# # ChangeLog for / # # Generated by Trac 1.0.2 # Jan 20, 2021, 6:54:10 PM Thu, 17 Mar 2011 16:42:00 GMT work@… [1643] * trunk/INSTALLATION (modified) * trunk/NOTICE (modified) updated gscf instructions Thu, 17 Mar 2011 14:58:41 GMT work@… [1642] * trunk/application.properties (modified) - templateEditor now scrolls down and focusses on the name field when ... Thu, 17 Mar 2011 14:18:15 GMT work@… [1641] * trunk/application.properties (modified) - gdt up to 0.0.26 (varchar 255 bugfix) Thu, 17 Mar 2011 14:16:24 GMT work@… [1640] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/views/studyWizard/pages/_done.gsp (modified) - added simple study support (study page) Thu, 17 Mar 2011 11:02:05 GMT work@… [1639] * trunk/application.properties (modified) - changed 0.6.6.1 into 0.6.7 as the deploy script does not expect a 4 ... Wed, 16 Mar 2011 17:03:06 GMT work@… [1638] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) - resolves #364 Wed, 16 Mar 2011 10:37:08 GMT work@… [1637] * trunk/application.properties (modified) - up to 0.6.6.1 (see #359) Tue, 15 Mar 2011 15:42:01 GMT work@… [1636] * trunk/application.properties (modified) - gdt to 0.0.25: - template editor blue screen is fixed - 0 ... Tue, 15 Mar 2011 13:06:25 GMT work@… [1635] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) - added checks to Grom calls if Grom is available so we can uninstall ... Tue, 15 Mar 2011 11:10:43 GMT work@… [1634] * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) - event templates were not refreshed properly after update (ticket to ... Mon, 14 Mar 2011 15:36:39 GMT s.h.sikkema@… [1633] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) Fixed 'Assay has no value (null)' error in assay exporter Mon, 14 Mar 2011 14:49:07 GMT s.h.sikkema@… [1632] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) Fixed 'Assay has no value (null)' error in assay exporter Mon, 14 Mar 2011 13:55:21 GMT s.h.sikkema@… [1631] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) Fixed 'Assay has no value (null)' error in assay exporter Fri, 11 Mar 2011 14:33:45 GMT work@… [1630] * trunk/grails-app/conf/config-dbnpdemo.properties (modified) * trunk/grails-app/conf/config-dbnptest.properties (modified) - disabled gmail for dbnp servers Fri, 11 Mar 2011 14:25:22 GMT work@… [1629] * tags/0.6.6 (copied) tagging 0.6.6 release Fri, 11 Mar 2011 14:06:04 GMT work@… [1628] * trunk/application.properties (modified) * trunk/grails-app/controllers/dbnp/setup (deleted) * trunk/grails-app/views/setup (deleted) - removed obosolete setup wizard - 0.6.6 milestone Fri, 11 Mar 2011 13:14:29 GMT work@… [1627] * trunk/grails-app/conf/BaseFilters.groovy (modified) - deny all access to /query except in development Fri, 11 Mar 2011 12:42:05 GMT work@… [1626] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LoginController.groovy (modified) - added initial support of a return URI; not working properly though... Fri, 11 Mar 2011 11:55:57 GMT work@… [1625] * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/views/home/index.gsp (modified) - improved quicksearch Fri, 11 Mar 2011 11:43:38 GMT work@… [1624] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) - reverted addition of unique() in 1621 as this doubles with the ... Fri, 11 Mar 2011 11:40:10 GMT work@… [1623] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) - resolves #354 Fri, 11 Mar 2011 10:51:01 GMT robert@… [1622] * trunk/grails-app/views/simpleWizard/simpleWizard/overview.gsp (modified) Small fix in simple wizard overview Fri, 11 Mar 2011 10:02:30 GMT robert@… [1621] * trunk/grails-app/controllers/SandboxController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) Fixed some bugs in simple wizard and study view page Thu, 10 Mar 2011 15:06:02 GMT work@… [1620] * trunk/application.properties (modified) - gdt to 0.0.23 Thu, 10 Mar 2011 14:53:33 GMT work@… [1619] * trunk/grails-app/views/home/index.gsp (modified) spinner Thu, 10 Mar 2011 12:34:15 GMT robert@… [1618] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) Solved issue #351 Thu, 10 Mar 2011 12:06:54 GMT robert@… [1617] * trunk/grails-app/controllers/dbnp/exporter/ExporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/views/exporter/index.gsp (modified) Bugfix in advanced query Thu, 10 Mar 2011 11:29:12 GMT work@… [1616] * trunk/grails-app/conf/DataSource.groovy (modified) - commiting a hibernate performance tweak, all still seems to work? Thu, 10 Mar 2011 10:33:08 GMT work@… [1615] * trunk/application.properties (modified) * trunk/grails-app/conf/BaseFilters.groovy (modified) - fixed cloning of templates (gscf issue #345) Thu, 10 Mar 2011 10:02:53 GMT work@… [1614] * trunk/grails-app/controllers/dbnp/authentication/LoginController.groovy (modified) - fixed indentation Thu, 10 Mar 2011 08:55:36 GMT robert@… [1613] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) Removed some printlns Thu, 10 Mar 2011 08:54:52 GMT robert@… [1612] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) Update simple wizard to import subject without a name correctly and ... Wed, 09 Mar 2011 21:24:41 GMT robert@… [1611] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/finish.gsp (modified) Improved simple study wizard Wed, 09 Mar 2011 20:28:13 GMT robert@… [1610] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/samples.gsp (modified) Improved simple import wizard to be able to import events Wed, 09 Mar 2011 16:28:45 GMT robert@… [1609] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/simpleWizard/samples.gsp (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) Improved simple editing wizard Wed, 09 Mar 2011 14:56:26 GMT robert@… [1608] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleController.groovy (deleted) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/SimpleService.groovy (deleted) * trunk/grails-app/views/simpleWizard/assays.gsp (deleted) * trunk/grails-app/views/simpleWizard/columns.gsp (deleted) * trunk/grails-app/views/simpleWizard/complexStudy.gsp (deleted) * trunk/grails-app/views/simpleWizard/existingSamples.gsp (deleted) * trunk/grails-app/views/simpleWizard/missingFields.gsp (deleted) * trunk/grails-app/views/simpleWizard/overview.gsp (deleted) * trunk/grails-app/views/simpleWizard/samples.gsp (deleted) * trunk/grails-app/views/simpleWizard/save.gsp (deleted) * trunk/grails-app/views/simpleWizard/simpleWizard (added) * trunk/grails-app/views/simpleWizard/simpleWizard/assays.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/columns.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/complexStudy.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/existingSamples.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/finish.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/missingFields.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/overview.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/samples.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/save.gsp (added) * trunk/grails-app/views/simpleWizard/simpleWizard/study.gsp (added) * trunk/grails-app/views/simpleWizard/study.gsp (deleted) Fixed bug with hibernate and transactional services in the simple wizard Wed, 09 Mar 2011 09:17:30 GMT work@… [1607] * trunk/application.properties (modified) - gdt to 0.0.21, fixed a js issue in the term editor Tue, 08 Mar 2011 18:04:01 GMT s.h.sikkema@… [1606] * trunk/grails-app/services/dbnp/studycapturing/SimpleService.groovy (modified) added import ... Tue, 08 Mar 2011 17:04:12 GMT s.h.sikkema@… [1605] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/SimpleService.groovy (added) commit for Robert: see if webflow works when all logic is moved to ... Tue, 08 Mar 2011 17:01:16 GMT s.h.sikkema@… [1604] * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) Added two flushes so that gscf starts correctly on an empty ... Tue, 08 Mar 2011 16:10:09 GMT work@… [1603] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) - importer wizard for studies is instantiating a study from the ... Tue, 08 Mar 2011 15:08:59 GMT work@… [1602] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - improved database upgrade script Tue, 08 Mar 2011 15:02:10 GMT robert@… [1601] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleController.groovy (added) * trunk/web-app/js/simpleWizard.js (modified) Tue, 08 Mar 2011 13:16:05 GMT work@… [1600] * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) added some debugging lines Tue, 08 Mar 2011 13:06:41 GMT work@… [1599] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) to e or not to e Tue, 08 Mar 2011 13:00:24 GMT work@… [1598] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) and false! Tue, 08 Mar 2011 12:59:28 GMT work@… [1597] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) uncommented try/catch block Tue, 08 Mar 2011 10:20:31 GMT robert@… [1596] * trunk/grails-app/controllers/dbnp/query/AdvancedQueryController.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) Solved #344 - retrieving module data is now done using POST Mon, 07 Mar 2011 17:31:52 GMT work@… [1595] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - some database upgrade scripts were always being executed, ... Mon, 07 Mar 2011 14:28:25 GMT robert@… [1594] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/controllers/nmc/PilotController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/assay/create.gsp (modified) * trunk/grails-app/views/assay/edit.gsp (modified) * trunk/grails-app/views/assay/list.gsp (modified) * trunk/grails-app/views/assay/show.gsp (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) Finishing touch after refactoring entity tokens (#329) Mon, 07 Mar 2011 14:02:17 GMT s.h.sikkema@… [1593] * trunk/grails-app/controllers/RestController.groovy (modified) de-commented: def beforeInterceptor = ... Mon, 07 Mar 2011 13:23:37 GMT work@… [1592] * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) - fb only on prod Mon, 07 Mar 2011 11:01:52 GMT robert@… [1591] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/views/simpleWizard/assays.gsp (modified) * trunk/grails-app/views/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/complexStudy.gsp (added) * trunk/grails-app/views/simpleWizard/existingSamples.gsp (added) * trunk/grails-app/views/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/overview.gsp (modified) * trunk/grails-app/views/simpleWizard/samples.gsp (modified) * trunk/grails-app/views/simpleWizard/save.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_samples.gsp (modified) Improved simple wizard so that is can edit studies Fri, 04 Mar 2011 15:28:45 GMT work@… [1590] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/src/groovy/dbnp/query/Search.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (modified) * trunk/test/webtest/gscf/EditStudyWebTests.groovy (modified) - fixing remaining test issues Fri, 04 Mar 2011 11:34:04 GMT s.h.sikkema@… [1589] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) Deleted 'cd..' which somehow got in there Fri, 04 Mar 2011 11:30:52 GMT s.h.sikkema@… [1588] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LoginController.groovy (modified) * trunk/grails-app/controllers/dbnp/authentication/LogoutController.groovy (modified) * trunk/grails-app/controllers/dbnp/exporter/ExporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleNotificationService.groovy (modified) * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/src/templates/artifacts/Service.groovy (modified) * trunk/test/integration/RestControllerIntegrationTests.groovy (modified) * trunk/test/integration/dbnp/query/SampleSearchTests.groovy (modified) * trunk/test/integration/dbnp/studycapturing (deleted) * trunk/test/integration/gscf/EventGroupTests.groovy (modified) * trunk/test/integration/gscf/ImporterTests.groovy (modified) * trunk/test/integration/gscf/SampleTests.groovy (modified) * trunk/test/integration/gscf/StudyTests.groovy (modified) * trunk/test/unit/RestControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (modified) Fixed tests (except webtests); cleaned up ... Fri, 04 Mar 2011 11:14:10 GMT s.h.sikkema@… [1587] * trunk/grails-app/conf/application.properties (deleted) Fri, 04 Mar 2011 09:08:04 GMT work@… [1586] * trunk/grails-app/views/home/index.gsp (modified) minor css change Thu, 03 Mar 2011 19:24:14 GMT work@… [1585] * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) moved text search method into Study domain Thu, 03 Mar 2011 19:02:44 GMT work@… [1584] * trunk/application.properties (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/dbnp/query/SimpleQueryController.groovy (modified) * trunk/grails-app/domain/dbnp/authentication/SecUser.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/home/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/web-app/js/highcharts.js (added) - did some more restyling of the home page (ticket #339) - ... Wed, 02 Mar 2011 16:40:25 GMT s.h.sikkema@… [1583] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayExporterTagLib.groovy (added) * trunk/grails-app/views/assay/compileExportData.gsp (modified) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (modified) UI improvements to assay exporter (ticket #159) Wed, 02 Mar 2011 16:38:59 GMT work@… [1582] * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (deleted) removed the AssayTagLib by request of Siemen Wed, 02 Mar 2011 09:40:40 GMT work@… [1581] * trunk/grails-app/conf/dbnp/configuration/BootStrapAuthentication.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/i18n/messages-nimble.properties (modified) * trunk/grails-app/i18n/messages-nimble_de.properties (modified) * trunk/grails-app/i18n/messages-nimble_pt.properties (modified) * trunk/grails-app/i18n/messages.properties (modified) * trunk/grails-app/i18n/messages.spring-security-ui.properties (modified) * trunk/grails-app/i18n/messages_de.properties (modified) * trunk/grails-app/i18n/messages_es.properties (modified) * trunk/grails-app/i18n/messages_fr.properties (modified) * trunk/grails-app/i18n/messages_it.properties (modified) * trunk/grails-app/i18n/messages_ja.properties (modified) * trunk/grails-app/i18n/messages_nl.properties (modified) * trunk/grails-app/i18n/messages_pt_BR.properties (modified) * trunk/grails-app/i18n/messages_ru.properties (modified) * trunk/grails-app/i18n/messages_th.properties (modified) * trunk/grails-app/i18n/messages_zh_CN.properties (modified) * trunk/grails-app/i18n/shiro.properties (modified) * trunk/grails-app/services/dbnp/modules/ModuleNotificationService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/SimpleWizardTagLib.groovy (modified) * trunk/grails-app/views/advancedQuery/_criteria.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultbuttons.gsp (modified) * trunk/grails-app/views/advancedQuery/_resultsform.gsp (modified) * trunk/grails-app/views/advancedQuery/assayresults.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/assay/compileExportData.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (modified) * trunk/grails-app/views/simpleWizard/_javascripts.gsp (modified) * trunk/grails-app/views/simpleWizard/assays.gsp (modified) * trunk/grails-app/views/simpleWizard/columns.gsp (modified) * trunk/grails-app/views/simpleWizard/missingFields.gsp (modified) * trunk/grails-app/views/simpleWizard/overview.gsp (modified) * trunk/grails-app/views/simpleWizard/samples.gsp (modified) * trunk/grails-app/views/simpleWizard/save.gsp (modified) * trunk/grails-app/views/simpleWizard/study.gsp (modified) set keyword expansion Wed, 02 Mar 2011 09:38:42 GMT work@… [1580] * trunk/src/templates/artifacts/Controller.groovy (modified) * trunk/src/templates/artifacts/DomainClass.groovy (modified) * trunk/src/templates/artifacts/Filters.groovy (modified) * trunk/src/templates/artifacts/Script.groovy (modified) * trunk/src/templates/artifacts/Service.groovy (modified) * trunk/src/templates/artifacts/TagLib.groovy (modified) * trunk/src/templates/artifacts/Tests.groovy (modified) * trunk/src/templates/artifacts/WebTest.groovy (modified) removed keyword expansion for artifact templates Tue, 01 Mar 2011 10:25:37 GMT robert@… [1579] * trunk/grails-app/controllers/RestController.groovy (modified) Using params.moduleURL instead of params.consumer for checking the ... Mon, 28 Feb 2011 17:47:26 GMT work@… [1578] * trunk/grails-app/views/common/_info.gsp (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/images/default_style/body_bg_155px.gif (moved) * trunk/web-app/images/default_style/body_bg_95px.gif (added) * trunk/web-app/images/default_style/header_120px.png (moved) * trunk/web-app/images/default_style/header_60px.png (added) - made a smaller header (60px instead of 120px) Mon, 28 Feb 2011 17:04:45 GMT robert@… [1577] * trunk/grails-app/services/dbnp/authentication/AuthenticationService.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) Resolved problems with module communication Mon, 28 Feb 2011 16:44:13 GMT robert@… [1576] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (modified) * trunk/grails-app/services/dbnp/modules/ModuleCommunicationService.groovy (modified) - Solved locking problems with module communication - Fixed a null ... Mon, 28 Feb 2011 16:25:10 GMT work@… [1575] * trunk/web-app/css/default_style.css (modified) * trunk/web-app/js/topnav.js (modified) - resolves #339 menu issues Mon, 28 Feb 2011 11:13:55 GMT work@… [1574] * trunk/grails-app/conf/DatabaseUpgrade.groovy (modified) - updated mapping name column constraint database upgrade function to ... Mon, 28 Feb 2011 11:07:37 GMT robert@… [1573] * trunk/grails-app/views/study/show_assays.gsp (modified) Check for null values in study.assays list Mon, 28 Feb 2011 10:48:38 GMT work@… [1572] * trunk/application.properties (modified) - gdt updated to 0.0.18 Fri, 25 Feb 2011 16:28:46 GMT robert@… [1571] * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) Another small bugfix Fri, 25 Feb 2011 16:18:49 GMT robert@… [1570] * trunk/grails-app/conf/BaseFilters.groovy (modified) * trunk/grails-app/controllers/RestController.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/PublicationController.groovy (modified) * trunk/grails-app/views/study/show_assays.gsp (modified) Small bugfixes of bugs that appeared during deployment of ... Fri, 25 Feb 2011 16:07:50 GMT work@… [1569] * trunk/application.properties (modified) - apdated grails to 1.3.7 Fri, 25 Feb 2011 15:55:05 GMT j.saito@… [1568] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Added support for matching tempaltes that are present in system. In ... Fri, 25 Feb 2011 14:52:20 GMT work@… [1567] * tags/0.6.5/grails-app/views/studyWizard/pages/_assays.gsp (modified) - added fix #333 to the tag as well Fri, 25 Feb 2011 14:06:47 GMT work@… [1566] * trunk/grails-app/views/studyWizard/pages/_assays.gsp (modified) - resolved #333 Fri, 25 Feb 2011 13:27:48 GMT robert@… [1565] * trunk/grails-app/controllers/dbnp/studycapturing/PublicationController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/simpleWizard/study.gsp (modified) * trunk/web-app/css/simplewizard.css (modified) * trunk/web-app/css/templates.css (modified) Fixed #260 (study wizard in safari) and fixed a bug when adding a ... Fri, 25 Feb 2011 11:18:15 GMT work@… [1564] * tags/0.6.5 (copied) tagging the 0.6.5 release of gscf Fri, 25 Feb 2011 11:16:35 GMT work@… [1563] * trunk/application.properties (modified) - updated version to 0.6.5, tagging release as well Fri, 25 Feb 2011 10:16:09 GMT t.w.abma@… [1562] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) - added extra check in mapping step for date fields, someone entering ... Fri, 25 Feb 2011 09:33:49 GMT s.h.sikkema@… [1561] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Removed some imports and a reference to dbnp.studycapturing.Book to ... Thu, 24 Feb 2011 22:59:08 GMT j.saito@… [1560] * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) Added import methods for XML import of studies. Still not workig ... Thu, 24 Feb 2011 16:14:08 GMT s.h.sikkema@… [1559] * trunk/grails-app/controllers/dbnp/studycapturing/AssayController.groovy (modified) * trunk/grails-app/services/dbnp/studycapturing/AssayService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/AssayTagLib.groovy (added) * trunk/grails-app/views/assay/compileExportData.gsp (added) * trunk/grails-app/views/assay/selectAssay.gsp (modified) * trunk/grails-app/views/assay/selectFields.gsp (added) * trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) Assay export functionality Thu, 24 Feb 2011 15:07:54 GMT work@… [1558] * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) resolves #315 Thu, 24 Feb 2011 14:06:17 GMT work@… [1557] * trunk/application.properties (modified) -gdt to 0.0.17 Thu, 24 Feb 2011 12:38:17 GMT t.w.abma@… [1556] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - wizard error showing up too early removed, now only showing after ... Thu, 24 Feb 2011 10:15:00 GMT t.w.abma@… [1555] * trunk/grails-app/controllers/dbnp/importer/ImporterController.groovy (modified) * trunk/grails-app/views/importer/common/_on_page.gsp (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - disabled key to prevent submission of form (JS) - using ... Wed, 23 Feb 2011 16:09:52 GMT work@… [1554] * trunk/grails-app/views/common/_info.gsp (modified) uptime -> build age Wed, 23 Feb 2011 15:32:09 GMT robert@… [1553] * trunk/grails-app/controllers/dbnp/studycapturing/SimpleWizardController.groovy (added) * trunk/grails-app/services/dbnp/importer/ImporterService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/SimpleWizardTagLib.groovy (added) * trunk/grails-app/views/simpleWizard (added) * trunk/grails-app/views/simpleWizard/_javascripts.gsp (added) * trunk/grails-app/views/simpleWizard/assays.gsp (added) * trunk/grails-app/views/simpleWizard/columns.gsp (added) * trunk/grails-app/views/simpleWizard/missingFields.gsp (added) * trunk/grails-app/views/simpleWizard/overview.gsp (added) * trunk/grails-app/views/simpleWizard/samples.gsp (added) * trunk/grails-app/views/simpleWizard/save.gsp (added) * trunk/grails-app/views/simpleWizard/study.gsp (added) * trunk/test/unit/dbnp/studycapturing/SimpleWizardControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SimpleWizardTagLibTests.groovy (added) * trunk/web-app/css/buttons.css (modified) * trunk/web-app/css/simplewizard.css (added) * trunk/web-app/js/simpleWizard.js (added) * trunk/web-app/js/studywizard.js (modified) First version of a simple wizard Wed, 23 Feb 2011 12:25:46 GMT t.w.abma@… [1552] * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/views/importer/common/_properties_horizontal.gsp (modified) - duplicate fuzzymatched properties fixed, when a fuzzy match has ... Tue, 22 Feb 2011 16:45:11 GMT work@… [1551] * trunk/test/webtest/gscf/CreateStudyWebTests.groovy (modified) - fixed webtests to work properly in hudson (which means, they only ... Tue, 22 Feb 2011 15:48:03 GMT work@… [1550] * trunk/application.properties (modified) - gdt to 0.0.16, cleanup and improved warning if something is not right Tue, 22 Feb 2011 15:22:01 GMT work@… [1549] * trunk/application.properties (modified) - gdt updated to 0.1.15 (fix for Ubuntu's java compiler visiting the ... Tue, 22 Feb 2011 14:45:25 GMT robert@… [1548] * trunk/grails-app/taglib/dbnp/importer/ImporterTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/advancedQuery/assayresults.gsp (modified) * trunk/grails-app/views/advancedQuery/index.gsp (modified) * trunk/grails-app/views/advancedQuery/list.gsp (modified) * trunk/grails-app/views/advancedQuery/results.gsp (modified) * trunk/grails-app/views/advancedQuery/sampleresults.gsp (modified) * trunk/grails-app/views/advancedQuery/studyresults.gsp (modified) * trunk/web-app/css/advancedQuery.css (modified) * trunk/web-app/css/buttons.css (added) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/js/advancedQueryResults.js (modified) Preparation for using a simple wizard: some changes in tag libraries ... Tue, 22 Feb 2011 14:37:54 GMT work@… [1547] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapStudies.groovy (deleted) * trunk/grails-app/conf/dbnp/configuration/BootStrapTemplates.groovy (deleted) * trunk/grails-app/conf/dbnp/configuration/ExampleStudies.groovy (added) * trunk/grails-app/conf/dbnp/configuration/ExampleTemplates.groovy (added) - renamed bootstraps to example Tue, 22 Feb 2011 12:57:15 GMT work@… [1546] * trunk/grails-app/conf/BootStrap.groovy (modified) test commit to trigger hudson Tue, 22 Feb 2011 12:47:28 GMT work@… [1545] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapStudies.groovy (modified) * trunk/grails-app/conf/dbnp/configuration/BootStrapTemplates.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/StudyWizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp/studyexport/ExportService.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/test/integration/gscf/OntologyTests.groovy (modified) * trunk/test/integration/gscf/SubjectTests.groovy (modified) * trunk/test/unit/dbnp/studycapturing/AssayServiceTests.groovy (modified) - removed obsolete bgdt imports Tue, 22 Feb 2011 12:02:46 GMT work@… [1544] * trunk/grails-app/views/studyWizard/pages/_events.gsp (modified) * trunk/grails-app/views/studyWizard/pages/_page_four.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_one.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_three.gsp (deleted) * trunk/grails-app/views/studyWizard/pages/_page_two.gsp (deleted) - resolved #315 - removed obsolete templates