# # ChangeLog for / # # Generated by Trac 1.0.2 # Jan 20, 2021, 3:01:24 AM Mon, 25 Jan 2010 07:49:27 GMT jahn [120] * trunk/grails-app/views/eventDescription (added) * trunk/grails-app/views/eventDescription/create.gsp (added) * trunk/grails-app/views/eventDescription/edit.gsp (added) * trunk/grails-app/views/eventDescription/list.gsp (added) * trunk/grails-app/views/eventDescription/show.gsp (added) * trunk/grails-app/views/eventDescription/showMyProtocolEmpty.gsp (added) * trunk/grails-app/views/eventDescription/showMyProtocolFilled.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:49:05 GMT jahn [119] * trunk/grails-app/views/event (added) * trunk/grails-app/views/event/create.gsp (added) * trunk/grails-app/views/event/edit.gsp (added) * trunk/grails-app/views/event/list.gsp (added) * trunk/grails-app/views/event/partial.gsp (added) * trunk/grails-app/views/event/show.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:48:37 GMT jahn [118] * trunk/grails-app/views/common/_eventDescriptionTableRows.gsp (added) * trunk/grails-app/views/common/_jquerytmsetup.gsp (added) * trunk/grails-app/views/common/_partial.gsp (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:46:25 GMT jahn [117] * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:45:11 GMT jahn [116] * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:45:00 GMT jahn [115] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterInstance.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:44:20 GMT jahn [114] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:43:05 GMT jahn [113] * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:42:50 GMT jahn [112] * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:40:43 GMT jahn [111] * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) Committed as part of Event editing. Mon, 25 Jan 2010 07:38:19 GMT jahn [110] * trunk/grails-app/controllers/dbnp/studycapturing/EventController.groovy (added) Committed as part of Event editing. Mon, 25 Jan 2010 07:38:03 GMT jahn [109] * trunk/grails-app/controllers/dbnp/studycapturing/EventDescriptionController.groovy (added) Submitted as part of Event editing. Mon, 25 Jan 2010 07:37:37 GMT jahn [108] * trunk/grails-app/controllers/dbnp/studycapturing/ProtocolController.groovy (added) Submitted as part of Event editing. Fri, 22 Jan 2010 17:37:01 GMT duh [107] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (modified) - worked on the wizard inner workings - added date field element ... Fri, 22 Jan 2010 12:02:40 GMT keesvb [106] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (modified) * trunk/grails-app/controllers/TermController.groovy (modified) * trunk/grails-app/controllers/dbnp/clinicaldata (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalAssayController.groovy (added) * trunk/grails-app/controllers/dbnp/clinicaldata/ClinicalMeasurementController.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssay.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalAssayInstance.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalFloatData.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurementType.groovy (added) * trunk/grails-app/domain/dbnp/clinicaldata/ClinicalStringData.groovy (added) * trunk/grails-app/domain/dbnp/data (added) * trunk/grails-app/domain/dbnp/data/FeatureBase.groovy (added) * trunk/grails-app/domain/dbnp/data/Ontology.groovy (moved) * trunk/grails-app/domain/dbnp/data/Term.groovy (moved) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/services/dbnp (added) * trunk/grails-app/services/dbnp/clinicaldata (added) * trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (added) * trunk/grails-app/views/clinicalAssay (added) * trunk/grails-app/views/clinicalData (added) * trunk/src/java/dbnp (added) * trunk/src/java/dbnp/data (added) * trunk/src/java/dbnp/data/CleanDataLayer.java (added) * trunk/test/unit/dbnp/clinicaldata (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayInstanceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalAssayTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalDataLayerServiceTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalFloatDataTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementControllerTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalMeasurementTests.groovy (added) * trunk/test/unit/dbnp/clinicaldata/ClinicalStringDataTests.groovy (added) * trunk/test/unit/dbnp/data (added) * trunk/test/unit/dbnp/data/FeatureBaseTests.groovy (added) added first version of clean data layer specification and clinical ... Fri, 22 Jan 2010 11:37:14 GMT duh [105] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_study.gsp (modified) * trunk/web-app/js/wizard.js (modified) - Firefox 3.6 + firebug's XMLHttpRequest option break the wizard, ... Thu, 21 Jan 2010 13:01:09 GMT duh [104] * trunk/web-app/css/jquery-ui/images (added) * trunk/web-app/css/jquery-ui/images/ui-bg_flat_0_aaaaaa_40x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_flat_55_fbec88_40x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_75_d0e5f5_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_85_dfeffc_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_glass_95_fef1ec_1x400.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_gloss-wave_55_5c9ccc_500x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_inset-hard_100_f5f8f9_1x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_inset-hard_100_fcfdfd_1x100.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_217bc0_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_2e83ff_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_469bdd_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_6da8d5_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_cd0a0a_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_d8e7f3_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_f9bd01_256x240.png (added) - added the jquery-ui 'Redmon' images Thu, 21 Jan 2010 12:56:10 GMT duh [103] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/elements (deleted) * trunk/grails-app/views/wizard/pages/_study.gsp (moved) * trunk/web-app/css/jquery-ui/images (deleted) * trunk/web-app/css/jquery-ui/jquery-ui-1.7.2.custom.css (added) - added error handling to the wizard - changed jquery-ui interface ... Wed, 20 Jan 2010 16:10:37 GMT duh [102] * trunk/application.properties (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) - forgot to rename the afterSuccess argument from handleHelpTooltips ... Wed, 20 Jan 2010 16:01:26 GMT duh [101] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_navigation.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/web-app/js/wizard.js (modified) - refactored the wizard initial page to dynamically load pageOne, ... Wed, 20 Jan 2010 13:50:23 GMT keesvb [100] * trunk/application.properties (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) small cosmetic changes, enabled Study list menu link Tue, 19 Jan 2010 16:38:50 GMT duh [99] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/web-app/css/wizard.css (modified) - created nicer tooltips Tue, 19 Jan 2010 16:18:30 GMT duh [98] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/web-app/js/jquery.qtip-1.0.0-rc3.min.js (added) * trunk/web-app/js/wizard.js (modified) - created nicer tooltips Tue, 19 Jan 2010 15:26:24 GMT duh [97] * trunk/grails-app/conf/BootStrap.groovy (modified) - moved study bootstrap data down into the development if statement Tue, 19 Jan 2010 15:18:33 GMT duh [96] * trunk/grails-app/taglib/GSCFTagLib.groovy (deleted) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_jquerysetup.gsp (deleted) * trunk/grails-app/views/common/_jqueryuisetup.gsp (deleted) * trunk/grails-app/views/layouts/main.gsp (modified) - as of jQuery 1.4.0.1 the submitToRemote behaviour has changed which ... Tue, 19 Jan 2010 14:39:33 GMT ademcan [95] * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/study/show.gsp (modified) list and show for the studies list Tue, 19 Jan 2010 14:05:59 GMT duh [94] * trunk/grails-app/conf/DataSource.groovy (modified) - made development datasource system dependent (so Adem can use his ... Tue, 19 Jan 2010 13:56:22 GMT duh [93] * trunk/grails-app/conf/DataSource.groovy (modified) - made development datasource system dependent (so Adem can use his ... Tue, 19 Jan 2010 13:25:45 GMT duh [92] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/SubjectController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateController.groovy (added) * trunk/grails-app/controllers/dbnp/studycapturing/TemplateSubjectFieldController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_jquerysetup.gsp (modified) * trunk/grails-app/views/subject (added) * trunk/grails-app/views/template (added) * trunk/grails-app/views/templateSubjectField (added) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/test/unit/dbnp/studycapturing/SubjectControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldControllerTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) - added sample template data in bootstrap - upgraded jQuery - ... Tue, 19 Jan 2010 13:11:11 GMT ademcan [91] * trunk/application.properties (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/views/study/list.gsp (modified) * trunk/grails-app/views/study/show.gsp (modified) * trunk/grails-app/views/study/show_backup.gsp (added) list and show for the studies list Fri, 15 Jan 2010 14:10:15 GMT duh [90] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/js/wizard.js (added) - refactered wizard prototype - added tooltip / help support Thu, 14 Jan 2010 16:44:28 GMT duh [89] * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/wizard/elements (added) * trunk/grails-app/views/wizard/elements/_text.gsp (added) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/web-app/css/wizard.css (modified) * trunk/web-app/images/icons/famfamfam/help.png (added) - refactored some wizard code - templatizing and standardizing form ... Thu, 14 Jan 2010 14:00:05 GMT duh [88] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_error.gsp (added) * trunk/grails-app/views/wizard/common/_navigation.gsp (moved) * trunk/grails-app/views/wizard/common/_tabs.gsp (moved) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/grails-app/views/wizard/pages/_two.gsp (modified) * trunk/web-app/css/default_style.css (modified) * trunk/web-app/css/wizard.css (added) * trunk/web-app/images/spinner.gif (added) - refactored the wizard code a bit Wed, 13 Jan 2010 15:54:59 GMT duh [87] * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (modified) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (modified) * trunk/grails-app/views/wizard/common/_buttons.gsp (modified) * trunk/grails-app/views/wizard/common/_header.gsp (modified) * trunk/grails-app/views/wizard/common/_wizard.gsp (modified) * trunk/grails-app/views/wizard/index.gsp (modified) * trunk/grails-app/views/wizard/pages/_one.gsp (modified) * trunk/grails-app/views/wizard/pages/_three.gsp (modified) * trunk/grails-app/views/wizard/pages/_two.gsp (modified) - set keyword expansion Wed, 13 Jan 2010 15:53:32 GMT duh [86] * trunk (modified) * trunk/application.properties (modified) * trunk/grails-app/conf/Config.groovy (modified) * trunk/grails-app/controllers/dbnp/studycapturing/WizardController.groovy (added) * trunk/grails-app/taglib/GSCFTagLib.groovy (modified) * trunk/grails-app/taglib/dbnp (added) * trunk/grails-app/taglib/dbnp/studycapturing (added) * trunk/grails-app/taglib/dbnp/studycapturing/WizardTagLib.groovy (added) * trunk/grails-app/views/wizard (added) * trunk/grails-app/views/wizard/common (added) * trunk/grails-app/views/wizard/common/_buttons.gsp (added) * trunk/grails-app/views/wizard/common/_header.gsp (added) * trunk/grails-app/views/wizard/common/_wizard.gsp (added) * trunk/grails-app/views/wizard/index.gsp (added) * trunk/grails-app/views/wizard/pages (added) * trunk/grails-app/views/wizard/pages/_one.gsp (added) * trunk/grails-app/views/wizard/pages/_three.gsp (added) * trunk/grails-app/views/wizard/pages/_two.gsp (added) * trunk/test/unit/dbnp/studycapturing/WizardControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/WizardTagLibTests.groovy (added) - proof of concept AJAX-ified Grails WebFlow based wizard - @see ... Wed, 13 Jan 2010 14:25:28 GMT ademcan [85] * trunk/grails-app/controllers/dbnp (added) * trunk/grails-app/controllers/dbnp/studycapturing (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/views/language (added) * trunk/grails-app/views/language/create.gsp (added) * trunk/grails-app/views/language/edit.gsp (added) * trunk/grails-app/views/language/list.gsp (added) * trunk/grails-app/views/language/show.gsp (added) * trunk/grails-app/views/study (added) * trunk/grails-app/views/study/create.gsp (added) * trunk/grails-app/views/study/edit.gsp (added) * trunk/grails-app/views/study/list.gsp (added) * trunk/grails-app/views/study/list_backup.gsp (added) * trunk/grails-app/views/study/show.gsp (added) * trunk/src/templates (added) * trunk/src/templates/artifacts (added) * trunk/src/templates/scaffolding (added) * trunk/src/templates/war (added) the templates for the Study class, I have modified the scaffolding view. Wed, 13 Jan 2010 12:55:45 GMT keesvb [84] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/TemplateField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateFieldType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/TemplateSubjectField.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/test/unit/dbnp/studycapturing/TemplateFieldTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateSubjectFieldsTests.groovy (added) updated domain classes: added comments, carried out some normalization Mon, 11 Jan 2010 13:44:03 GMT ademcan [83] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/TemplateController.groovy (deleted) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/test/unit/magetab/adf/TermsourceTests.groovy (added) * trunk/test/unit/magetab/idf/ExperimentalInfoTests.groovy (added) modification of some magetab domain classes Mon, 11 Jan 2010 09:37:17 GMT keesvb [82] * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/MAGEAssay.groovy (moved) renamed magetab Assay class to avoid name conflicts Mon, 11 Jan 2010 09:33:01 GMT keesvb [81] * trunk/grails-app/domain/dbnp/studycapturing/Assay.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/AssayType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/EventDescription.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SamplingEvent.groovy (added) * trunk/test/unit/dbnp/studycapturing/AssayTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventDescriptionTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SampleTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SamplingEventTests.groovy (added) * trunk/tests/create_protocol_parameter (modified) updated domain classes: added event description, sample and assay Thu, 07 Jan 2010 12:38:25 GMT keesvb [80] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/controllers/OntologyController.groovy (added) * trunk/grails-app/controllers/ProtocolController.groovy (added) * trunk/grails-app/controllers/ProtocolParameterController.groovy (added) * trunk/grails-app/controllers/TermController.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Event.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolInstance.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameterType.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) * trunk/test/unit/OntologyControllerTests.groovy (added) * trunk/test/unit/ProtocolControllerTests.groovy (added) * trunk/test/unit/ProtocolParameterControllerTests.groovy (added) * trunk/test/unit/TermControllerTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/EventTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolInstanceTests.groovy (added) * trunk/tests (added) * trunk/tests/create_protocol_parameter (added) * trunk/tests/create_template_study (added) added Event and ProtocolInstance classes, updated DataSource to work ... Tue, 05 Jan 2010 16:32:25 GMT robertkerkhoven [79] * trunk/grails-app/domain/dbnp/transcriptomics/data (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Chip.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/ChipAnnotation.groovy (added) * trunk/grails-app/domain/dbnp/transcriptomics/data/Expression.groovy (added) Added three domain classes for the storage of micro-array data. - ... Tue, 05 Jan 2010 10:55:20 GMT keesvb [78] * trunk/grails-app/controllers/TemplateController.groovy (added) * trunk/test/unit/TemplateControllerTests.groovy (added) added template controller Tue, 05 Jan 2010 10:54:42 GMT keesvb [77] * trunk/grails-app/domain/dbnp/studycapturing/Ontology.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Protocol.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/ProtocolParameter.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/SubjectGroup.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Template.groovy (added) * trunk/grails-app/domain/dbnp/studycapturing/Term.groovy (added) * trunk/test/unit/dbnp (added) * trunk/test/unit/dbnp/studycapturing (added) * trunk/test/unit/dbnp/studycapturing/GroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/OntologyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolParameterTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/StudyTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectGroupTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/SubjectTests.groovy (added) * trunk/test/unit/dbnp/studycapturing/TemplateTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics (added) * trunk/test/unit/dbnp/transcriptomics/magetab (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ArrayDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/CompositeElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/DesignElementTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/FeatureTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixColumnTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowIdTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/MatrixRowTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/ReporterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/adf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/CommentTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/FactorTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/InvestigationDesignTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/OntologyTermTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ParameterTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PersonTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/ProtocolTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/PublicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/TermSourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/idf/UserDefinedAttributeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/AssayTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DataObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrixTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/EdgeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractObjectTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/FactorValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/HybridizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ImageTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/LabeledExtractTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/MaterialTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeListTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NodeTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/NormalizationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ParameterValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProtocolApplicationTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ProviderTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationshipTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SampleTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ScanTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/SourceTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/URIValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/UserDefinedValueTests.groovy (added) * trunk/test/unit/dbnp/transcriptomics/magetab/sdrf/ValueTests.groovy (added) sorry, forgot to commit the classes Tue, 05 Jan 2010 10:52:41 GMT duh [76] * trunk/test/unit/dbnp (deleted) - removed dbnp tests Tue, 05 Jan 2010 10:50:29 GMT duh [75] * trunk/application.properties (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (deleted) - removed Study domain class (kees forgot to submit his domain ... Tue, 05 Jan 2010 10:39:34 GMT duh [74] * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/QueryController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) - set keyword expansion Tue, 05 Jan 2010 10:38:58 GMT duh [73] * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) - Adem's previous commit included the missing domain class... ... Tue, 05 Jan 2010 10:21:31 GMT ademcan [72] * trunk/application.properties (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/domain/dbnp/studycapturing/Study.groovy (added) * trunk/test/unit/dbnp (added) * trunk/test/unit/dbnp/studycapturing (added) * trunk/test/unit/magetab (added) * trunk/test/unit/magetab/adf (added) * trunk/test/unit/magetab/idf (added) modification of domain classes organization Tue, 05 Jan 2010 10:11:41 GMT duh [71] * trunk (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) - application broke due to inclusion of nonexistant domain classes Mon, 04 Jan 2010 11:13:36 GMT keesvb [70] * trunk/application.properties (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/ExperimentController.groovy (deleted) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/controllers/PersonController.groovy (deleted) * trunk/grails-app/controllers/ProtocolController.groovy (deleted) * trunk/grails-app/controllers/PublicationController.groovy (deleted) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/domain/Chip.groovy (deleted) * trunk/grails-app/domain/ChipAnnotation.groovy (deleted) * trunk/grails-app/domain/Data.groovy (deleted) * trunk/grails-app/domain/DataType.groovy (deleted) * trunk/grails-app/domain/Experiment.groovy (deleted) * trunk/grails-app/domain/ExperimentSample.groovy (deleted) * trunk/grails-app/domain/Expression.groovy (deleted) * trunk/grails-app/domain/MetaData.groovy (deleted) * trunk/grails-app/domain/MetaField.groovy (deleted) * trunk/grails-app/domain/MetaFieldGroup.groovy (deleted) * trunk/grails-app/domain/MetaFieldOption.groovy (deleted) * trunk/grails-app/domain/MetaFieldType.groovy (deleted) * trunk/grails-app/domain/MetaObject.groovy (deleted) * trunk/grails-app/domain/MetaTemplate.groovy (deleted) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (deleted) * trunk/grails-app/domain/Sample.groovy (deleted) * trunk/grails-app/domain/SampleType.groovy (deleted) * trunk/grails-app/domain/Source.groovy (deleted) * trunk/grails-app/domain/Species.groovy (deleted) * trunk/grails-app/domain/Strain.groovy (deleted) * trunk/grails-app/domain/Study.groovy (deleted) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (deleted) * trunk/grails-app/domain/dbnp (added) * trunk/grails-app/domain/dbnp/studycapturing (added) * trunk/grails-app/domain/dbnp/transcriptomics (added) * trunk/grails-app/domain/dbnp/transcriptomics/magetab (moved) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/MAGEProtocol.groovy (moved) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Assay.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/dbnp/transcriptomics/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/i18n/messages.properties (modified) * trunk/grails-app/i18n/messages_de.properties (modified) * trunk/grails-app/i18n/messages_nl.properties (modified) * trunk/test/unit/DataControllerTests.groovy (deleted) * trunk/test/unit/DataTypeControllerTests.groovy (deleted) * trunk/test/unit/ExperimentControllerTests.groovy (deleted) * trunk/test/unit/ExperimentSampleControllerTests.groovy (deleted) * trunk/test/unit/MetaDataControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldGroupControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldOptionControllerTests.groovy (deleted) * trunk/test/unit/MetaFieldTypeControllerTests.groovy (deleted) * trunk/test/unit/PersonControllerTests.groovy (deleted) * trunk/test/unit/ProtocolControllerTests.groovy (deleted) * trunk/test/unit/PublicationControllerTests.groovy (deleted) * trunk/test/unit/magetab (deleted) * trunk/web-app/WEB-INF/applicationContext.xml (modified) * trunk/web-app/WEB-INF/sitemesh.xml (modified) * trunk/web-app/WEB-INF/tld/grails.tld (modified) updated to Grails 1.2, restructured packages, added some domain ... Wed, 16 Dec 2009 16:14:45 GMT duh [69] * trunk/grails-app/domain/Chip.groovy (modified) * trunk/grails-app/domain/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/Data.groovy (modified) * trunk/grails-app/domain/DataType.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/ExperimentSample.groovy (modified) * trunk/grails-app/domain/Expression.groovy (modified) * trunk/grails-app/domain/MetaData.groovy (modified) * trunk/grails-app/domain/MetaField.groovy (modified) * trunk/grails-app/domain/MetaFieldGroup.groovy (modified) * trunk/grails-app/domain/MetaFieldOption.groovy (modified) * trunk/grails-app/domain/MetaFieldType.groovy (modified) * trunk/grails-app/domain/MetaObject.groovy (modified) * trunk/grails-app/domain/MetaTemplate.groovy (modified) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (modified) * trunk/grails-app/domain/Sample.groovy (modified) * trunk/grails-app/domain/SampleType.groovy (modified) * trunk/grails-app/domain/Source.groovy (modified) * trunk/grails-app/domain/Species.groovy (modified) * trunk/grails-app/domain/Strain.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (modified) * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/magetab/adf/CompositeElement.groovy (modified) * trunk/grails-app/domain/magetab/adf/DesignElement.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRowId.groovy (modified) * trunk/grails-app/domain/magetab/adf/Reporter.groovy (modified) * trunk/grails-app/domain/magetab/idf/Comment.groovy (modified) * trunk/grails-app/domain/magetab/idf/ExperimentalInfo.groovy (modified) * trunk/grails-app/domain/magetab/idf/Factor.groovy (modified) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/Parameter.groovy (modified) * trunk/grails-app/domain/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/magetab/idf/UserDefinedAttribute.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ArrayData.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Assay.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DataObject.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayData.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Edge.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ExtractObj.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/FactorValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Hybridization.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Image.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/LabeledExtract.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Material.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Node.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/NodeList.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ParameterValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/ProtocolApplication.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Provider.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/SampleAndDataRelationship.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Scan.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/URIValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/UserDefinedValue.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Value.groovy (modified) * trunk/grails-app/domain/nimble/Profile.groovy (modified) * trunk/grails-app/domain/nimble/User.groovy (modified) - set keyword expansion Wed, 16 Dec 2009 16:13:40 GMT duh [68] * trunk/grails-app/domain/Chip.groovy (modified) * trunk/grails-app/domain/ChipAnnotation.groovy (modified) * trunk/grails-app/domain/Expression.groovy (modified) - changes headers conform standard Wed, 16 Dec 2009 16:09:26 GMT duh [67] * trunk (modified) * trunk/application.properties (modified) * trunk/gscf.launch (modified) - updated to latest stable (grails 1.1.2) Tue, 15 Dec 2009 21:24:52 GMT robertkerkhoven [66] * trunk/grails-app/domain/Chip.groovy (added) * trunk/grails-app/domain/ChipAnnotation.groovy (added) * trunk/grails-app/domain/Expression.groovy (added) Added 3 domain classes (groovy) for storing chip annotation and ... Tue, 15 Dec 2009 18:16:33 GMT keesvb [65] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/views/load/index.gsp (modified) changed the ISATAB upload function so that file upload works (deleted ... Tue, 15 Dec 2009 15:37:11 GMT ademcan [64] * trunk/grails-app/controllers/LoadController.groovy (modified) * trunk/grails-app/domain/magetab/idf/Comment.groovy (added) * trunk/grails-app/domain/magetab/idf/ExperimentalInfo.groovy (added) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (modified) * trunk/test/unit/magetab/idf/CommentTests.groovy (added) Loading new magetab data in the database from IDF file. Mon, 14 Dec 2009 09:48:04 GMT ademcan [63] * trunk/grails-app/controllers/LoadController.groovy (added) * trunk/grails-app/controllers/PersonController.groovy (added) * trunk/grails-app/controllers/ProtocolController.groovy (added) * trunk/grails-app/controllers/PublicationController.groovy (added) * trunk/grails-app/domain/magetab/idf/Person.groovy (modified) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (modified) * trunk/grails-app/domain/magetab/idf/Publication.groovy (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/load (added) * trunk/grails-app/views/load/index.gsp (added) * trunk/grails-app/views/person (added) * trunk/grails-app/views/protocol (added) * trunk/grails-app/views/publication (added) * trunk/test/unit/PersonControllerTests.groovy (added) * trunk/test/unit/ProtocolControllerTests.groovy (added) * trunk/test/unit/PublicationControllerTests.groovy (added) Parsing and Loading information from an IDF file (MageTab). Actually ... Tue, 08 Dec 2009 15:34:40 GMT keesvb [62] * trunk/application.properties (modified) * trunk/grails-app/domain/magetab/sdrf/ExtractObj.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractObjTests.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractObjectTests.groovy (added) additional commit, renamed Extract to ExtractObj Tue, 08 Dec 2009 15:33:01 GMT keesvb [61] * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Extract.groovy (deleted) fixed the bugs: Hibernate had difficulty with a field named 'version' ... Tue, 24 Nov 2009 09:51:05 GMT keesvb [60] * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) changed typo Thu, 19 Nov 2009 09:25:46 GMT ademcan [59] * trunk/grails-app/domain/magetab/adf/Feature.groovy (deleted) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (modified) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (modified) * trunk/grails-app/domain/magetab/adf/TermSource.groovy (deleted) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (modified) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (modified) * trunk/grails-app/domain/magetab/idf/TermSource.groovy (deleted) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (modified) * trunk/grails-app/domain/magetab/sdrf/Sample.groovy (deleted) * trunk/grails-app/domain/magetab/sdrf/Source.groovy (deleted) Added magetab corrected domain classes, works fine with a postgreSQL ... Tue, 17 Nov 2009 10:15:05 GMT ademcan [58] * trunk/grails-app/domain/magetab/adf (added) * trunk/grails-app/domain/magetab/adf/ArrayDesign.groovy (added) * trunk/grails-app/domain/magetab/adf/CompositeElement.groovy (added) * trunk/grails-app/domain/magetab/adf/DesignElement.groovy (added) * trunk/grails-app/domain/magetab/adf/Feature.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixColumn.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixRow.groovy (added) * trunk/grails-app/domain/magetab/adf/MatrixRowId.groovy (added) * trunk/grails-app/domain/magetab/adf/Reporter.groovy (added) * trunk/grails-app/domain/magetab/adf/TermSource.groovy (added) * trunk/grails-app/domain/magetab/sdrf (added) * trunk/grails-app/domain/magetab/sdrf/ArrayData.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ArrayDataMatrix.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Assay.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DataObject.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayData.groovy (added) * trunk/grails-app/domain/magetab/sdrf/DerivedArrayDataMatrix.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Edge.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Extract.groovy (added) * trunk/grails-app/domain/magetab/sdrf/FactorValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Hybridization.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Image.groovy (added) * trunk/grails-app/domain/magetab/sdrf/LabeledExtract.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Material.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Node.groovy (added) * trunk/grails-app/domain/magetab/sdrf/NodeList.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Normalization.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ParameterValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/ProtocolApplication.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Provider.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Sample.groovy (added) * trunk/grails-app/domain/magetab/sdrf/SampleAndDataRelationship.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Scan.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Source.groovy (added) * trunk/grails-app/domain/magetab/sdrf/URIValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/UserDefinedValue.groovy (added) * trunk/grails-app/domain/magetab/sdrf/Value.groovy (added) * trunk/test/unit/magetab/adf (added) * trunk/test/unit/magetab/adf/ArrayDesignTests.groovy (added) * trunk/test/unit/magetab/adf/CompositeElementTests.groovy (added) * trunk/test/unit/magetab/adf/DesignElementTests.groovy (added) * trunk/test/unit/magetab/adf/FeatureTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixColumnTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixRowIdTests.groovy (added) * trunk/test/unit/magetab/adf/MatrixRowTests.groovy (added) * trunk/test/unit/magetab/adf/ReporterTests.groovy (added) * trunk/test/unit/magetab/adf/TermSourceTests.groovy (added) * trunk/test/unit/magetab/sdrf (added) * trunk/test/unit/magetab/sdrf/ArrayDataMatrixTests.groovy (added) * trunk/test/unit/magetab/sdrf/ArrayDataTests.groovy (added) * trunk/test/unit/magetab/sdrf/AssayTests.groovy (added) * trunk/test/unit/magetab/sdrf/DataObjectTests.groovy (added) * trunk/test/unit/magetab/sdrf/DerivedArrayDataMatrixTests.groovy (added) * trunk/test/unit/magetab/sdrf/DerivedArrayDataTests.groovy (added) * trunk/test/unit/magetab/sdrf/EdgeTests.groovy (added) * trunk/test/unit/magetab/sdrf/ExtractTests.groovy (added) * trunk/test/unit/magetab/sdrf/FactorValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/HybridizationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ImageTests.groovy (added) * trunk/test/unit/magetab/sdrf/LabeledExtractTests.groovy (added) * trunk/test/unit/magetab/sdrf/MaterialTests.groovy (added) * trunk/test/unit/magetab/sdrf/NodeListTests.groovy (added) * trunk/test/unit/magetab/sdrf/NodeTests.groovy (added) * trunk/test/unit/magetab/sdrf/NormalizationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ParameterValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/ProtocolApplicationTests.groovy (added) * trunk/test/unit/magetab/sdrf/ProviderTests.groovy (added) * trunk/test/unit/magetab/sdrf/SampleAndDataRelationshipTests.groovy (added) * trunk/test/unit/magetab/sdrf/SampleTests.groovy (added) * trunk/test/unit/magetab/sdrf/ScanTests.groovy (added) * trunk/test/unit/magetab/sdrf/SourceTests.groovy (added) * trunk/test/unit/magetab/sdrf/URIValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/UserDefinedValueTests.groovy (added) * trunk/test/unit/magetab/sdrf/ValueTests.groovy (added) Adding magetab.adf and magetab.sdrf domain classes Tue, 17 Nov 2009 09:30:17 GMT keesvb [57] * trunk/test/unit/FakeObjectControllerTests.groovy (deleted) * trunk/test/unit/magetab/idf/PersonTests.groovy (added) * trunk/test/unit/magetab/idf/PublicationTests.groovy (added) * trunk/test/unit/magetab/idf/TermSourceTests.groovy (added) * trunk/test/unit/magetab/idf/UserDefinedAttributeTests.groovy (added) deleted test object, added some generated tests Tue, 17 Nov 2009 09:27:32 GMT keesvb [56] * trunk/grails-app/domain/magetab (added) * trunk/grails-app/domain/magetab/idf (added) * trunk/grails-app/domain/magetab/idf/Factor.groovy (added) * trunk/grails-app/domain/magetab/idf/InvestigationDesign.groovy (added) * trunk/grails-app/domain/magetab/idf/OntologyTerm.groovy (added) * trunk/grails-app/domain/magetab/idf/Parameter.groovy (added) * trunk/grails-app/domain/magetab/idf/Person.groovy (added) * trunk/grails-app/domain/magetab/idf/Protocol.groovy (added) * trunk/grails-app/domain/magetab/idf/Publication.groovy (added) * trunk/grails-app/domain/magetab/idf/TermSource.groovy (added) * trunk/grails-app/domain/magetab/idf/UserDefinedAttribute.groovy (added) * trunk/test/unit/FakeObjectControllerTests.groovy (added) * trunk/test/unit/magetab (added) * trunk/test/unit/magetab/idf (added) * trunk/test/unit/magetab/idf/FactorTests.groovy (added) * trunk/test/unit/magetab/idf/InvestigationDesignTests.groovy (added) * trunk/test/unit/magetab/idf/OntologyTermTests.groovy (added) * trunk/test/unit/magetab/idf/ParameterTests.groovy (added) * trunk/test/unit/magetab/idf/ProtocolTests.groovy (added) Added MAGE-TAB IDF data domain model Wed, 11 Nov 2009 13:50:01 GMT duh [55] * trunk/grails-app/domain/nimble/NimbleProfile.groovy (deleted) * trunk/grails-app/domain/nimble/NimbleUser.groovy (deleted) - removed to obsolete / duplicate nimble domain classes Mon, 09 Nov 2009 13:04:00 GMT keesvb [54] * trunk/application.properties (modified) * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/taglib/GSCFTagLib.groovy (added) * trunk/grails-app/views/common/_jquerysetup.gsp (added) * trunk/grails-app/views/common/_jqueryuisetup.gsp (added) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/query/index.gsp (modified) * trunk/test/unit/GSCFTagLibTests.groovy (added) Added fix for postgres problems, refactored JQuery code in tag library Fri, 06 Nov 2009 14:48:47 GMT duh [53] * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (modified) * trunk/grails-app/conf/NimbleUrlMappings.groovy (modified) * trunk/grails-app/conf/spring/resources.groovy (modified) * trunk/grails-app/controllers/ExperimentController.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (modified) * trunk/grails-app/controllers/QueryController.groovy (modified) * trunk/grails-app/controllers/StudyController.groovy (modified) -added keyword expansion Fri, 06 Nov 2009 14:28:43 GMT duh [52] * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/layouts/nimble.gsp (added) * trunk/web-app/css/nimble.css (added) - created a special nimble layout which uses some of the nimble tags ... Fri, 06 Nov 2009 12:45:41 GMT duh [51] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (added) * trunk/grails-app/conf/NimbleConfig.groovy (added) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (added) * trunk/grails-app/conf/NimbleUrlMappings.groovy (added) * trunk/grails-app/domain/nimble (added) * trunk/grails-app/domain/nimble/NimbleProfile.groovy (added) * trunk/grails-app/domain/nimble/NimbleUser.groovy (added) * trunk/grails-app/domain/nimble/Profile.groovy (added) * trunk/grails-app/domain/nimble/User.groovy (added) * trunk/grails-app/views/templates/nimble (added) * trunk/grails-app/views/templates/nimble/help (added) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (added) * trunk/grails-app/views/templates/nimble/login (added) * trunk/grails-app/views/templates/nimble/login/_login.gsp (added) * trunk/grails-app/views/templates/nimble/mail (added) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (added) * trunk/grails-app/views/templates/nimble/navigation (added) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (added) * trunk/grails-app/views/templates/nimble/profile (added) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (added) -re-added nimble snapshot 0.3 Fri, 06 Nov 2009 12:24:35 GMT duh [50] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (deleted) * trunk/grails-app/conf/NimbleConfig.groovy (deleted) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (deleted) * trunk/grails-app/conf/NimbleUrlMappings.groovy (deleted) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/nimble (deleted) * trunk/grails-app/views/templates/nimble (deleted) -removed nimble (to reimplement it in the next commit) Thu, 05 Nov 2009 13:38:35 GMT duh [49] * trunk/grails-app/conf/NimbleConfig.groovy (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/templates/nimble/help (added) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (added) * trunk/grails-app/views/templates/nimble/mail (added) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (added) * trunk/grails-app/views/templates/nimble/navigation (added) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (added) * trunk/grails-app/views/templates/nimble/profile (added) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (added) - added temporary fix for jQuery vs Nimble issue - @see ... Thu, 05 Nov 2009 12:46:30 GMT duh [48] * trunk/grails-app/conf/NimbleBootStrap.groovy (added) * trunk/grails-app/conf/NimbleConfig.groovy (added) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (added) * trunk/grails-app/conf/NimbleUrlMappings.groovy (added) * trunk/grails-app/views/templates/nimble (added) * trunk/grails-app/views/templates/nimble/login (added) * trunk/grails-app/views/templates/nimble/login/_login.gsp (added) - refactored nimble from the external intient repository to the ... Thu, 05 Nov 2009 12:46:04 GMT duh [47] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (deleted) * trunk/grails-app/conf/NimbleConfig.groovy (deleted) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (deleted) * trunk/grails-app/conf/NimbleUrlMappings.groovy (deleted) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/domain/gscf (deleted) * trunk/grails-app/domain/nimble (added) * trunk/grails-app/domain/nimble/profile.groovy (added) * trunk/grails-app/domain/nimble/user.groovy (added) * trunk/grails-app/views/authAction (deleted) * trunk/grails-app/views/authGroup (deleted) * trunk/grails-app/views/authRole (deleted) * trunk/grails-app/views/authUser (deleted) * trunk/grails-app/views/templates/nimble (deleted) * trunk/test/unit/AuthActionControllerTests.groovy (deleted) * trunk/test/unit/AuthActionTests.groovy (deleted) * trunk/test/unit/AuthGroupControllerTests.groovy (deleted) * trunk/test/unit/AuthGroupTests.groovy (deleted) * trunk/test/unit/AuthRoleControllerTests.groovy (deleted) * trunk/test/unit/AuthRoleTests.groovy (deleted) * trunk/test/unit/AuthUserControllerTests.groovy (deleted) * trunk/test/unit/AuthUserTests.groovy (deleted) - refactored nimble from the external intient repository to the ... Thu, 05 Nov 2009 12:13:26 GMT duh [46] * trunk/grails-app/views/layouts/main.gsp (modified) - fixed javascript tags in main layout - TODO! nimble is now ... Thu, 05 Nov 2009 11:00:27 GMT duh [45] * trunk/grails-app/conf/DataSource.groovy (modified) - added some migration documentation to the datasource configuration Thu, 05 Nov 2009 10:42:38 GMT duh [44] * trunk/grails-app/conf/BuildConfig.groovy (modified) * trunk/grails-app/conf/NimbleConfig.groovy (modified) - nimble is now in the default plugin repository, removed the intient ... Tue, 03 Nov 2009 12:51:10 GMT ademcan [43] * trunk/grails-app/conf/DataSource.groovy (modified) Changing the url for PostgreSQL Mon, 02 Nov 2009 13:48:46 GMT keesvb [42] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/lib/postgresql-jdbc3.jar (added) changed database to postgres, works well too :-) Mon, 02 Nov 2009 12:05:54 GMT keesvb [41] * trunk/grails-app/conf/UrlMappings.groovy (modified) * trunk/grails-app/controllers/HomeController.groovy (added) * trunk/grails-app/controllers/QueryController.groovy (added) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/home (added) * trunk/grails-app/views/home/index.gsp (moved) * trunk/grails-app/views/query/index.gsp (added) * trunk/test/unit/HomeControllerTests.groovy (added) * trunk/test/unit/QueryControllerTests.groovy (added) changed index and moved it to Home controller/view structure, put ... Thu, 29 Oct 2009 16:46:11 GMT keesvb [40] * trunk/grails-app/conf/DataSource.groovy (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (modified) * trunk/grails-app/controllers/ExperimentController.groovy (added) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/study (deleted) * trunk/lib/mysql-connector-java-5.1.8-bin.jar (added) changed study and experiment schema, added mysql production database Thu, 29 Oct 2009 15:06:49 GMT duh [39] * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/controllers/ErrorController.groovy (deleted) * trunk/grails-app/controllers/StudyController.groovy (modified) * trunk/grails-app/controllers/TestController.groovy (deleted) * trunk/grails-app/views/index.gsp (modified) - removed obsolete controllers and logic - update temporary debug ... Thu, 29 Oct 2009 13:14:40 GMT duh [38] * trunk/grails-app/views/index.gsp (modified) - added a debug line to index.gsp showing development credentials Thu, 29 Oct 2009 13:01:32 GMT duh [37] * trunk/application.properties (modified) * trunk/grails-app/conf/NimbleBootStrap.groovy (added) * trunk/grails-app/conf/NimbleConfig.groovy (added) * trunk/grails-app/conf/NimbleSecurityFilters.groovy (added) * trunk/grails-app/conf/NimbleUrlMappings.groovy (added) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/domain/gscf (added) * trunk/grails-app/domain/gscf/Profile.groovy (added) * trunk/grails-app/domain/gscf/User.groovy (added) * trunk/grails-app/i18n/shiro.properties (added) * trunk/grails-app/realms (added) * trunk/grails-app/views/common/_login_panel.gsp (modified) * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/grails-app/views/templates (added) * trunk/grails-app/views/templates/nimble (added) * trunk/grails-app/views/templates/nimble/help (added) * trunk/grails-app/views/templates/nimble/help/_accountcreationpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_passwordpolicy.gsp (added) * trunk/grails-app/views/templates/nimble/help/_usernamepolicy.gsp (added) * trunk/grails-app/views/templates/nimble/login (added) * trunk/grails-app/views/templates/nimble/login/_login.gsp (added) * trunk/grails-app/views/templates/nimble/mail (added) * trunk/grails-app/views/templates/nimble/mail/_accountregistration_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_emailchange_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_email.gsp (added) * trunk/grails-app/views/templates/nimble/mail/_forgottenpassword_external_email.gsp (added) * trunk/grails-app/views/templates/nimble/navigation (added) * trunk/grails-app/views/templates/nimble/navigation/_topnavigation.gsp (added) * trunk/grails-app/views/templates/nimble/profile (added) * trunk/grails-app/views/templates/nimble/profile/_banner.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_currentstatus.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_emailupdated.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_left.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_miniprofile.gsp (added) * trunk/grails-app/views/templates/nimble/profile/_socialmedia.gsp (added) * trunk/src/sass (added) * trunk/src/sass/_rounded.sass (added) * trunk/src/sass/_uielements.sass (added) - installed and implemented nimble plugin - setup basic nimble ... Thu, 29 Oct 2009 10:48:18 GMT duh [36] * trunk/web-app/js/topnav.js (modified) -query interface was laying on top of the topnavigation menu, changed ... Wed, 28 Oct 2009 15:08:08 GMT keesvb [35] * trunk/grails-app/controllers/StudyController.groovy (added) * trunk/grails-app/domain/Study.groovy (modified) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/query (added) * trunk/grails-app/views/study (added) * trunk/grails-app/views/study/create.gsp (added) * trunk/grails-app/views/study/edit.gsp (added) * trunk/grails-app/views/study/list.gsp (added) * trunk/grails-app/views/study/show.gsp (added) * trunk/web-app/css/jquery-ui (added) * trunk/web-app/css/jquery-ui/images (added) * trunk/web-app/css/jquery-ui/images/ui-bg_diagonal-maze_20_6e4f1c_10x10.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_diagonal-maze_40_000000_10x10.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_10_eceadf_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_10_f8f7f6_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_eceadf_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_f7f3de_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_15_ffffff_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_65_654b24_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-bg_fine-grain_68_b83400_60x60.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_222222_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_3572ac_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_8c291d_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_b83400_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_fbdb93_256x240.png (added) * trunk/web-app/css/jquery-ui/images/ui-icons_ffffff_256x240.png (added) * trunk/web-app/css/jquery-ui/jquery-ui-1.7.2.custom.css (added) * trunk/web-app/js/jquery-ui-1.7.2.custom.min.js (added) added jquery-ui manually (install-jquery-plugin seems broken) and ... Tue, 27 Oct 2009 12:32:34 GMT duh [34] * trunk/application.properties (modified) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/conf/BuildConfig.groovy (added) * trunk/grails-app/controllers/AuthActionController.groovy (deleted) * trunk/grails-app/controllers/AuthGroupController.groovy (deleted) * trunk/grails-app/controllers/AuthRoleController.groovy (deleted) * trunk/grails-app/controllers/AuthUserController.groovy (deleted) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/domain/AuthAction.groovy (deleted) * trunk/grails-app/domain/AuthGroup.groovy (deleted) * trunk/grails-app/domain/AuthRole.groovy (deleted) * trunk/grails-app/domain/AuthUser.groovy (deleted) * trunk/grails-app/domain/Study.groovy.prej (deleted) * trunk/grails-app/services/AuthorizationService.groovy (deleted) -removed testing authorization code -looking at 'apache shiro' and / ... Tue, 27 Oct 2009 10:38:38 GMT duh [33] * trunk/grails-app/conf/BaseFilters.groovy (modified) -set keyword expansion Tue, 27 Oct 2009 09:31:59 GMT duh [32] * trunk/grails-app/conf/BaseFilters.groovy (modified) -changed method names etc Mon, 26 Oct 2009 14:17:02 GMT gajula [31] * trunk/grails-app/domain/Data.groovy (modified) * trunk/grails-app/domain/DataType.groovy (modified) * trunk/grails-app/domain/Experiment.groovy (modified) * trunk/grails-app/domain/ExperimentSample.groovy (modified) * trunk/grails-app/domain/MetaData.groovy (modified) * trunk/grails-app/domain/MetaField.groovy (modified) * trunk/grails-app/domain/MetaFieldGroup.groovy (modified) * trunk/grails-app/domain/MetaFieldOption.groovy (modified) * trunk/grails-app/domain/MetaFieldType.groovy (modified) * trunk/grails-app/domain/MetaObject.groovy (modified) * trunk/grails-app/domain/MetaTemplate.groovy (modified) * trunk/grails-app/domain/MetaTemplateMetaField.groovy (modified) * trunk/grails-app/domain/Sample.groovy (modified) * trunk/grails-app/domain/SampleType.groovy (modified) * trunk/grails-app/domain/Source.groovy (modified) * trunk/grails-app/domain/Strain.groovy (modified) * trunk/grails-app/domain/StudyTypeMetaTemplate.groovy (modified) Added Keyword Expansion *.groovy Mon, 26 Oct 2009 14:05:34 GMT gajula [30] * trunk/grails-app/domain/Species.groovy (modified) Check Keyword Expansion Species.groovy Mon, 26 Oct 2009 13:00:46 GMT duh [29] * trunk/grails-app/conf/BaseFilters.groovy (added) * trunk/grails-app/conf/BootStrap.groovy (modified) * trunk/grails-app/controllers/BaseController.groovy (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/web-app/css/default_style.css (moved) * trunk/web-app/css/login_panel.css (modified) * trunk/web-app/images/default_style (added) * trunk/web-app/images/default_style/body_bg.gif (added) * trunk/web-app/images/default_style/header.png (added) * trunk/web-app/images/default_style/login_panel (added) * trunk/web-app/images/default_style/login_panel/Thumbs.db (added) * trunk/web-app/images/default_style/login_panel/bg.jpg (added) * trunk/web-app/images/default_style/login_panel/bt_close.png (added) * trunk/web-app/images/default_style/login_panel/bt_login.png (added) * trunk/web-app/images/default_style/login_panel/bt_open.png (added) * trunk/web-app/images/default_style/login_panel/bt_register.png (added) * trunk/web-app/images/default_style/login_panel/tab_b.png (added) * trunk/web-app/images/default_style/login_panel/tab_l.png (added) * trunk/web-app/images/default_style/login_panel/tab_m.png (added) * trunk/web-app/images/default_style/login_panel/tab_r.png (added) * trunk/web-app/images/default_style/tables (added) * trunk/web-app/images/default_style/tables/shadow.jpg (added) * trunk/web-app/images/default_style/tables/sorted_asc.gif (added) * trunk/web-app/images/default_style/tables/sorted_desc.gif (added) * trunk/web-app/images/default_style/topnav (added) * trunk/web-app/images/default_style/topnav/dropdown_linkbg.gif (added) * trunk/web-app/images/default_style/topnav/header_bg.gif (added) * trunk/web-app/images/default_style/topnav/subnav_btn.gif (added) * trunk/web-app/images/default_style/topnav/topnav_bg.gif (added) * trunk/web-app/images/default_style/topnav/topnav_hover.gif (added) * trunk/web-app/images/skin (deleted) - created configurable styles (handled in conf/BaseFilters.groovy) - ... Fri, 23 Oct 2009 12:51:39 GMT duh [28] * trunk/grails-app/views/common/_topnav.gsp (modified) * trunk/web-app/css/style.css (modified) -changed CSS from absolute to relative -added traling slash to home ... Thu, 22 Oct 2009 16:24:16 GMT duh [27] * trunk/web-app/images/favicon.ico (modified) -added a temporary favicon Thu, 22 Oct 2009 16:04:07 GMT duh [26] * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/web-app/css/style.css (modified) * trunk/web-app/images/index1.jpg (added) * trunk/web-app/images/index2.jpg (added) * trunk/web-app/images/skin/header.png (modified) - added dummy (lorem ipsum) content to index page - added two dummy ... Thu, 22 Oct 2009 13:50:36 GMT duh [25] * trunk/web-app/images/obsolete (deleted) final fix of conflict / lock mess Thu, 22 Oct 2009 13:42:50 GMT duh [24] * trunk/web-app/images/GSCF_logo.png (deleted) * trunk/web-app/images/bla (deleted) * trunk/web-app/images/skin (moved) * trunk/web-app/images/spinner.gif (deleted) * trunk/web-app/js/application.js (deleted) * trunk/web-app/js/prototype (deleted) fixing conflict mess... Thu, 22 Oct 2009 13:39:00 GMT duh [23] * trunk/application.properties (modified) * trunk/grails-app/views/common (added) * trunk/grails-app/views/common/_login_panel.gsp (added) * trunk/grails-app/views/common/_topnav.gsp (added) * trunk/grails-app/views/index.gsp (modified) * trunk/grails-app/views/layouts/main.gsp (modified) * trunk/web-app/css/grailsDefault.css (moved) * trunk/web-app/css/login_panel.css (added) * trunk/web-app/css/style.css (added) * trunk/web-app/images/grails_logo.jpg (deleted) * trunk/web-app/images/icons (added) * trunk/web-app/images/icons/famfamfam (added) * trunk/web-app/images/icons/famfamfam/accept.png (added) * trunk/web-app/images/icons/famfamfam/application_edit.png (added) * trunk/web-app/images/icons/famfamfam/delete.png (added) * trunk/web-app/images/obsolete (added) * trunk/web-app/images/obsolete/grails_logo.jpg (added) * trunk/web-app/images/skin_new (added) * trunk/web-app/images/skin_new/body_bg.gif (added) * trunk/web-app/images/skin_new/header.png (added) * trunk/web-app/images/skin_new/login_panel (added) * trunk/web-app/images/skin_new/login_panel/Thumbs.db (added) * trunk/web-app/images/skin_new/login_panel/bg.jpg (added) * trunk/web-app/images/skin_new/login_panel/bt_close.png (added) * trunk/web-app/images/skin_new/login_panel/bt_login.png (added) * trunk/web-app/images/skin_new/login_panel/bt_open.png (added) * trunk/web-app/images/skin_new/login_panel/bt_register.png (added) * trunk/web-app/images/skin_new/login_panel/tab_b.png (added) * trunk/web-app/images/skin_new/login_panel/tab_l.png (added) * trunk/web-app/images/skin_new/login_panel/tab_m.png (added) * trunk/web-app/images/skin_new/login_panel/tab_r.png (added) * trunk/web-app/images/skin_new/tables (added) * trunk/web-app/images/skin_new/tables/shadow.jpg (added) * trunk/web-app/images/skin_new/tables/sorted_asc.gif (added) * trunk/web-app/images/skin_new/tables/sorted_desc.gif (added) * trunk/web-app/images/skin_new/topnav (added) * trunk/web-app/images/skin_new/topnav/dropdown_linkbg.gif (added) * trunk/web-app/images/skin_new/topnav/header_bg.gif (added) * trunk/web-app/images/skin_new/topnav/subnav_btn.gif (added) * trunk/web-app/images/skin_new/topnav/topnav_bg.gif (added) * trunk/web-app/images/skin_new/topnav/topnav_hover.gif (added) * trunk/web-app/js/login_panel.js (added) * trunk/web-app/js/topnav.js (added) - created new templates - moved default grails images and prototype ... Thu, 22 Oct 2009 13:31:48 GMT duh [22] * trunk/web-app/images/bla (added) * trunk/web-app/images/bla/skin (moved) moved files due to conflict Thu, 22 Oct 2009 07:29:47 GMT gajula [21] * trunk/application.properties (modified) * trunk/grails-app/controllers/DataController.groovy (deleted) * trunk/grails-app/controllers/DataTypeController.groovy (deleted) * trunk/grails-app/controllers/ExperimentController.groovy (deleted) * trunk/grails-app/controllers/ExperimentSampleController.groovy (deleted) * trunk/grails-app/controllers/MetaDataController.groovy (deleted) * trunk/grails-app/controllers/MetaFieldController.groovy (deleted) * trunk/grails-app/controllers/MetaFieldGroupController.groovy (deleted) * trunk/grails-app/controllers/MetaFieldOptionController.groovy (deleted) * trunk/grails-app/controllers/MetaFieldTypeController.groovy (deleted) * trunk/grails-app/controllers/StudyController.groovy (deleted) * trunk/test/unit/DataControllerTests.groovy (added) * trunk/test/unit/DataTypeControllerTests.groovy (added) * trunk/test/unit/ExperimentControllerTests.groovy (added) * trunk/test/unit/ExperimentSampleControllerTests.groovy (added) * trunk/test/unit/MetaDataControllerTests.groovy (added) * trunk/test/unit/MetaFieldControllerTests.groovy (added) * trunk/test/unit/MetaFieldGroupControllerTests.groovy (added) * trunk/test/unit/MetaFieldOptionControllerTests.groovy (added) * trunk/test/unit/MetaFieldTypeControllerTests.groovy (added) * trunk/test/unit/StudyControllerTests.groovy (added) Deleting Controllers for domain classes- i will create after ...