Changeset 816 for trunk/grails-app/conf

Timestamp:

Aug 17, 2010, 12:09:35 PM (11 years ago)

Author:

duh

Message:

• extended bootstrapping to ignore study bootrstrapping when a special file is present

File:

• trunk/grails-app/conf/BootStrap.groovy (modified) (1 diff)

trunk/grails-app/conf/BootStrap.groovy

@@ -38 +38 @@
                         // If in development mode and no studies are present, add example studies
                         if (Study.count() == 0 && grails.util.GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
-                                BootStrapStudies.addExampleStudies()
+                                // check if special file is present in project directory
+                                if ((new File(System.properties['user.dir']+"/.skip-studies").exists())) {
+                                        // yes it is, skip study bootstrapping
+                                        println ".skipping study bootstrapping"
+
+                                        // get species ontology
+                                        def speciesOntology = Ontology.getOrCreateOntologyByNcboId(1132)
+
+                                        // add terms
+                                        def mouseTerm = new Term(
+                                                name: 'Mus musculus',
+                                                ontology: speciesOntology,
+                                                accession: '10090'
+                                        ).with { if (!validate()) { errors.each { println it} } else save()}
+
+                                        def humanTerm = new Term(
+                                                name: 'Homo sapiens',
+                                                ontology: speciesOntology,
+                                                accession: '9606'
+                                        ).with { if (!validate()) { errors.each { println it} } else save()}
+                                } else {
+                                        // general study boostrapping
+                                        BootStrapStudies.addExampleStudies()
+                                }
                         }