Changeset 92 for trunk/grails-app/conf

Timestamp:

Jan 19, 2010, 2:25:45 PM (14 years ago)

Author:

duh

Message:

• added sample template data in bootstrap
• upgraded jQuery
• improved study capture wizard
• fixed selenium test

Location:

trunk/grails-app/conf

Files:

• BootStrap.groovy (modified) (2 diffs)
• NimbleBootStrap.groovy (modified) (1 diff)

trunk/grails-app/conf/BootStrap.groovy

@@ -1 +1 @@
 import org.codehaus.groovy.grails.commons.GrailsApplication
 import grails.util.GrailsUtil
+import dbnp.studycapturing.*
+import intient.nimble.InstanceGenerator
 
 /**
  * Application Bootstrapper
- * @Author  Jeroen Wesbeek
- * @Since   20091021
+ * @Author Jeroen Wesbeek
+ * @Since 20091021
  *
  * Revision information:
@@ -13 +15 @@
  */
 class BootStrap {
-     def init = { servletContext ->      
-         // check if we're in development
-         if (GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
-             printf("development bootstrapping....\n\n");
-             
-         }
-     }
-     def destroy = {
-     }
+        def init = {servletContext ->
+                if (GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
+                        printf("development bootstrapping....\n\n");
+
+                        // ontologies
+                        def speciesOntology = new Ontology(
+                                name: 'Species',
+                                shortName: 'Species',
+                                url: 'http://www.obofoundry.org/cgi-bin/detail.cgi?id=ncbi_taxonomy'
+                        ).save()
+
+                        // terms
+                        def mouseTerm = new Term(
+                                name: 'Mus musculus',
+                                ontology: speciesOntology,
+                                accession: '10090'
+                        ).save()
+                        def humanTerm = new Term(
+                                name: 'Homo sapiens',
+                                ontology: speciesOntology,
+                                accession: '9606'
+                        ).save()
+
+                        // create system user
+                        /*
+                        def systemUser = userService.createUser(InstanceGenerator.user(
+                                username: 'system',
+                                pass: 'system',
+                                passConfirm: 'system',
+                                enabled: true
+                        ))
+                        */
+
+                        // define template fields
+                        def genotypeTemplateField = new TemplateSubjectField(
+                                name: 'Genotype',
+                                type: TemplateFieldType.STRINGLIST
+                        ).save()
+
+                        // Mouse template
+                        def mouseTemplate = new Template(
+                                name: 'Mouse'
+                        ).addToSubjectFields(genotypeTemplateField).save()
+                }
+        }
+
+        def destroy = {
+        }
 } 

trunk/grails-app/conf/NimbleBootStrap.groovy

@@ -47 +47 @@
     // Execute any custom Nimble related BootStrap for your application below
     if (nimble.User.count() == 0) {
+        println ".bootstrapping nimble"
 
         // Create example User account