Changeset 525 for trunk

Timestamp:

Jun 4, 2010, 11:20:48 AM (12 years ago)

Author:

duh

Message:

• fixed some indentation

File:

• trunk/grails-app/conf/BootStrap.groovy (modified) (6 diffs)

trunk/grails-app/conf/BootStrap.groovy

@@ -352 +352 @@
 
                         def fastingTreatment = new Template(
-                                name: 'Fasting treatment',
-                                description: 'Fasting Protocol NuGO PPSH',
-                                entity: dbnp.studycapturing.Event)
-                        .addToFields(new TemplateField(
-                                name: 'Fasting period',
-                                type: TemplateFieldType.STRING))
-                         .with { if (!validate()) { errors.each { println it} } else save()}
+                                name: 'Fasting treatment',
+                                description: 'Fasting Protocol NuGO PPSH',
+                                entity: dbnp.studycapturing.Event
+                        )
+            .addToFields(
+                                new TemplateField(
+                                        name: 'Fasting period',
+                                        type: TemplateFieldType.STRING
+                                )
+                        )
+                        .with { if (!validate()) { errors.each { println it} } else save()}
 
                         // SamplingEvent templates
-
-                        def samplingProtocolField = new TemplateField(
-                        name: 'Sample Protocol',type: TemplateFieldType.STRING)
-                        .with { if (!validate()) { errors.each { println it} } else save()}
+            def samplingProtocolField = new TemplateField(
+                name: 'Sample Protocol',
+                                type: TemplateFieldType.STRING
+                        )
+            .with { if (!validate()) { errors.each { println it} } else save()}
 
                         def liverSamplingEventTemplate = new Template(
@@ -593 +598 @@
                                 .addToPersons( studyperson1 )
                                 .addToPersons( studyperson2 )
-                                .addToPublications( publication1 )
-                                .addToPublications( publication2 )
+                .addToPublications( publication1 )
+                .addToPublications( publication2 )
                                 .save()
 
@@ -633 +638 @@
                                 def y = 1
                                 11.times {
-                                        def currentSubject = new Subject(
-                                              name: "" + y++,
-                                              species: humanTerm,
-                                              template: humanTemplate)
+                                        def currentSubject = new Subject(
+                                                name: "" + y++,
+                                                species: humanTerm,
+                                                template: humanTemplate
+                                        )
                                         .setFieldValue("Gender", (Math.random() > 0.5) ? "Male" : "Female")
                                         .setFieldValue("DOB", new java.text.SimpleDateFormat("dd-mm-yy").parse("01-02-19" + (10 + (int) (Math.random() * 80))))
@@ -645 +651 @@
                                         .with { if (!validate()) { errors.each { println it} } else save()}
 
-                                        rootGroup.addToSubjects currentSubject
-                                        rootGroup.save()
-
-                                        def currentSample = new Sample(
-                                              name: currentSubject.name + '_B',
-                                              material: bloodTerm,
-                                              parentSubject: currentSubject,
-                                              parentEvent: bloodSamplingEvent);
-
-                                        humanStudy.addToSubjects(currentSubject).addToSamples(currentSample).with { if (!validate()) { errors.each { println it} } else save()}
+                                        rootGroup.addToSubjects currentSubject
+                                        rootGroup.save()
+
+                                        def currentSample = new Sample(
+                                                name: currentSubject.name + '_B',
+                                                material: bloodTerm,
+                                                parentSubject: currentSubject,
+                                                parentEvent: bloodSamplingEvent
+                                        );
+
+                                        humanStudy.addToSubjects(currentSubject).addToSamples(currentSample).with { if (!validate()) { errors.each { println it} } else save()}
                                 }
 
@@ -742 +749 @@
                                 humanStudy.save()
 
-                                mouseStudy.addToAssays(lipidAssayRef);
+                        mouseStudy.addToAssays(lipidAssayRef);
                                 mouseStudy.save()
 
@@ -749 +756 @@
 
                 // Ontologies must be connected to the templatefields in runtime
-                // because the Ontology.findByNcboId is not available otherwise
-                TemplateEntity.getField( Subject.domainFields, 'species' ).ontologies = [Ontology.findByNcboId(1132)]
-                TemplateEntity.getField( Sample.domainFields, 'material' ).ontologies = [Ontology.findByNcboId(1005)]
+                // because the Ontology.findByNcboId is not available otherwise
+                TemplateEntity.getField(Subject.domainFields, 'species').ontologies = [Ontology.findByNcboId(1132)]
+                TemplateEntity.getField(Sample.domainFields, 'material').ontologies = [Ontology.findByNcboId(1005)]
 
         }