Changeset 573

Timestamp:

Jun 16, 2010, 4:17:36 PM (9 years ago)

Author:

duh

Message:

• fixed issue with auto-creating ontologies when an ontology does not yet exist for a given term

File:

• trunk/grails-app/controllers/dbnp/studycapturing/TermEditorController.groovy (modified) (1 diff)

trunk/grails-app/controllers/dbnp/studycapturing/TermEditorController.groovy

@@ -67 +67 @@
 
                                         // use the NCBO REST service to fetch ontology information
-                                        def url = "http://rest.bioontology.org/bioportal/ontologies/" + params.get('term-ontology_id')
-                                        def xml = new URL( url ).getText()
-                                        def data = new XmlParser().parseText( xml )
-                                        def bean = data.data.ontologyBean
+                                        try {
+                                                def url = "http://rest.bioontology.org/bioportal/ontologies/" + params.get('term-ontology_id')
+                                                def xml = new URL( url ).getText()
+                                                def data = new XmlParser().parseText( xml )
+                                                def bean = data.data.ontologyBean
 
-                                        // instantiate Ontology with the proper values
-                                        ontology = Ontology.getBioPortalOntologyByVersionedId( params.get('term-ontology_id') ).save(flush:true)
-                                        println ontology
+                                                // instantiate Ontology with the proper values
+                                                ontology = Ontology.getBioPortalOntologyByVersionedId( params.get('term-ontology_id') ).save(flush:true)
+                                                println ontology
 
-                                        if (ontology.validate()) {
-                                                ontology.save(flush:true)
+                                                if (ontology.validate()) {
+                                                        ontology.save(flush:true)
+                                                }
+                                        } catch (Exception e) {
+                                                // something went wrong, probably the
+                                                // ontology-id is invalid (hence, the term
+                                                // is invalid)
                                         }
-                                        println ontology
                                 }