Changeset 836 for trunk/grails-app/conf/BootStrapStudies.groovy

Timestamp:

Aug 25, 2010, 9:44:58 AM (13 years ago)

Author:

keesvb

Message:

added some example assay templates, started with implementation of assay and assay group steps in wizard

File:

• trunk/grails-app/conf/BootStrapStudies.groovy (modified) (6 diffs)

trunk/grails-app/conf/BootStrapStudies.groovy

@@ -38 +38 @@
                 def humanTissueSampleTemplate = Template.findByName("Human tissue sample")
                 def humanBloodSampleTemplate = Template.findByName("Human blood sample")
-                
+                def ccAssayTemplate = Template.findByName("Clinical chemistry assay")
+                def metAssayTemplate = Template.findByName("Metabolomics assay")
 
                 // Add terms manually, to avoid having to do many HTTP requests to the BioPortal website
@@ -481 +482 @@
                 def lipidAssayRef = new Assay(
                         name: 'Lipid profiling',
+                        template: ccAssayTemplate,
                         module: clinicalModule,
                         externalAssayID: 'PPS3_SAM'
@@ -487 +489 @@
                 def metAssayRef = new Assay(
                         name: 'Lipidomics profile',
+                        template: metAssayTemplate,
                         module: metabolomicsModule,
                         externalAssayID: 'PPS3_Lipidomics'
                 )
+                .setFieldValue('Spectrometry technique','LC/MS')
 
                 mouseStudy.samples*.each {
@@ -504 +508 @@
                 def  glucoseAssayBRef = new Assay(
                         name: 'Glucose assay before',
+                        template: ccAssayTemplate,
                         module: clinicalModule,
                         externalAssayID: 'PPSH-Glu-B'
@@ -510 +515 @@
                 def  glucoseAssayARef = new Assay(
                         name: 'Glucose assay after',
+                        template: ccAssayTemplate,
                         module: clinicalModule,
                         externalAssayID: 'PPSH-Glu-A'
@@ -516 +522 @@
                 def metAssayRefB = new Assay(
                         name: 'Lipidomics profile before',
+                        template: metAssayTemplate,
                         module: metabolomicsModule,
                         externalAssayID: 'PPSH_Lipidomics_start'
                 )
+                .setFieldValue('Spectrometry technique','GC/MS')
 
                 def metAssayRefA = new Assay(
                         name: 'Lipidomics profile after',
+                        template: metAssayTemplate,
                         module: metabolomicsModule,
                         externalAssayID: 'PPSH_Lipidomics_end'
                 )
+                .setFieldValue('Spectrometry technique','GC/MS')
+
                 humanStudy.samples*.each {
                         if (it.parentEvent.startTime == 0) {