# # ChangeLog for trunk/grails-app/domain # # Generated by Trac 1.0.2 # Jan 20, 2021, 12:07:48 PM Mon, 25 Jan 2010 07:45:11 GMT jahn [116] * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:45:00 GMT jahn [115] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:44:20 GMT jahn [114] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:43:05 GMT jahn [113] * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:42:50 GMT jahn [112] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:40:43 GMT jahn [111] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Committed as part of Event editing. Fri, 22 Jan 2010 12:02:40 GMT keesvb [106] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (added) * trunk/grails-app/domain/dbnp/data (added) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (added) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (moved) * trunk/grails-app/domain/dbnp/data/Term.groovy (moved) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp (added) * trunk/grails-app/services/dbnp/clinicaldata (added) * trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (added) * trunk/grails-app/views/clinicalAssay (added) * trunk/grails-app/views/clinicalData (added) * trunk/src/java/dbnp (added) * trunk/src/java/dbnp/data (added) * trunk/src/java/dbnp/data/CleanDataLayer.java (added) * trunk/test/unit/dbnp/clinicaldata (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayInstanceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalDataLayerServiceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalFloatDataTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalStringDataTests.groovy (added) * trunk/test/unit/dbnp/data (added) * trunk/test/unit/dbnp/data/FeatureBaseTests.groovy (added) added first version of clean data layer specification and clinical ... Thu, 21 Jan 2010 12:56:10 GMT duh [103] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/elements (deleted) * trunk/grails-app/views/wizard/pages/_study.gsp (moved) * trunk/web-app/css/jquery-ui/images (deleted) * trunk/web-app/css/jquery-ui/jquery-ui-1.7.2.custom.css (added) - added error handling to the wizard - changed jquery-ui interface ... Wed, 20 Jan 2010 16:01:26 GMT duh [101] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_navigation.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/js/wizard.js (modified) - refactored the wizard initial page to dynamically load pageOne, ... Wed, 20 Jan 2010 13:50:23 GMT keesvb [100] * trunk/application.properties (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) small cosmetic changes, enabled Study list menu link Tue, 19 Jan 2010 14:39:33 GMT ademcan [95] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) list and show for the studies list Tue, 19 Jan 2010 13:25:45 GMT duh [92] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_jquerysetup.gsp (modified) * trunk/grails-app/views/subject (added) * trunk/grails-app/views/template (added) * trunk/grails-app/views/templateSubjectField (added) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/test/unit/dbnp/studycapturing/SubjectControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldControllerTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) - added sample template data in bootstrap - upgraded jQuery - ... Wed, 13 Jan 2010 14:25:28 GMT ademcan [85] * trunk/grails-app/controllers/dbnp (added) * trunk/grails-app/controllers/dbnp/studycapturing (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/language (added) * trunk/grails-app/views/language/create.gsp (added) * trunk/grails-app/views/language/edit.gsp (added) * trunk/grails-app/views/language/list.gsp (added) * trunk/grails-app/views/language/show.gsp (added) * trunk/grails-app/views/study (added) * trunk/grails-app/views/study/create.gsp (added) * trunk/grails-app/views/study/edit.gsp (added) * trunk/grails-app/views/study/list.gsp (added) * trunk/grails-app/views/study/list_backup.gsp (added) * trunk/grails-app/views/study/show.gsp (added) * trunk/src/templates (added) * trunk/src/templates/artifacts (added) * trunk/src/templates/scaffolding (added) * trunk/src/templates/war (added) the templates for the Study class, I have modified the scaffolding view. Wed, 13 Jan 2010 12:55:45 GMT keesvb [84] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateFieldTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldsTests.groovy (added) updated domain classes: added comments, carried out some normalization Mon, 11 Jan 2010 13:44:03 GMT ademcan [83] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/TemplateController.groovy (deleted) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/test/unit/magetab/adf/TermsourceTests.groovy (added) * trunk/test/unit/magetab/idf/ExperimentalInfoTests.groovy (added) modification of some magetab domain classes Mon, 11 Jan 2010 09:37:17 GMT keesvb [82] * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/MAGEAssay.groovy (moved) renamed magetab Assay class to avoid name conflicts Mon, 11 Jan 2010 09:33:01 GMT keesvb [81] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (added) * trunk/test/unit/dbnp/studycapturing/AssayTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventDescriptionTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SampleTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SamplingEventTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) updated domain classes: added event description, sample and assay Thu, 07 Jan 2010 12:38:25 GMT keesvb [80] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (added) * trunk/grails-app/controllers/ProtocolController.groovy (added) * trunk/grails-app/controllers/ProtocolParameterController.groovy (added) * trunk/grails-app/controllers/TermController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/test/unit/OntologyControllerTests.groovy (added) * trunk/test/unit/ProtocolControllerTests.groovy (added) * trunk/test/unit/ProtocolParameterControllerTests.groovy (added) * trunk/test/unit/TermControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolInstanceTests.groovy (added) * trunk/tests (added) * trunk/tests/create_protocol_parameter (added) * trunk/tests/create_template_study (added) added Event and ProtocolInstance classes, updated DataSource to work ... Tue, 05 Jan 2010 16:32:25 GMT robertkerkhoven [79] * trunk/grails-app/domain/dbnp/transcriptomics/data (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (added) Added three domain classes for the storage of micro-array data. - ... Tue, 05 Jan 2010 10:54:42 GMT keesvb [77] * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (added) * trunk/test/unit/dbnp (added) * trunk/test/unit/dbnp/studycapturing (added) * trunk/test/unit/dbnp/studycapturing/GroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolParameterTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectGroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics (added) * trunk/test/unit/dbnp/transcriptomics/magetab (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ArrayDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/CompositeElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/DesignElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/FeatureTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixColumnTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowIdTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ReporterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/CommentTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/FactorTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/InvestigationDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ParameterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PersonTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PublicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/UserDefinedAttributeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/AssayTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DataObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/EdgeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/FactorValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/HybridizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ImageTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/LabeledExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/MaterialTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeListTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NormalizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ParameterValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProtocolApplicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProviderTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationshipTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ScanTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/URIValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/UserDefinedValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ValueTests.groovy (added) sorry, forgot to commit the classes Tue, 05 Jan 2010 10:50:29 GMT duh [75] * trunk/application.properties (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (deleted) - removed Study domain class (kees forgot to submit his domain ... Tue, 05 Jan 2010 10:21:31 GMT ademcan [72] * trunk/application.properties (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (added) * trunk/test/unit/dbnp (added) * trunk/test/unit/dbnp/studycapturing (added) * trunk/test/unit/magetab (added) * trunk/test/unit/magetab/adf (added) * trunk/test/unit/magetab/idf (added) modification of domain classes organization Mon, 04 Jan 2010 11:13:36 GMT keesvb [70] * trunk/application.properties (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/ExperimentController.groovy (deleted) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/PersonController.groovy (deleted) * trunk/grails-app/controllers/ProtocolController.groovy (deleted) * trunk/grails-app/controllers/PublicationController.groovy (deleted) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/domain/Chip.groovy (deleted) * trunk/grails-app/domain/ChipAnnotation.groovy (deleted) * trunk/grails-app/domain/Data.groovy (deleted) * trunk/grails-app/domain/DataType.groovy (deleted) * trunk/grails-app/domain/Experiment.groovy (deleted) * trunk/grails-app/domain/ExperimentSample.groovy (deleted) * trunk/grails-app/domain/Expression.groovy (deleted) * trunk/grails-app/domain/MetaData.groovy (deleted) * trunk/grails-app/domain/MetaField.groovy (deleted) * trunk/grails-app/domain/MetaFieldGroup.groovy (deleted) * trunk/grails-app/domain/MetaFieldOption.groovy (deleted) * trunk/grails-app/domain/MetaFieldType.groovy (deleted) * trunk/grails-app/domain/MetaObject.groovy (deleted) * trunk/grails-app/domain/MetaTemplate.groovy (deleted) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (deleted) * trunk/grails-app/domain/Sample.groovy (deleted) * trunk/grails-app/domain/SampleType.groovy (deleted) * trunk/grails-app/domain/Source.groovy (deleted) * trunk/grails-app/domain/Species.groovy (deleted) * trunk/grails-app/domain/Strain.groovy (deleted) * trunk/grails-app/domain/Study.groovy (deleted) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (deleted) * trunk/grails-app/domain/dbnp (added) * trunk/grails-app/domain/dbnp/studycapturing (added) * trunk/grails-app/domain/dbnp/transcriptomics (added) * trunk/grails-app/domain/dbnp/transcriptomics/magetab (moved) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (moved) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/i18n/messages.properties (modified) * trunk/grails-app/i18n/messages_de.properties (modified) * trunk/grails-app/i18n/messages_nl.properties (modified) * trunk/test/unit/DataControllerTests.groovy (deleted) * trunk/test/unit/DataTypeControllerTests.groovy (deleted) * trunk/test/unit/ExperimentControllerTests.groovy (deleted) * trunk/test/unit/ExperimentSampleControllerTests.groovy (deleted) * trunk/test/unit/MetaDataControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldGroupControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldOptionControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldTypeControllerTests.groovy (deleted) * trunk/test/unit/PersonControllerTests.groovy (deleted) * trunk/test/unit/ProtocolControllerTests.groovy (deleted) * trunk/test/unit/PublicationControllerTests.groovy (deleted) * trunk/test/unit/magetab (deleted) * trunk/web-app/WEB-INF/applicationContext.xml (modified) * trunk/web-app/WEB-INF/sitemesh.xml (modified) * trunk/web-app/WEB-INF/tld/grails.tld (modified) updated to Grails 1.2, restructured packages, added some domain ... Wed, 16 Dec 2009 16:14:45 GMT duh [69] * trunk/grails-app/domain/Chip.groovy (modified) * trunk/grails-app/domain/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/Data.groovy (modified) * trunk/grails-app/domain/DataType.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/ExperimentSample.groovy (modified) * trunk/grails-app/domain/Expression.groovy (modified) * trunk/grails-app/domain/MetaData.groovy (modified) * trunk/grails-app/domain/MetaField.groovy (modified) * trunk/grails-app/domain/MetaFieldGroup.groovy (modified) * trunk/grails-app/domain/MetaFieldOption.groovy (modified) * trunk/grails-app/domain/MetaFieldType.groovy (modified) * trunk/grails-app/domain/MetaObject.groovy (modified) * trunk/grails-app/domain/MetaTemplate.groovy (modified) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (modified) * trunk/grails-app/domain/Sample.groovy (modified) * trunk/grails-app/domain/SampleType.groovy (modified) * trunk/grails-app/domain/Source.groovy (modified) * trunk/grails-app/domain/Species.groovy (modified) * trunk/grails-app/domain/Strain.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (modified) * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Assay.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) - set keyword expansion Wed, 16 Dec 2009 16:13:40 GMT duh [68] * trunk/grails-app/domain/Chip.groovy (modified) * trunk/grails-app/domain/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/Expression.groovy (modified) - changes headers conform standard Tue, 15 Dec 2009 21:24:52 GMT robertkerkhoven [66] * trunk/grails-app/domain/Chip.groovy (added) * trunk/grails-app/domain/ChipAnnotation.groovy (added) * trunk/grails-app/domain/Expression.groovy (added) Added 3 domain classes (groovy) for storing chip annotation and ... Tue, 15 Dec 2009 15:37:11 GMT ademcan [64] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/domain/magetab/idf/Comment.groovy (added) * trunk/grails-app/domain/magetab/idf/ExperimentalInfo.groovy (added) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (modified) * trunk/test/unit/magetab/idf/CommentTests.groovy (added) Loading new magetab data in the database from IDF file. Mon, 14 Dec 2009 09:48:04 GMT ademcan [63] * trunk/grails-app/controllers/LoadController.groovy (added) * trunk/grails-app/controllers/PersonController.groovy (added) * trunk/grails-app/controllers/ProtocolController.groovy (added) * trunk/grails-app/controllers/PublicationController.groovy (added) * trunk/grails-app/domain/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/load (added) * trunk/grails-app/views/load/index.gsp (added) * trunk/grails-app/views/person (added) * trunk/grails-app/views/protocol (added) * trunk/grails-app/views/publication (added) * trunk/test/unit/PersonControllerTests.groovy (added) * trunk/test/unit/ProtocolControllerTests.groovy (added) * trunk/test/unit/PublicationControllerTests.groovy (added) Parsing and Loading information from an IDF file (MageTab). Actually ... Tue, 08 Dec 2009 15:34:40 GMT keesvb [62] * trunk/application.properties (modified) * trunk/grails-app/domain/magetab/sdrf/ExtractObj.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractObjTests.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractObjectTests.groovy (added) additional commit, renamed Extract to ExtractObj Tue, 08 Dec 2009 15:33:01 GMT keesvb [61] * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Extract.groovy (deleted) fixed the bugs: Hibernate had difficulty with a field named 'version' ... Tue, 24 Nov 2009 09:51:05 GMT keesvb [60] * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) changed typo Thu, 19 Nov 2009 09:25:46 GMT ademcan [59] * trunk/grails-app/domain/magetab/adf/Feature.groovy (deleted) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/magetab/adf/TermSource.groovy (deleted) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/TermSource.groovy (deleted) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Sample.groovy (deleted) * trunk/grails-app/domain/magetab/sdrf/Source.groovy (deleted) Added magetab corrected domain classes, works fine with a postgreSQL ... Tue, 17 Nov 2009 10:15:05 GMT ademcan [58] * trunk/grails-app/domain/magetab/adf (added) * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (added) * trunk/grails-app/domain/magetab/adf/CompositeElement.groovy (added) * trunk/grails-app/domain/magetab/adf/DesignElement.groovy (added) * trunk/grails-app/domain/magetab/adf/Feature.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixRowId.groovy (added) * trunk/grails-app/domain/magetab/adf/Reporter.groovy (added) * trunk/grails-app/domain/magetab/adf/TermSource.groovy (added) * trunk/grails-app/domain/magetab/sdrf (added) * trunk/grails-app/domain/magetab/sdrf/ArrayData.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Assay.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DataObject.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayData.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayDataMatrix.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Edge.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Extract.groovy (added) * trunk/grails-app/domain/magetab/sdrf/FactorValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Hybridization.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Image.groovy (added) * trunk/grails-app/domain/magetab/sdrf/LabeledExtract.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Material.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Node.groovy (added) * trunk/grails-app/domain/magetab/sdrf/NodeList.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ParameterValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ProtocolApplication.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Provider.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Sample.groovy (added) * trunk/grails-app/domain/magetab/sdrf/SampleAndDataRelationship.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Scan.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Source.groovy (added) * trunk/grails-app/domain/magetab/sdrf/URIValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/UserDefinedValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Value.groovy (added) * trunk/test/unit/magetab/adf (added) * trunk/test/unit/magetab/adf/ArrayDesignTests.groovy (added) * trunk/test/unit/magetab/adf/CompositeElementTests.groovy (added) * trunk/test/unit/magetab/adf/DesignElementTests.groovy (added) * trunk/test/unit/magetab/adf/FeatureTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixColumnTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixRowIdTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixRowTests.groovy (added) * trunk/test/unit/magetab/adf/ReporterTests.groovy (added) * trunk/test/unit/magetab/adf/TermSourceTests.groovy (added) * trunk/test/unit/magetab/sdrf (added) * trunk/test/unit/magetab/sdrf/ArrayDataMatrixTests.groovy (added) * trunk/test/unit/magetab/sdrf/ArrayDataTests.groovy (added) * trunk/test/unit/magetab/sdrf/AssayTests.groovy (added) * trunk/test/unit/magetab/sdrf/DataObjectTests.groovy (added) * trunk/test/unit/magetab/sdrf/DerivedArrayDataMatrixTests.groovy (added) * trunk/test/unit/magetab/sdrf/DerivedArrayDataTests.groovy (added) * trunk/test/unit/magetab/sdrf/EdgeTests.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractTests.groovy (added) * trunk/test/unit/magetab/sdrf/FactorValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/HybridizationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ImageTests.groovy (added) * trunk/test/unit/magetab/sdrf/LabeledExtractTests.groovy (added) * trunk/test/unit/magetab/sdrf/MaterialTests.groovy (added) * trunk/test/unit/magetab/sdrf/NodeListTests.groovy (added) * trunk/test/unit/magetab/sdrf/NodeTests.groovy (added) * trunk/test/unit/magetab/sdrf/NormalizationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ParameterValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/ProtocolApplicationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ProviderTests.groovy (added) * trunk/test/unit/magetab/sdrf/SampleAndDataRelationshipTests.groovy (added) * trunk/test/unit/magetab/sdrf/SampleTests.groovy (added) * trunk/test/unit/magetab/sdrf/ScanTests.groovy (added) * trunk/test/unit/magetab/sdrf/SourceTests.groovy (added) * trunk/test/unit/magetab/sdrf/URIValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/UserDefinedValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/ValueTests.groovy (added) Adding magetab.adf and magetab.sdrf domain classes Tue, 17 Nov 2009 09:27:32 GMT keesvb [56] * trunk/grails-app/domain/magetab (added) * trunk/grails-app/domain/magetab/idf (added) * trunk/grails-app/domain/magetab/idf/Factor.groovy (added) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (added) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (added) * trunk/grails-app/domain/magetab/idf/Parameter.groovy (added) * trunk/grails-app/domain/magetab/idf/Person.groovy (added) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (added) * trunk/grails-app/domain/magetab/idf/Publication.groovy (added) * trunk/grails-app/domain/magetab/idf/TermSource.groovy (added) * trunk/grails-app/domain/magetab/idf/UserDefinedAttribute.groovy (added) * trunk/test/unit/FakeObjectControllerTests.groovy (added) * trunk/test/unit/magetab (added) * trunk/test/unit/magetab/idf (added) * trunk/test/unit/magetab/idf/FactorTests.groovy (added) * trunk/test/unit/magetab/idf/InvestigationDesignTests.groovy (added) * trunk/test/unit/magetab/idf/OntologyTermTests.groovy (added) * trunk/test/unit/magetab/idf/ParameterTests.groovy (added) * trunk/test/unit/magetab/idf/ProtocolTests.groovy (added) Added MAGE-TAB IDF data domain model Wed, 11 Nov 2009 13:50:01 GMT duh [55] * trunk/grails-app/domain/nimble/NimbleProfile.groovy (deleted) * trunk/grails-app/domain/nimble/NimbleUser.groovy (deleted) - removed to obsolete / duplicate nimble domain classes Fri, 06 Nov 2009 12:45:41 GMT duh [51] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (added) * trunk/grails-app/conf/NimbleConfig.groovy (added) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (added) * trunk/grails-app/conf/NimbleUrlMappings.groovy (added) * trunk/grails-app/domain/nimble (added) * trunk/grails-app/domain/nimble/NimbleProfile.groovy (added) * trunk/grails-app/domain/nimble/NimbleUser.groovy (added) * trunk/grails-app/domain/nimble/Profile.groovy (added) * trunk/grails-app/domain/nimble/User.groovy (added) * trunk/grails-app/views/templates/nimble (added) * trunk/grails-app/views/templates/nimble/help (added) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (added) * trunk/grails-app/views/templates/nimble/login (added) * trunk/grails-app/views/templates/nimble/login/_login.gsp (added) * trunk/grails-app/views/templates/nimble/mail (added) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (added) * trunk/grails-app/views/templates/nimble/navigation (added) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (added) * trunk/grails-app/views/templates/nimble/profile (added) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (added) -re-added nimble snapshot 0.3 Fri, 06 Nov 2009 12:24:35 GMT duh [50] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (deleted) * trunk/grails-app/conf/NimbleConfig.groovy (deleted) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (deleted) * trunk/grails-app/conf/NimbleUrlMappings.groovy (deleted) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/nimble (deleted) * trunk/grails-app/views/templates/nimble (deleted) -removed nimble (to reimplement it in the next commit) Thu, 05 Nov 2009 12:46:04 GMT duh [47] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (deleted) * trunk/grails-app/conf/NimbleConfig.groovy (deleted) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (deleted) * trunk/grails-app/conf/NimbleUrlMappings.groovy (deleted) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/gscf (deleted) * trunk/grails-app/domain/nimble (added) * trunk/grails-app/domain/nimble/profile.groovy (added) * trunk/grails-app/domain/nimble/user.groovy (added) * trunk/grails-app/views/authAction (deleted) * trunk/grails-app/views/authGroup (deleted) * trunk/grails-app/views/authRole (deleted) * trunk/grails-app/views/authUser (deleted) * trunk/grails-app/views/templates/nimble (deleted) * trunk/test/unit/AuthActionControllerTests.groovy (deleted) * trunk/test/unit/AuthActionTests.groovy (deleted) * trunk/test/unit/AuthGroupControllerTests.groovy (deleted) * trunk/test/unit/AuthGroupTests.groovy (deleted) * trunk/test/unit/AuthRoleControllerTests.groovy (deleted) * trunk/test/unit/AuthRoleTests.groovy (deleted) * trunk/test/unit/AuthUserControllerTests.groovy (deleted) * trunk/test/unit/AuthUserTests.groovy (deleted) - refactored nimble from the external intient repository to the ... Thu, 29 Oct 2009 16:46:11 GMT keesvb [40] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/controllers/ExperimentController.groovy (added) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/study (deleted) * trunk/lib/mysql-connector-java-5.1.8-bin.jar (added) changed study and experiment schema, added mysql production database Thu, 29 Oct 2009 13:01:32 GMT duh [37] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (added) * trunk/grails-app/conf/NimbleConfig.groovy (added) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (added) * trunk/grails-app/conf/NimbleUrlMappings.groovy (added) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/domain/gscf (added) * trunk/grails-app/domain/gscf/Profile.groovy (added) * trunk/grails-app/domain/gscf/User.groovy (added) * trunk/grails-app/i18n/shiro.properties (added) * trunk/grails-app/realms (added) * trunk/grails-app/views/common/_login_panel.gsp (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/templates (added) * trunk/grails-app/views/templates/nimble (added) * trunk/grails-app/views/templates/nimble/help (added) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (added) * trunk/grails-app/views/templates/nimble/login (added) * trunk/grails-app/views/templates/nimble/login/_login.gsp (added) * trunk/grails-app/views/templates/nimble/mail (added) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (added) * trunk/grails-app/views/templates/nimble/navigation (added) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (added) * trunk/grails-app/views/templates/nimble/profile (added) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (added) * trunk/src/sass (added) * trunk/src/sass/_rounded.sass (added) * trunk/src/sass/_uielements.sass (added) - installed and implemented nimble plugin - setup basic nimble ... Wed, 28 Oct 2009 15:08:08 GMT keesvb [35] * trunk/grails-app/controllers/StudyController.groovy (added) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/query (added) * trunk/grails-app/views/study (added) * trunk/grails-app/views/study/create.gsp (added) * trunk/grails-app/views/study/edit.gsp (added) * trunk/grails-app/views/study/list.gsp (added) * trunk/grails-app/views/study/show.gsp (added) * trunk/web-app/css/jquery-ui (added) * trunk/web-app/css/jquery-ui/images (added) * trunk/web-app/css/jquery-ui/images/ui-bg_diagonal-maze_20_6e4f1c_10x10.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_diagonal-maze_40_000000_10x10.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_10_eceadf_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_10_f8f7f6_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_eceadf_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_f7f3de_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_ffffff_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_65_654b24_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_68_b83400_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_222222_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_3572ac_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_8c291d_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_b83400_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_fbdb93_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_ffffff_256x240.png (added) * trunk/web-app/css/jquery-ui/jquery-ui-1.7.2.custom.css (added) * trunk/web-app/js/jquery-ui-1.7.2.custom.min.js (added) added jquery-ui manually (install-jquery-plugin seems broken) and ... Tue, 27 Oct 2009 12:32:34 GMT duh [34] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (added) * trunk/grails-app/controllers/AuthActionController.groovy (deleted) * trunk/grails-app/controllers/AuthGroupController.groovy (deleted) * trunk/grails-app/controllers/AuthRoleController.groovy (deleted) * trunk/grails-app/controllers/AuthUserController.groovy (deleted) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/domain/AuthAction.groovy (deleted) * trunk/grails-app/domain/AuthGroup.groovy (deleted) * trunk/grails-app/domain/AuthRole.groovy (deleted) * trunk/grails-app/domain/AuthUser.groovy (deleted) * trunk/grails-app/domain/Study.groovy.prej (deleted) * trunk/grails-app/services/AuthorizationService.groovy (deleted) -removed testing authorization code -looking at 'apache shiro' and / ... Mon, 26 Oct 2009 14:17:02 GMT gajula [31] * trunk/grails-app/domain/Data.groovy (modified) * trunk/grails-app/domain/DataType.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/ExperimentSample.groovy (modified) * trunk/grails-app/domain/MetaData.groovy (modified) * trunk/grails-app/domain/MetaField.groovy (modified) * trunk/grails-app/domain/MetaFieldGroup.groovy (modified) * trunk/grails-app/domain/MetaFieldOption.groovy (modified) * trunk/grails-app/domain/MetaFieldType.groovy (modified) * trunk/grails-app/domain/MetaObject.groovy (modified) * trunk/grails-app/domain/MetaTemplate.groovy (modified) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (modified) * trunk/grails-app/domain/Sample.groovy (modified) * trunk/grails-app/domain/SampleType.groovy (modified) * trunk/grails-app/domain/Source.groovy (modified) * trunk/grails-app/domain/Strain.groovy (modified) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (modified) Added Keyword Expansion *.groovy Mon, 26 Oct 2009 14:05:34 GMT gajula [30] * trunk/grails-app/domain/Species.groovy (modified) Check Keyword Expansion Species.groovy Thu, 22 Oct 2009 07:15:48 GMT gajula [18] * trunk/grails-app/domain/Study.groovy (modified) Domain classes Thu, 22 Oct 2009 07:12:59 GMT gajula [17] * trunk/grails-app/domain/Data.groovy (added) * trunk/grails-app/domain/DataType.groovy (added) * trunk/grails-app/domain/Experiment.groovy (added) * trunk/grails-app/domain/ExperimentSample.groovy (added) * trunk/grails-app/domain/MetaData.groovy (added) * trunk/grails-app/domain/MetaField.groovy (added) * trunk/grails-app/domain/MetaFieldGroup.groovy (added) * trunk/grails-app/domain/MetaFieldOption.groovy (added) * trunk/grails-app/domain/MetaFieldType.groovy (added) * trunk/grails-app/domain/MetaObject.groovy (added) * trunk/grails-app/domain/MetaTemplate.groovy (added) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (added) * trunk/grails-app/domain/Sample.groovy (added) * trunk/grails-app/domain/SampleType.groovy (added) * trunk/grails-app/domain/Source.groovy (added) * trunk/grails-app/domain/Species.groovy (added) * trunk/grails-app/domain/Strain.groovy (added) * trunk/grails-app/domain/Study.groovy.prej (added) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (added) Domain classes Wed, 21 Oct 2009 11:07:28 GMT duh [16] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/controllers/AuthActionController.groovy (modified) * trunk/grails-app/controllers/AuthGroupController.groovy (modified) * trunk/grails-app/controllers/AuthRoleController.groovy (modified) * trunk/grails-app/controllers/AuthUserController.groovy (modified) * trunk/grails-app/domain/AuthAction.groovy (modified) * trunk/grails-app/domain/AuthGroup.groovy (modified) * trunk/grails-app/domain/AuthRole.groovy (modified) * trunk/grails-app/domain/AuthUser.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) -set keyword expansion Wed, 21 Oct 2009 11:04:41 GMT duh [15] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/AuthActionController.groovy (added) * trunk/grails-app/controllers/AuthGroupController.groovy (added) * trunk/grails-app/controllers/AuthRoleController.groovy (added) * trunk/grails-app/controllers/AuthUserController.groovy (added) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/ErrorController.groovy (modified) * trunk/grails-app/controllers/TestController.groovy (modified) * trunk/grails-app/domain/AuthAction.groovy (added) * trunk/grails-app/domain/AuthGroup.groovy (added) * trunk/grails-app/domain/AuthRole.groovy (added) * trunk/grails-app/domain/AuthUser.groovy (added) * trunk/grails-app/services/AuthorizationService.groovy (moved) * trunk/grails-app/services/Debug.groovy (deleted) * trunk/grails-app/views/authAction (added) * trunk/grails-app/views/authGroup (added) * trunk/grails-app/views/authRole (added) * trunk/grails-app/views/authUser (added) * trunk/test/unit/AuthActionControllerTests.groovy (added) * trunk/test/unit/AuthActionTests.groovy (added) * trunk/test/unit/AuthGroupControllerTests.groovy (added) * trunk/test/unit/AuthGroupTests.groovy (added) * trunk/test/unit/AuthRoleControllerTests.groovy (added) * trunk/test/unit/AuthRoleTests.groovy (added) * trunk/test/unit/AuthUserControllerTests.groovy (added) * trunk/test/unit/AuthUserTests.groovy (added) * trunk/web-app (modified) * trunk/web-app/js (modified) -added initial implementation of authorization code Mon, 19 Oct 2009 14:13:33 GMT duh [14] * trunk/grails-app/controllers/ErrorController.groovy (modified) * trunk/grails-app/controllers/TestController.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/services/Authorization.groovy (modified) * trunk/grails-app/services/Debug.groovy (modified) added keyword expansion Mon, 19 Oct 2009 12:33:49 GMT gajula [10] * trunk/grails-app/domain/Study.groovy (added) * trunk/test/unit/StudyTests.groovy (added) Added Keyword expansion Wed, 14 Oct 2009 10:06:53 GMT duh [4] * trunk/application.properties (added) * trunk/build.xml (added) * trunk/grails-app (added) * trunk/grails-app/conf (added) * trunk/grails-app/conf/BootStrap.groovy (added) * trunk/grails-app/conf/Config.groovy (added) * trunk/grails-app/conf/DataSource.groovy (added) * trunk/grails-app/conf/UrlMappings.groovy (added) * trunk/grails-app/conf/hibernate (added) * trunk/grails-app/conf/spring (added) * trunk/grails-app/conf/spring/resources.groovy (added) * trunk/grails-app/controllers (added) * trunk/grails-app/domain (added) * trunk/grails-app/i18n (added) * trunk/grails-app/i18n/messages.properties (added) * trunk/grails-app/i18n/messages_de.properties (added) * trunk/grails-app/i18n/messages_es.properties (added) * trunk/grails-app/i18n/messages_fr.properties (added) * trunk/grails-app/i18n/messages_it.properties (added) * trunk/grails-app/i18n/messages_ja.properties (added) * trunk/grails-app/i18n/messages_nl.properties (added) * trunk/grails-app/i18n/messages_pt_BR.properties (added) * trunk/grails-app/i18n/messages_ru.properties (added) * trunk/grails-app/i18n/messages_th.properties (added) * trunk/grails-app/i18n/messages_zh_CN.properties (added) * trunk/grails-app/services (added) * trunk/grails-app/taglib (added) * trunk/grails-app/utils (added) * trunk/grails-app/views (added) * trunk/grails-app/views/error.gsp (added) * trunk/grails-app/views/index.gsp (added) * trunk/grails-app/views/layouts (added) * trunk/grails-app/views/layouts/main.gsp (added) * trunk/gscf-test.launch (added) * trunk/gscf.launch (added) * trunk/gscf.tmproj (added) * trunk/ivy.xml (added) * trunk/ivysettings.xml (added) * trunk/lib (added) * trunk/scripts (added) * trunk/src (added) * trunk/src/groovy (added) * trunk/src/java (added) * trunk/stacktrace.log (added) * trunk/test (added) * trunk/test/integration (added) * trunk/test/unit (added) * trunk/web-app (added) * trunk/web-app/META-INF (added) * trunk/web-app/WEB-INF (added) * trunk/web-app/WEB-INF/applicationContext.xml (added) * trunk/web-app/WEB-INF/sitemesh.xml (added) * trunk/web-app/WEB-INF/tld (added) * trunk/web-app/WEB-INF/tld/c.tld (added) * trunk/web-app/WEB-INF/tld/fmt.tld (added) * trunk/web-app/WEB-INF/tld/grails.tld (added) * trunk/web-app/WEB-INF/tld/spring.tld (added) * trunk/web-app/css (added) * trunk/web-app/css/main.css (added) * trunk/web-app/images (added) * trunk/web-app/images/favicon.ico (added) * trunk/web-app/images/grails_logo.jpg (added) * trunk/web-app/images/skin (added) * trunk/web-app/images/skin/database_add.png (added) * trunk/web-app/images/skin/database_delete.png (added) * trunk/web-app/images/skin/database_edit.png (added) * trunk/web-app/images/skin/database_save.png (added) * trunk/web-app/images/skin/database_table.png (added) * trunk/web-app/images/skin/exclamation.png (added) * trunk/web-app/images/skin/house.png (added) * trunk/web-app/images/skin/information.png (added) * trunk/web-app/images/skin/shadow.jpg (added) * trunk/web-app/images/skin/sorted_asc.gif (added) * trunk/web-app/images/skin/sorted_desc.gif (added) * trunk/web-app/images/spinner.gif (added) * trunk/web-app/js (added) * trunk/web-app/js/application.js (added) * trunk/web-app/js/prototype (added) * trunk/web-app/js/prototype/animation.js (added) * trunk/web-app/js/prototype/builder.js (added) * trunk/web-app/js/prototype/controls.js (added) * trunk/web-app/js/prototype/dragdrop.js (added) * trunk/web-app/js/prototype/effects.js (added) * trunk/web-app/js/prototype/prototype.js (added) * trunk/web-app/js/prototype/rico.js (added) * trunk/web-app/js/prototype/scriptaculous.js (added) * trunk/web-app/js/prototype/slider.js (added) * trunk/web-app/js/prototype/sound.js (added) * trunk/web-app/js/prototype/unittest.js (added) Initial check-in of a fresh grails application