunk/grails-app/controllers/nmc/PilotController.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/RegistrationCode.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecRole.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecUser.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecUserSecRole.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SessionAuthenticatedUser.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportCell.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportMapping.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportRecord.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Identity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Person.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonAffiliation.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonRole.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/StudyPerson.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/FileService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/SynchronizationService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/utils/SimpleXMLCodec.groovy (modified) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/grails-app/views/assay/create.gsp (modified) * trunk/grails-app/views/assay/edit.gsp (modified) * trunk/grails-app/views/assay/list.gsp (modified) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/grails-app/views/assay/show.gsp (modified) * trunk/grails-app/views/common/_demo_intro.gsp (modified) * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (modified) * trunk/grails-app/views/common/_info.gsp (modified) * trunk/grails-app/views/common/_jquerytmsetup.gsp (modified) * trunk/grails-app/views/common/_login_panel.gsp (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/email/_passwordReset.gsp (modified) * trunk/grails-app/views/email/_registrationConfirmationAdmin.gsp (modified) * trunk/grails-app/views/email/_registrationConfirmationUser.gsp (modified) * trunk/grails-app/views/error.gsp (modified) * trunk/grails-app/views/event/create.gsp (modified) * trunk/grails-app/views/event/createForEventDescription.gsp (modified) * trunk/grails-app/views/event/create_1.gsp (modified) * trunk/grails-app/views/event/create_auto.gsp (modified) * trunk/grails-app/views/event/create_timepicker.gsp (modified) * trunk/grails-app/views/event/edit.gsp (modified) * trunk/grails-app/views/event/list.gsp (modified) * trunk/grails-app/views/event/partial.gsp (modified) * trunk/grails-app/views/event/show.gsp (modified) * trunk/grails-app/views/exporter/index.gsp (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/importer/common/_ajaxflow.gsp (modified) * trunk/grails-app/views/importer/common/_datapreview.gsp (modified) * trunk/grails-app/views/importer/common/_error.gsp (modified) * trunk/grails-app/views/importer/common/_failedcells.gsp (modified) * trunk/grails-app/views/importer/common/_missingproperties.gsp (modified) * trunk/grails-app/views/importer/common/_navigation.gsp (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_page_footer.gsp (modified) * trunk/grails-app/views/importer/common/_page_header.gsp (modified) * trunk/grails-app/views/importer/common/_please_wait.gsp (modified) * trunk/grails-app/views/importer/common/_postview.gsp (modified) * trunk/grails-app/views/importer/common/_preview.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) * trunk/grails-app/views/importer/common/_properties_vertical.gsp (modified) * trunk/grails-app/views/importer/common/_refresh_flow.gsp (modified) * trunk/grails-app/views/importer/common/_tabs.gsp (modified) * trunk/grails-app/views/importer/index.gsp (modified) * trunk/grails-app/views/importer/pages/_error.gsp (modified) * trunk/grails-app/views/importer/pages/_final_page.gsp (modified) * trunk/grails-app/views/importer/pages/_page_four.gsp (modified) * trunk/grails-app/views/importer/pages/_page_one.gsp (modified) * trunk/grails-app/views/importer/pages/_page_three.gsp (modified) * trunk/grails-app/views/importer/pages/_page_two.gsp (modified) * trunk/grails-app/views/layouts/dialog.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/layouts/nimble.gsp (modified) * trunk/grails-app/views/load/index.gsp (modified) * trunk/grails-app/views/login/auth.gsp (modified) * trunk/grails-app/views/login/denied.gsp (modified) * trunk/grails-app/views/person/create.gsp (modified) * trunk/grails-app/views/person/edit.gsp (modified) * trunk/grails-app/views/person/list.gsp (modified) * trunk/grails-app/views/person/show.gsp (modified) * trunk/grails-app/views/personAffiliation/create.gsp (modified) * trunk/grails-app/views/personAffiliation/edit.gsp (modified) * trunk/grails-app/views/personAffiliation/list.gsp (modified) * trunk/grails-app/views/personAffiliation/show.gsp (modified) * trunk/grails-app/views/personRole/create.gsp (modified) * trunk/grails-app/views/personRole/edit.gsp (modified) * trunk/grails-app/views/personRole/list.gsp (modified) * trunk/grails-app/views/personRole/show.gsp (modified) * trunk/grails-app/views/pilot/edit.gsp (modified) * trunk/grails-app/views/pilot/index.gsp (modified) * trunk/grails-app/views/pilot/list.gsp (modified) * trunk/grails-app/views/pilot/show.gsp (modified) * trunk/grails-app/views/publication/add.gsp (modified) * trunk/grails-app/views/publication/create.gsp (modified) * trunk/grails-app/views/publication/edit.gsp (modified) * trunk/grails-app/views/publication/list.gsp (modified) * trunk/grails-app/views/publication/show.gsp (modified) * trunk/grails-app/views/query/common/_error.gsp (modified) * trunk/grails-app/views/query/common/_navigation.gsp (modified) * trunk/grails-app/views/query/common/_query.gsp (modified) * trunk/grails-app/views/query/common/_tabs.gsp (modified) * trunk/grails-app/views/query/index.gsp (modified) * trunk/grails-app/views/query/mainPage.gsp (modified) * trunk/grails-app/views/query/pages/_biomarker.gsp (modified) * trunk/grails-app/views/query/pages/_group.gsp (modified) * trunk/grails-app/views/query/pages/_inputQuery.gsp (modified) * trunk/grails-app/views/query/pages/_result.gsp (modified) * trunk/grails-app/views/query/pages/_sample.gsp (modified) * trunk/grails-app/views/query/pages/_study.gsp (modified) * trunk/grails-app/views/query/results.gsp (modified) * trunk/grails-app/views/query/selectsample.gsp (modified) * trunk/grails-app/views/register/forgotPassword.gsp (modified) * trunk/grails-app/views/register/index.gsp (modified) * trunk/grails-app/views/register/resetPassword.gsp (modified) * trunk/grails-app/views/sandbox/index.gsp (modified) * trunk/grails-app/views/searchable/index.gsp (modified) * trunk/grails-app/views/setup/common/_wizard.gsp (modified) * trunk/grails-app/views/setup/index.gsp (modified) * trunk/grails-app/views/setup/pages/_start.gsp (modified) * trunk/grails-app/views/simpleQuery/common/_query.gsp (modified) * trunk/grails-app/views/simpleQuery/mainPage.gsp (modified) * trunk/grails-app/views/study/create.gsp (modified) * trunk/grails-app/views/study/createTimelineBandsJs.gsp (modified) * trunk/grails-app/views/study/edit.gsp (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) * trunk/grails-app/views/study/show_events_table.gsp (modified) * trunk/grails-app/views/study/show_events_timeline.gsp (modified) * trunk/grails-app/views/study/show_persons.gsp (modified) * trunk/grails-app/views/study/show_publications.gsp (modified) * trunk/grails-app/views/study/show_samples.gsp (modified) * trunk/grails-app/views/study/show_subjects.gsp (modified) * trunk/grails-app/views/studyWizard/common/_ajaxflow.gsp (modified) * trunk/grails-app/views/studyWizard/common/_error.gsp (modified) * trunk/grails-app/views/studyWizard/common/_navigation.gsp (modified) * trunk/grails-app/views/studyWizard/common/_on_page.gsp (modified) * trunk/grails-app/views/studyWizard/common/_page_footer.gsp (modified) * trunk/grails-app/views/studyWizard/common/_page_header.gsp (modified) * trunk/grails-app/views/studyWizard/common/_please_wait.gsp (modified) * trunk/grails-app/views/studyWizard/common/_refresh_flow.gsp (modified) * trunk/grails-app/views/studyWizard/common/_tabs.gsp (modified) * trunk/grails-app/views/studyWizard/index.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_assay_groups.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_assays.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_confirmation.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_done.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_error.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_final_page.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_groups.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_modify.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_four.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_one.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_three.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_two.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_redirect.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_samples.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_samples_previous_warning.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_start.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_study.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_subjects.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_unassigned_samplingEvent_warning.gsp (modified) * trunk/grails-app/views/template/export.gsp (modified) * trunk/grails-app/views/template/handleImportedFile.gsp (modified) * trunk/grails-app/views/template/importTemplate.gsp (modified) * trunk/grails-app/views/template/saveImportedTemplates.gsp (modified) * trunk/grails-app/views/template/xml.gsp (modified) * trunk/grails-app/views/templateEditor/_ontologyDialog.gsp (modified) * trunk/grails-app/views/templateEditor/compare.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_available.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_disabledFieldForm.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_domainField.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_fieldForm.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liField.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldDomain.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldInUse.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldNotInUse.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldSelected.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liTemplate.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liTemplateEditable.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liTemplateNonEditable.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_selected.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_templateForm.gsp (modified) * trunk/grails-app/views/templateEditor/error.gsp (modified) * trunk/grails-app/views/templateEditor/index.gsp (modified) * trunk/grails-app/views/templateEditor/template.gsp (modified) * trunk/grails-app/views/termEditor/pages/terms.gsp (modified) * trunk/grails-app/views/user/create.gsp (modified) * trunk/grails-app/views/user/edit.gsp (modified) * trunk/grails-app/views/user/search.gsp (modified) * trunk/grails-app/views/userRegistration/add.gsp (modified) * trunk/grails-app/views/userRegistration/confirmAdmin.gsp (modified) * trunk/grails-app/views/userRegistration/confirmUser.gsp (modified) * trunk/grails-app/views/userRegistration/index.gsp (modified) * trunk/grails-app/views/userRegistration/profile.gsp (modified) * trunk/src/groovy/dbnp/query/Criterion.groovy (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) * trunk/src/groovy/dbnp/rest/common/CommunicationManager.groovy (modified) * trunk/src/groovy/nl/metabolomicscentre/dsp/http/BasicAuthentication.groovy (modified) * trunk/src/java/config-ci.properties (modified) * trunk/src/java/config-dbnpdemo.properties (modified) * trunk/src/java/config-dbnptest.properties (modified) * trunk/src/java/config-development.properties (modified) * trunk/src/java/config-nmcdsptest.properties (modified) * trunk/src/java/config-production.properties (modified) * trunk/src/java/config-test.properties (modified) * trunk/src/java/config-www.properties (modified) * trunk/src/java/dbnp/data/CleanDataLayer.java (modified) * trunk/src/sass/_rounded.sass (modified) * trunk/src/sass/_uielements.sass (modified) * trunk/src/templates/artifacts/Controller.groovy (modified) * trunk/src/templates/artifacts/DomainClass.groovy (modified) * trunk/src/templates/artifacts/Filters.groovy (modified) * trunk/src/templates/artifacts/Script.groovy (modified) * trunk/src/templates/artifacts/Service.groovy (modified) * trunk/src/templates/artifacts/TagLib.groovy (modified) * trunk/src/templates/artifacts/Tests.groovy (modified) * trunk/src/templates/artifacts/WebTest.groovy (modified) * trunk/src/templates/scaffolding/Controller.groovy (modified) * trunk/src/templates/scaffolding/create.gsp (modified) * trunk/src/templates/scaffolding/edit.gsp (modified) * trunk/src/templates/scaffolding/list.gsp (modified) * trunk/src/templates/scaffolding/renderEditor.template (modified) * trunk/src/templates/scaffolding/show.gsp (modified) * trunk/src/templates/war/web.xml (modified) * trunk/test/integration/RestControllerTests.groovy (modified) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) * trunk/test/integration/gscf/EventGroupTests.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SampleTests.groovy (modified) * trunk/test/integration/gscf/StudyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/unit/HomeControllerTests.groovy (modified) * trunk/test/unit/RestControllerTests.groovy (modified) * trunk/test/unit/SandboxControllerTests.groovy (modified) * trunk/test/unit/SearchableControllerTests.groovy (modified) * trunk/test/unit/StudyTests.groovy (modified) * trunk/test/unit/dbnp/authentication/AuthenticationServiceTests.groovy (modified) * trunk/test/unit/dbnp/authentication/GSCFUserDetailsServiceTests.groovy (modified) * trunk/test/unit/dbnp/authentication/GSCFUserDetailsTests.groovy (modified) * trunk/test/unit/dbnp/authentication/RegisterControllerTests.groovy (modified) * trunk/test/unit/dbnp/authentication/SessionAuthenticatedUserTests.groovy (modified) * trunk/test/unit/dbnp/authentication/UserTests.groovy (modified) * trunk/test/unit/dbnp/data/FeatureBaseTests.groovy (modified) * trunk/test/unit/dbnp/data/OntologyControllerTests.groovy (modified) * trunk/test/unit/dbnp/data/TermControllerTests.groovy (modified) * trunk/test/unit/dbnp/importer/CellTests.groovy (modified) * trunk/test/unit/dbnp/importer/ColumnTests.groovy (modified) * trunk/test/unit/dbnp/importer/ImportRecordTests.groovy (modified) * trunk/test/unit/dbnp/importer/ImporterControllerTests.groovy (modified) * trunk/test/unit/dbnp/importer/ImporterServiceTests.groovy (modified) * trunk/test/unit/dbnp/importer/ImporterTagLibTests.groovy (modified) * trunk/test/unit/dbnp/query/CriterionTests.groovy (modified) * trunk/test/unit/dbnp/query/QueryControllerTests.groovy (modified) * trunk/test/unit/dbnp/query/SearchTests.groovy (modified) * trunk/test/unit/dbnp/query/StudySearchTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayModuleControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/EventDescriptionTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/EventGroupTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/EventTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/FileControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/FileServiceTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/GroupTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/OntologyTermTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/OntologyTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/PersonAffiliationControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/PersonControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/PersonRoleControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/ProtocolInstanceTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/ProtocolParameterTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/ProtocolTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/PublicationControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/RelTimeTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SampleTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SamplingEventTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SimpleQueryControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/StudyControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SubjectControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SubjectGroupTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/SubjectTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateEditorControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateEntityTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateFieldFileTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateFieldTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateStudyFieldTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TermEditorControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/WizardControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/WizardTagLibTests.groovy (modified) * trunk/test/unit/dbnp/user/AuthServiceTests.groovy (modified) * trunk/test/unit/gscf/SynchronizationServiceTests.groovy (modified) * trunk/test/webtest/conf/webtest.properties (modified) * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (modified) * trunk/test/webtest/gscf/EditStudyWebTests.groovy (modified) - set keyword expansion Fri, 21 Jan 2011 18:37:02 GMT work@… [1426] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BootStrapStudies.groovy (modified) * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (deleted) * trunk/grails-app/controllers/dbnp/data (deleted) * trunk/grails-app/controllers/dbnp/exporter/ExporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/AssayModuleController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (deleted) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (deleted) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateEditorController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/TermEditorController.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecUser.groovy (modified) * trunk/grails-app/domain/dbnp/data (deleted) * trunk/grails-app/domain/dbnp/importer/ImportCell.groovy (modified) * trunk/grails-app/domain/dbnp/importer/ImportRecord.groovy (modified) * trunk/grails-app/domain/dbnp/importer/MappingColumn.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Person.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonAffiliation.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/PersonRole.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/RelTime.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/StudyPerson.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/TemplateEntity.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldListItem.groovy (deleted) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (deleted) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/SynchronizationService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_events_table.gsp (modified) * trunk/lib/ontoCAT_v0.9.6.1.jar (deleted) * trunk/lib/xstream-1.3.1.jar (deleted) * trunk/src/groovy/dbnp/query/Criterion.groovy (modified) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) - Resolved part of improvement #225 - refactored the template model ... Fri, 21 Jan 2011 15:37:54 GMT s.h.sikkema@… [1425] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/views/assay/selectAssay.gsp (moved) * trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) Rudimentary assay export functionality Fri, 21 Jan 2011 15:30:04 GMT robert@… [1424] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/RelTime.groovy (modified) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (added) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/src/groovy/dbnp/query/Criterion.groovy (added) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/src/groovy/dbnp/query/StudySearch.groovy (modified) * trunk/test/integration/dbnp/query (added) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (added) * trunk/test/unit/FeedbackControllerTests.groovy (deleted) * trunk/test/unit/dbnp/authentication/AuthenticateControllerTests.groovy (deleted) * trunk/test/unit/dbnp/authentication/AuthenticationTagLibTests.groovy (deleted) * trunk/test/unit/dbnp/clinicaldata (deleted) * trunk/test/unit/dbnp/query/CriterionTests.groovy (added) * trunk/test/unit/dbnp/query/SearchTests.groovy (modified) * trunk/test/unit/dbnp/query/StudySearchTests.groovy (added) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/js/advancedQuery.js (modified) Improved querying and created a possibility to search for assays Thu, 20 Jan 2011 17:32:41 GMT work@… [1422] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - fixed importer issue with the authentication service not being ... Thu, 20 Jan 2011 17:13:33 GMT work@… [1421] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - fixed importer issue with the authentication service not being ... Thu, 20 Jan 2011 15:28:45 GMT work@… [1419] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - importer title fixed - indentation fixed - all fixed time for drinks Thu, 20 Jan 2011 15:17:21 GMT work@… [1418] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - enabled authentication in importer Thu, 20 Jan 2011 15:10:50 GMT work@… [1417] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - did some extreme programming with Tjeerd to fix issues in the ... Wed, 19 Jan 2011 15:01:08 GMT t.w.abma@… [1416] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - again fixed the importer, persisting seemed to work fine, but ... Tue, 18 Jan 2011 19:41:42 GMT robert@… [1415] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (added) * trunk/grails-app/views/advancedQuery (added) * trunk/grails-app/views/advancedQuery/index.gsp (added) * trunk/grails-app/views/advancedQuery/results.gsp (added) * trunk/grails-app/views/advancedQuery/studyresults.gsp (added) * trunk/src/groovy/dbnp/query (added) * trunk/src/groovy/dbnp/query/SampleSearch.groovy (added) * trunk/src/groovy/dbnp/query/Search.groovy (added) * trunk/src/groovy/dbnp/query/StudySearch.groovy (added) * trunk/test/unit/dbnp/query/SearchTests.groovy (added) * trunk/web-app/css/advancedQuery.css (added) * trunk/web-app/js/advancedQuery.js (added) First version of advanced querying Tue, 18 Jan 2011 15:38:58 GMT work@… [1414] * trunk/grails-app/conf/Config.groovy (modified) * trunk/src/java/config-ci.properties (moved) * trunk/src/java/config-dbnpdemo.properties (moved) * trunk/src/java/config-dbnptest.properties (moved) * trunk/src/java/config-development.properties (moved) * trunk/src/java/config-nmcdsptest.properties (moved) * trunk/src/java/config-production.properties (moved) * trunk/src/java/config-test.properties (moved) * trunk/src/java/config-www.properties (moved) - moved the environment specific properties files to src/java to make ... Tue, 18 Jan 2011 15:07:11 GMT work@… [1413] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removed 'tab' logic from importercontroller Tue, 18 Jan 2011 14:51:25 GMT t.w.abma@… [1411] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/importer/pages/_final_page.gsp (modified) - cleaned up importer service and controller (and removed flow ... Tue, 18 Jan 2011 14:51:12 GMT work@… [1410] * trunk/grails-app/views/importer/common/_tabs.gsp (modified) - no clickable tabs Tue, 18 Jan 2011 14:49:49 GMT work@… [1409] * trunk/grails-app/views/importer/common/_tabs.gsp (modified) - no clickable tabs Tue, 18 Jan 2011 12:43:11 GMT work@… [1407] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - fixes an issue with database upgrade script Tue, 18 Jan 2011 12:12:24 GMT work@… [1406] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - test fix for database upgrade script Tue, 18 Jan 2011 10:09:41 GMT business@… [1405] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) trigger ci Tue, 18 Jan 2011 09:52:46 GMT business@… [1404] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) small fix Tue, 18 Jan 2011 09:46:12 GMT business@… [1403] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) fix recurring issue with TEXT fields Fri, 14 Jan 2011 09:47:28 GMT t.w.abma@… [1402] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - minor fix in saveDatamatrix method in ImporterService, by adding ... Thu, 13 Jan 2011 16:31:20 GMT business@… [1399] * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) forgot class import Thu, 13 Jan 2011 16:29:54 GMT business@… [1398] * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) make sure manual adding of ontologies is only done in development and ... Thu, 13 Jan 2011 16:23:27 GMT work@… [1397] * trunk/grails-app/controllers/HomeController.groovy (modified) - disable redirect into setup wizard as there is no setup wizard yet Thu, 13 Jan 2011 14:47:51 GMT t.w.abma@… [1394] * trunk/grails-app/views/importer/pages/_final_page.gsp (modified) - added JS variable te get rid of warning when wanting to leave the ... Thu, 13 Jan 2011 14:41:22 GMT work@… [1393] * trunk/grails-app/views/studyWizard/pages/_done.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_error.gsp (modified) - fixed typo's Thu, 13 Jan 2011 14:15:59 GMT work@… [1392] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) - resolves edit study wizard issues, main ticket #275 Thu, 13 Jan 2011 14:10:18 GMT t.w.abma@… [1391] * trunk/grails-app/views/importer/common/_missingproperties.gsp (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) - added slider to mappings step in import wizard Thu, 13 Jan 2011 12:03:36 GMT work@… [1390] * trunk (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) - quicksave sets the study page to page 7 (done) - set svn ignore Thu, 13 Jan 2011 09:53:50 GMT t.w.abma@… [1388] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/pages/_page_one.gsp (modified) - added popup dialog with warning for first page of importer when not ... Thu, 13 Jan 2011 08:45:59 GMT t.w.abma@… [1387] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - authentication check added Wed, 12 Jan 2011 23:32:04 GMT business@… [1386] * trunk/grails-app/conf/BootStrapStudies.groovy (modified) * trunk/grails-app/views/templateEditor/elements/_boolean.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_date.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_double.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_fieldForm.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_file.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_liFieldDomain.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldInUse.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldNotInUse.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_liFieldSelected.gsp (modified) * trunk/grails-app/views/templateEditor/elements/_long.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_module.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_ontologyterm.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_reltime.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_string.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_stringlist.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_template.gsp (deleted) * trunk/grails-app/views/templateEditor/elements/_text.gsp (deleted) change which hopefully fixes the first time run errors about ... Wed, 12 Jan 2011 23:24:47 GMT business@… [1385] * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (modified) changed templatefieldtype descriptions according to #268 Wed, 12 Jan 2011 21:00:59 GMT business@… [1384] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/config-nmcdsptest.properties (copied) * trunk/grails-app/conf/config-test.properties (copied) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/test/webtest (added) * trunk/test/webtest/conf (added) * trunk/test/webtest/conf/webtest.properties (added) * trunk/test/webtest/gscf (added) * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (added) added webtest plugin and first (working) webtest, renamed 'test' ... Wed, 12 Jan 2011 16:37:08 GMT work@… [1383] * trunk/grails-app/conf/Config.groovy (modified) - removed jquery comment from config.groovy Wed, 12 Jan 2011 16:35:48 GMT work@… [1382] * trunk/application.properties (modified) * trunk/grails-app/conf/Config.groovy (modified) - upgraded ajaxflow to 0.1.16 --> grails 1.3.4 support - upgraded ... Wed, 12 Jan 2011 16:29:31 GMT t.w.abma@… [1381] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removing cells, concurrentModificationException fixed? Wed, 12 Jan 2011 16:14:16 GMT t.w.abma@… [1380] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removing cells, concurrentModificationException fixed? Wed, 12 Jan 2011 16:10:02 GMT t.w.abma@… [1379] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removing cells, concurrentModificationException fixed? Wed, 12 Jan 2011 15:59:00 GMT t.w.abma@… [1378] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removing cells, concurrentModificationException fixed? Wed, 12 Jan 2011 15:50:46 GMT t.w.abma@… [1377] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - removing cells, concurrentModificationException fixed? Wed, 12 Jan 2011 14:59:03 GMT t.w.abma@… [1376] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - casting errors are nog being ignored, but are at least logged, ... Wed, 12 Jan 2011 14:09:09 GMT work@… [1375] * trunk/grails-app/views/importer/common/_error.gsp (modified) * trunk/grails-app/views/studyWizard/common/_error.gsp (modified) resolves issue #274 Wed, 12 Jan 2011 13:42:06 GMT business@… [1373] * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) added extra check in sample validation to avoid NPEs in case of ... Wed, 12 Jan 2011 13:13:57 GMT t.w.abma@… [1372] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - moved debug statement (locally no errors, but on CI gives NPE) Wed, 12 Jan 2011 13:09:02 GMT t.w.abma@… [1371] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - moved debug statement (locally no errors, but on CI gives NPE) Wed, 12 Jan 2011 12:53:32 GMT t.w.abma@… [1370] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added debug Wed, 12 Jan 2011 11:52:42 GMT t.w.abma@… [1369] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added debug Wed, 12 Jan 2011 11:12:21 GMT t.w.abma@… [1368] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added debug Wed, 12 Jan 2011 10:50:56 GMT t.w.abma@… [1367] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/importer/common/_error.gsp (modified) * trunk/grails-app/views/importer/pages/_page_three.gsp (modified) - added dialog (based on study wizard) for more detailed information ... Tue, 11 Jan 2011 18:15:39 GMT robert@… [1366] * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (modified) Fixed bug with AssayModule.notify property (see #269) Tue, 11 Jan 2011 17:26:47 GMT work@… [1365] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - resolves issue #269, performing database upgrade if required ... Tue, 11 Jan 2011 16:25:35 GMT work@… [1364] * trunk/grails-app/conf/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/config-ci.properties (modified) * trunk/grails-app/conf/config-dbnpdemo.properties (modified) * trunk/grails-app/conf/config-dbnptest.properties (modified) * trunk/grails-app/conf/config-development.properties (modified) * trunk/grails-app/conf/config-production.properties (modified) * trunk/grails-app/conf/config-test.properties (modified) * trunk/grails-app/conf/config-www.properties (modified) - and another one for issue #219, moved authentication to the ... Tue, 11 Jan 2011 15:08:33 GMT work@… [1363] * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/config-ci.properties (moved) * trunk/grails-app/conf/config-dbnpdemo.properties (moved) * trunk/grails-app/conf/config-dbnptest.properties (moved) * trunk/grails-app/conf/config-development.properties (moved) * trunk/grails-app/conf/config-production.properties (moved) * trunk/grails-app/conf/config-test.properties (moved) * trunk/grails-app/conf/config-www.properties (moved) - and another one for issue #219 Tue, 11 Jan 2011 14:43:00 GMT work@… [1362] * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) - and another one for issue #219 Tue, 11 Jan 2011 14:33:27 GMT work@… [1361] * trunk/ci-config.properties (deleted) * trunk/dbnpdemo-config.properties (deleted) * trunk/dbnptest-config.properties (deleted) * trunk/development-config.properties (deleted) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/application.properties (added) * trunk/grails-app/conf/ci-config.properties (added) * trunk/grails-app/conf/dbnpdemo-config.properties (added) * trunk/grails-app/conf/dbnptest-config.properties (added) * trunk/grails-app/conf/development-config.properties (added) * trunk/grails-app/conf/production-config.properties (added) * trunk/grails-app/conf/test-config.properties (added) * trunk/grails-app/conf/www-config.properties (added) * trunk/production-config.properties (deleted) * trunk/test-config.properties (deleted) * trunk/www-config.properties (deleted) - properties were not loaded in a war, trying a different location - #219 Tue, 11 Jan 2011 14:14:21 GMT work@… [1360] * trunk/ci-config.properties (added) * trunk/dbnpdemo-config.properties (added) * trunk/dbnptest-config.properties (added) * trunk/development-config.properties (added) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/production-config.properties (added) * trunk/test-config.properties (added) * trunk/www-config.properties (added) - moving application configuration out of Config.groovy and ... Tue, 11 Jan 2011 13:09:54 GMT work@… [1359] * trunk/grails-app/views/studyWizard/common/_error.gsp (modified) - setting max height in error dialog Tue, 11 Jan 2011 11:46:56 GMT t.w.abma@… [1358] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - fixed study.id error when logged in as new user and trying to ... Mon, 10 Jan 2011 15:44:44 GMT robert@… [1357] * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayModule.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/SynchronizationService.groovy (added) * trunk/test/unit/gscf (added) * trunk/test/unit/gscf/SynchronizationServiceTests.groovy (added) Implemented module notification when a study changes (#259) Mon, 10 Jan 2011 09:58:31 GMT robert@… [1356] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) Fixed message in #212 Fri, 07 Jan 2011 17:12:04 GMT work@… [1353] * trunk/application.properties (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/studyWizard/pages/_assays.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_subjects.gsp (modified) - fixed some issues with ajaxbuttons that were still left unworking ... Fri, 07 Jan 2011 15:51:56 GMT work@… [1352] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/views/studyWizard/pages/_wait.gsp (deleted) - removed the 'wait for save page' as this is already being handled ... Fri, 07 Jan 2011 15:10:12 GMT work@… [1351] * trunk/grails-app/domain/dbnp/studycapturing/Identity.groovy (modified) - fix for Javassist issue #254, needs some thorough testing... Fri, 07 Jan 2011 15:09:49 GMT work@… [1350] * trunk/grails-app/domain/dbnp/studycapturing/Identity.groovy (modified) - fix for Javassist issue #254, needs some thorough testing... Fri, 07 Jan 2011 15:08:48 GMT work@… [1349] * trunk/grails-app/domain/dbnp/studycapturing/Identity.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) - fix for Javassist issue #254, needs some thorough testing... Fri, 07 Jan 2011 13:05:40 GMT work@… [1348] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) - fix for Javassist issue #254, needs some thorough testing... Fri, 07 Jan 2011 12:46:37 GMT work@… [1347] * trunk/grails-app/conf/Config.groovy (modified) - disabled loglevel info Fri, 07 Jan 2011 08:22:56 GMT m.s.vanvliet@… [1346] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) Added a timer to the Filters to monitor the load of controller/view Thu, 06 Jan 2011 16:33:32 GMT business@… [1341] * trunk/grails-app/conf/BootStrapTemplates.groovy (modified) fix for development environment to circumvent BioPortal problems Wed, 05 Jan 2011 14:10:14 GMT work@… [1339] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/i18n/messages_nl.properties (modified) - fixed spelling error - removed validation in 'add subject' logic ... Wed, 05 Jan 2011 13:49:15 GMT work@… [1338] * trunk/grails-app/i18n/messages_nl.properties (modified) - must --> moet een Wed, 05 Jan 2011 13:48:26 GMT work@… [1337] * trunk/grails-app/i18n/messages_nl.properties (modified) - moest --> moet Wed, 05 Jan 2011 13:04:41 GMT work@… [1336] * trunk/grails-app/views/importer/index.gsp (modified) - importer used wizard.css instead of new studywizard.css Wed, 05 Jan 2011 12:53:35 GMT t.w.abma@… [1335] * trunk/grails-app/views/importer/common/_on_page.gsp (modified) - added baseUrl variable to the add/modify... templateEditor selector ... Wed, 05 Jan 2011 12:43:54 GMT work@… [1334] * trunk/grails-app/views/importer/common/_ajaxflow.gsp (modified) * trunk/grails-app/views/importer/common/_please_wait.gsp (added) - added 'please wait' functionality to importer Wed, 05 Jan 2011 12:31:21 GMT work@… [1333] * trunk/application.properties (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/views/studyWizard/common/_please_wait.gsp (modified) * trunk/web-app/css/ajaxflow.css (modified) * trunk/web-app/images/ajaxflow/ajax-loader.gif (added) * trunk/web-app/images/ajaxflow/spinner-large.gif (deleted) - updating to ajaxflow 0.1.12 - changed 'please wait' behaviour ... Wed, 05 Jan 2011 10:00:01 GMT t.w.abma@… [1332] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - fixed entity URL-decoding when importing the file Wed, 05 Jan 2011 09:55:00 GMT t.w.abma@… [1331] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - fixed entity selection by adding URL-encoding and decoding to the ... Wed, 05 Jan 2011 09:34:01 GMT work@… [1330] * trunk/grails-app/conf/Config.groovy (modified) - temporary fix for jquery 1.4.4 Tue, 04 Jan 2011 12:53:23 GMT work@… [1329] * trunk/application.properties (modified) * trunk/grails-app/views/layouts/dialog.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/layouts/nimble.gsp (modified) * trunk/web-app/css/cupertino/images/ui-bg_glass_100_e4f1fb_1x400.png (modified) * trunk/web-app/css/cupertino/images/ui-bg_glass_50_3baae3_1x400.png (modified) * trunk/web-app/css/cupertino/images/ui-bg_glass_80_d7ebf9_1x400.png (modified) * trunk/web-app/css/cupertino/images/ui-icons_72a7cf_256x240.png (modified) * trunk/web-app/css/cupertino/jquery-ui-1.8.5.custom.css (deleted) * trunk/web-app/css/cupertino/jquery-ui-1.8.7.custom.css (added) * trunk/web-app/js/jquery-ui-1.8.5.custom.min.js (deleted) * trunk/web-app/js/jquery-ui-1.8.7.custom.min.js (added) - upgraded jquery to 1.4.4 - upgraded jquery-ui to 1.8.7 - upgraded ... Tue, 04 Jan 2011 10:13:45 GMT robert@… [1328] * trunk/grails-app/conf/BootStrapStudies.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) Added metagenomics module and improved rest controller to give 404 ... Thu, 30 Dec 2010 09:02:54 GMT business@… [1327] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) made description field text, see [1245] Tue, 28 Dec 2010 08:15:43 GMT t.w.abma@… [1326] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - indendation fix Fri, 24 Dec 2010 11:53:23 GMT robert@… [1325] * trunk/grails-app/views/publication/add.gsp (modified) * trunk/web-app/js/publication-chooser.pubmed.js (modified) Resolved bug in searching publications due to wizard refactoring. See ... Thu, 23 Dec 2010 12:44:16 GMT t.w.abma@… [1324] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - tomcat trigger